itkShapedFloodFilledFunctionConditionalConstIterator.h

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 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
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 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
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#ifndef __itkShapedFloodFilledFunctionConditionalConstIterator_h
#define __itkShapedFloodFilledFunctionConditionalConstIterator_h

#include <queue>
#include <vector>

#include "itkSize.h"
#include "itkConditionalConstIterator.h"
#include "itkConnectedComponentAlgorithm.h"

namespace itk
{
template< typename TImage, typename TFunction >
class ShapedFloodFilledFunctionConditionalConstIterator:
  public ConditionalConstIterator< TImage >
{
public:

  typedef ShapedFloodFilledFunctionConditionalConstIterator Self;

  typedef TFunction FunctionType;

  typedef typename TFunction::InputType FunctionInputType;

  typedef typename TImage::IndexType IndexType;

  typedef typename std::vector< IndexType > SeedsContainerType;

  typedef typename TImage::OffsetType OffsetType;

  typedef typename TImage::SizeType SizeType;

  typedef typename TImage::RegionType RegionType;

  typedef TImage ImageType;

  typedef typename TImage::InternalPixelType InternalPixelType;

  typedef typename TImage::PixelType PixelType;

  typedef typename itk::ShapedNeighborhoodIterator< ImageType > NeighborhoodIteratorType;

  itkStaticConstMacro(NDimensions, unsigned int, TImage::ImageDimension);

  ShapedFloodFilledFunctionConditionalConstIterator(const ImageType *imagePtr,
                                                    FunctionType *fnPtr,
                                                    IndexType startIndex);

  ShapedFloodFilledFunctionConditionalConstIterator(const ImageType *imagePtr,
                                                    FunctionType *fnPtr,
                                                    std::vector< IndexType > & startIndices);

  ShapedFloodFilledFunctionConditionalConstIterator(const ImageType *imagePtr,
                                                    FunctionType *fnPtr);

  void FindSeedPixel();

  void FindSeedPixels();

  void InitializeIterator();

  virtual ~ShapedFloodFilledFunctionConditionalConstIterator() {}

  virtual bool IsPixelIncluded(const IndexType & index) const = 0;

  Self & operator=(const Self & it)
  {
    this->m_Image = it.m_Image;     // copy the smart pointer
    this->m_Region = it.m_Region;
    return *this;
  }

  static unsigned int GetIteratorDimension()
  { return TImage::ImageDimension; }

  const IndexType GetIndex()
  { return m_IndexStack.front(); }

  const PixelType Get(void) const
  { return this->m_Image->GetPixel( m_IndexStack.front() ); }

  bool IsAtEnd()
  { return this->m_IsAtEnd; }

  void AddSeed(const IndexType seed)
  {
    m_Seeds.push_back (seed);
  }

  void ClearSeeds()
  {
    m_Seeds.clear();
  }

  void GoToBegin()
  {
    // Clear the queue
    while ( !m_IndexStack.empty() )
      {
      m_IndexStack.pop();
      }

    this->m_IsAtEnd = true;
    // Initialize the temporary image
    m_TempPtr->FillBuffer(
      NumericTraits< typename TTempImage::PixelType >::Zero
      );

    for ( unsigned int i = 0; i < m_Seeds.size(); i++ )
      {
      if ( this->m_Image->GetBufferedRegion().IsInside (m_Seeds[i])
           && this->IsPixelIncluded(m_Seeds[i]) )
        {
        // Push the seed onto the queue
        m_IndexStack.push(m_Seeds[i]);

        // Obviously, we're at the beginning
        this->m_IsAtEnd = false;

        // Mark the start index in the temp image as inside the
        // function, neighbor check incomplete
        m_TempPtr->SetPixel(m_Seeds[i], 2);
        }
      }
  }

  void operator++()
  { this->DoFloodStep(); }

  void DoFloodStep();

  virtual SmartPointer< FunctionType > GetFunction() const
  {
    return m_Function;
  }

  void SetFullyConnected(const bool _arg);

  bool GetFullyConnected() const;

  itkBooleanMacro(FullyConnected);

  virtual const SeedsContainerType &GetSeeds() const
  {
    return m_Seeds;
  }

protected: //made protected so other iterators can access
  SmartPointer< FunctionType > m_Function;

  typedef Image< unsigned char, itkGetStaticConstMacro(NDimensions) > TTempImage;

  typename TTempImage::Pointer m_TempPtr;

  SeedsContainerType m_Seeds;

  typename ImageType::PointType m_ImageOrigin;

  typename ImageType::SpacingType m_ImageSpacing;

  NeighborhoodIteratorType m_NeighborhoodIterator;

  RegionType m_ImageRegion;

  std::queue< IndexType > m_IndexStack;

  FunctionInputType m_LocationVector;

  bool m_FoundUncheckedNeighbor;

  bool m_IsValidIndex;

  bool m_FullyConnected;
};
} // end namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkShapedFloodFilledFunctionConditionalConstIterator.hxx"
#endif

#endif