#include <itkGPUAnisotropicDiffusionFunction.h>

Inheritance diagram for itk::GPUAnisotropicDiffusionFunction< TImage >:

Collaboration diagram for itk::GPUAnisotropicDiffusionFunction< TImage >:

Detailed Description

template<typename TImage>
class itk::GPUAnisotropicDiffusionFunction< TImage >

This is the GPU version of AnisotropicDiffusionFunction class.

How to use this class: This class must be subclassed to provide the GPUCalculateUpdate() methods of GPUFiniteDifferenceFunction and the function CalculateAverageGradientMagnitudeSquared(), which is called before each iteration to recalibrate the conductance term.

Definition at line 38 of file itkGPUAnisotropicDiffusionFunction.h.

Public Types
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::FloatOffsetType	FloatOffsetType

typedef Superclass::ImageType	ImageType

typedef Superclass::NeighborhoodType	NeighborhoodType

typedef Superclass::PixelRealType	PixelrealType

typedef Superclass::PixelType	PixelType

typedef SmartPointer< Self >	Pointer

typedef Superclass::RadiusType	RadiusType

typedef GPUAnisotropicDiffusionFunction	Self

typedef GPUFiniteDifferenceFunction < TImage >	Superclass

typedef Superclass::TimeStepType	TimeStepType

Public Types inherited from itk::GPUFiniteDifferenceFunction< TImage >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::DefaultBoundaryConditionType	DefaultBoundaryConditionType

typedef Superclass	DifferenceFunctionType

typedef Superclass::FloatOffsetType	FloatOffsetType

typedef Superclass::ImageType	ImageType

typedef Superclass::NeighborhoodType	NeighborhoodType

typedef Superclass::PixelRealType	PixelRealType

typedef Superclass::PixelType	PixelType

typedef SmartPointer< Self >	Pointer

typedef Superclass::RadiusType	RadiusType

typedef GPUFiniteDifferenceFunction	Self

typedef FiniteDifferenceFunction < TImage >	Superclass

typedef Superclass::TimeStepType	TimeStepType

Public Types inherited from itk::FiniteDifferenceFunction< TImage >
typedef SmartPointer< const Self >	ConstPointer

typedef ZeroFluxNeumannBoundaryCondition < ImageType >	DefaultBoundaryConditionType

typedef Vector< float, itkGetStaticConstMacro(ImageDimension) >	FloatOffsetType

typedef TImage	ImageType

typedef Vector< PixelRealType, itkGetStaticConstMacro(ImageDimension) >	NeighborhoodScalesType

typedef ConstNeighborhoodIterator < TImage, DefaultBoundaryConditionType >	NeighborhoodType

typedef double	PixelRealType

typedef ImageType::PixelType	PixelType

typedef SmartPointer< Self >	Pointer

typedef ConstNeighborhoodIterator < TImage >::RadiusType	RadiusType

typedef FiniteDifferenceFunction	Self

typedef LightObject	Superclass

typedef double	TimeStepType

Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightObject	Self

Public Member Functions
virtual TimeStepType	ComputeGlobalTimeStep (void *) const override

const double &	GetAverageGradientMagnitudeSquared () const

const double &	GetConductanceParameter () const

virtual void *	GetGlobalDataPointer () const override

virtual const char *	GetNameOfClass () const

const TimeStepType &	GetTimeStep () const

virtual void	GPUCalculateAverageGradientMagnitudeSquared (ImageType *)=0

virtual void	ReleaseGlobalDataPointer (void *) const override

void	SetAverageGradientMagnitudeSquared (const double &c)

void	SetConductanceParameter (const double &c)

void	SetTimeStep (const TimeStepType &t)

Public Member Functions inherited from itk::GPUFiniteDifferenceFunction< TImage >
virtual void	GPUAllocateMetricData (unsigned int)

virtual void	GPUComputeUpdate (const typename TImage::Pointer output, typename TImage::Pointer update, void *gd)=0

virtual void	GPUReleaseMetricData ()

virtual PixelType	ComputeUpdate (const NeighborhoodType &, void *, const FloatOffsetType &) override

Public Member Functions inherited from itk::FiniteDifferenceFunction< TImage >
const NeighborhoodScalesType	ComputeNeighborhoodScales () const

const RadiusType &	GetRadius () const

void	GetScaleCoefficients (PixelRealType vals[ImageDimension]) const

virtual void	InitializeIteration ()

void	SetRadius (const RadiusType &r)

void	SetScaleCoefficients (PixelRealType vals[ImageDimension])

Public Member Functions inherited from itk::LightObject
virtual Pointer	CreateAnother () const

virtual void	Delete ()

virtual int	GetReferenceCount () const

	itkCloneMacro (Self)

void	Print (std::ostream &os, Indent indent=0) const

virtual void	Register () const

virtual void	SetReferenceCount (int)

virtual void	UnRegister () const noexcept

Static Public Attributes
static const unsigned int	ImageDimension = Superclass::ImageDimension

Static Public Attributes inherited from itk::GPUFiniteDifferenceFunction< TImage >
static const unsigned int	ImageDimension

Static Public Attributes inherited from itk::FiniteDifferenceFunction< TImage >
static const unsigned int	ImageDimension

Protected Member Functions
	GPUAnisotropicDiffusionFunction ()

void	PrintSelf (std::ostream &os, Indent indent) const override

	~GPUAnisotropicDiffusionFunction ()

Protected Member Functions inherited from itk::GPUFiniteDifferenceFunction< TImage >
	GPUFiniteDifferenceFunction ()

	~GPUFiniteDifferenceFunction ()

Protected Member Functions inherited from itk::FiniteDifferenceFunction< TImage >
	FiniteDifferenceFunction ()

	~FiniteDifferenceFunction ()

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Protected Attributes
GPUDataManager::Pointer	m_AnisotropicDiffusionFunctionGPUBuffer

GPUKernelManager::Pointer	m_AnisotropicDiffusionFunctionGPUKernelManager

int	m_AverageGradientMagnitudeSquaredGPUKernelHandle

Protected Attributes inherited from itk::GPUFiniteDifferenceFunction< TImage >
int	m_ComputeUpdateGPUKernelHandle

GPUKernelManager::Pointer	m_GPUKernelManager

Protected Attributes inherited from itk::FiniteDifferenceFunction< TImage >
RadiusType	m_Radius

PixelRealType	m_ScaleCoefficients [ImageDimension]

Protected Attributes inherited from itk::LightObject
AtomicInt< int >	m_ReferenceCount

Private Member Functions
	GPUAnisotropicDiffusionFunction (const Self &)

void	operator= (const Self &)

Private Attributes
double	m_AverageGradientMagnitudeSquared

double	m_ConductanceParameter

TimeStepType	m_TimeStep

Additional Inherited Members
Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Member Typedef Documentation

template<typename TImage >

typedef SmartPointer< const Self > itk::GPUAnisotropicDiffusionFunction< TImage >::ConstPointer

Definition at line 47 of file itkGPUAnisotropicDiffusionFunction.h.

template<typename TImage >

typedef Superclass::FloatOffsetType itk::GPUAnisotropicDiffusionFunction< TImage >::FloatOffsetType

Definition at line 59 of file itkGPUAnisotropicDiffusionFunction.h.

template<typename TImage >

typedef Superclass::ImageType itk::GPUAnisotropicDiffusionFunction< TImage >::ImageType

Inherit some parameters from the superclass type

Definition at line 50 of file itkGPUAnisotropicDiffusionFunction.h.

template<typename TImage >

typedef Superclass::NeighborhoodType itk::GPUAnisotropicDiffusionFunction< TImage >::NeighborhoodType

Definition at line 57 of file itkGPUAnisotropicDiffusionFunction.h.

template<typename TImage >

typedef Superclass::PixelRealType itk::GPUAnisotropicDiffusionFunction< TImage >::PixelrealType

Definition at line 55 of file itkGPUAnisotropicDiffusionFunction.h.

template<typename TImage >

typedef Superclass::PixelType itk::GPUAnisotropicDiffusionFunction< TImage >::PixelType

Definition at line 54 of file itkGPUAnisotropicDiffusionFunction.h.

template<typename TImage >

typedef SmartPointer< Self > itk::GPUAnisotropicDiffusionFunction< TImage >::Pointer

Definition at line 46 of file itkGPUAnisotropicDiffusionFunction.h.

template<typename TImage >

typedef Superclass::RadiusType itk::GPUAnisotropicDiffusionFunction< TImage >::RadiusType

Definition at line 56 of file itkGPUAnisotropicDiffusionFunction.h.

template<typename TImage >

typedef GPUAnisotropicDiffusionFunction itk::GPUAnisotropicDiffusionFunction< TImage >::Self

Standard class typedefs.

Definition at line 44 of file itkGPUAnisotropicDiffusionFunction.h.

template<typename TImage >

typedef GPUFiniteDifferenceFunction< TImage > itk::GPUAnisotropicDiffusionFunction< TImage >::Superclass

Definition at line 45 of file itkGPUAnisotropicDiffusionFunction.h.

template<typename TImage >

typedef Superclass::TimeStepType itk::GPUAnisotropicDiffusionFunction< TImage >::TimeStepType

Definition at line 58 of file itkGPUAnisotropicDiffusionFunction.h.

Constructor & Destructor Documentation

template<typename TImage >

itk::GPUAnisotropicDiffusionFunction< TImage >::GPUAnisotropicDiffusionFunction ( )

inlineprotected

Definition at line 127 of file itkGPUAnisotropicDiffusionFunction.h.

References itk::GPUAnisotropicDiffusionFunction< TImage >::m_AverageGradientMagnitudeSquared, itk::GPUAnisotropicDiffusionFunction< TImage >::m_ConductanceParameter, and itk::GPUAnisotropicDiffusionFunction< TImage >::m_TimeStep.

template<typename TImage >

itk::GPUAnisotropicDiffusionFunction< TImage >::~GPUAnisotropicDiffusionFunction ( )

inlineprotected

Definition at line 134 of file itkGPUAnisotropicDiffusionFunction.h.

template<typename TImage >

itk::GPUAnisotropicDiffusionFunction< TImage >::GPUAnisotropicDiffusionFunction ( const Self & )

private

Member Function Documentation

template<typename TImage >

virtual TimeStepType itk::GPUAnisotropicDiffusionFunction< TImage >::ComputeGlobalTimeStep ( void * ) const

inlineoverridevirtual

Returns the time step supplied by the user. We don't need to use the global data supplied since we are returning a fixed value.

Implements itk::FiniteDifferenceFunction< TImage >.

Definition at line 108 of file itkGPUAnisotropicDiffusionFunction.h.

References itk::GPUAnisotropicDiffusionFunction< TImage >::GetTimeStep().

template<typename TImage >

const double& itk::GPUAnisotropicDiffusionFunction< TImage >::GetAverageGradientMagnitudeSquared ( ) const

inline

Set/Get the average gradient magnitude squared.

Definition at line 96 of file itkGPUAnisotropicDiffusionFunction.h.

References itk::GPUAnisotropicDiffusionFunction< TImage >::m_AverageGradientMagnitudeSquared.

Referenced by itk::GPUGradientNDAnisotropicDiffusionFunction< TImage >::InitializeIteration().

template<typename TImage >

const double& itk::GPUAnisotropicDiffusionFunction< TImage >::GetConductanceParameter ( ) const

inline

Definition at line 90 of file itkGPUAnisotropicDiffusionFunction.h.

References itk::GPUAnisotropicDiffusionFunction< TImage >::m_ConductanceParameter.

Referenced by itk::GPUGradientNDAnisotropicDiffusionFunction< TImage >::InitializeIteration().

template<typename TImage >

virtual void* itk::GPUAnisotropicDiffusionFunction< TImage >::GetGlobalDataPointer ( ) const

inlineoverridevirtual

The anisotropic diffusion classes don't use this particular parameter so it's safe to return a null value.

Implements itk::FiniteDifferenceFunction< TImage >.

Definition at line 115 of file itkGPUAnisotropicDiffusionFunction.h.

template<typename TImage >

virtual const char* itk::GPUAnisotropicDiffusionFunction< TImage >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods)

Reimplemented from itk::GPUFiniteDifferenceFunction< TImage >.

Reimplemented in itk::GPUGradientNDAnisotropicDiffusionFunction< TImage >, and itk::GPUScalarAnisotropicDiffusionFunction< TImage >.

template<typename TImage >

const TimeStepType& itk::GPUAnisotropicDiffusionFunction< TImage >::GetTimeStep ( void ) const

inline

Definition at line 79 of file itkGPUAnisotropicDiffusionFunction.h.

References itk::GPUAnisotropicDiffusionFunction< TImage >::m_TimeStep.

Referenced by itk::GPUAnisotropicDiffusionFunction< TImage >::ComputeGlobalTimeStep().

template<typename TImage >

virtual void itk::GPUAnisotropicDiffusionFunction< TImage >::GPUCalculateAverageGradientMagnitudeSquared ( ImageType * )

pure virtual

This method is called before each iteration. It calculates a scalar value that is the average of the gradient magnitude squared at each pixel in the output image (intermediate solution). The average gradient magnitude value is typically used in the anisotropic diffusion equations to calibrate the conductance term.

template<typename TImage >

void itk::GPUAnisotropicDiffusionFunction< TImage >::operator= ( const Self & )

private

template<typename TImage >

void itk::GPUAnisotropicDiffusionFunction< TImage >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

inlineoverrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::FiniteDifferenceFunction< TImage >.

Definition at line 137 of file itkGPUAnisotropicDiffusionFunction.h.

References itk::GPUAnisotropicDiffusionFunction< TImage >::m_ConductanceParameter, itk::GPUAnisotropicDiffusionFunction< TImage >::m_TimeStep, and itk::FiniteDifferenceFunction< TImage >::PrintSelf().

template<typename TImage >

virtual void itk::GPUAnisotropicDiffusionFunction< TImage >::ReleaseGlobalDataPointer ( void * ) const

inlineoverridevirtual

Does nothing. No global data is used in this class of equations.

Implements itk::FiniteDifferenceFunction< TImage >.

Definition at line 121 of file itkGPUAnisotropicDiffusionFunction.h.

template<typename TImage >

void itk::GPUAnisotropicDiffusionFunction< TImage >::SetAverageGradientMagnitudeSquared ( const double & c )

inline