#include <itkGeodesicActiveContourShapePriorLevelSetImageFilter.h>

Inheritance diagram for itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >:

Collaboration diagram for itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >:

Detailed Description

template<typename TInputImage, typename TFeatureImage, typename TOutputPixelType = float>
class itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >

Segments structures in an image based on a user supplied edge potential map and user supplied shape model.

IMPORTANT: The SegmentationLevelSetImageFilter class, ShapePriorSegmentationLevelSetImageFilter class and the GeodesicActiveContourShapePrior0LevelSetFunction class contain additional information necessary to gain full understanding of how to use this filter.

OVERVIEW: This class is a level set method segmentation filter. An initial contour is propagated outwards (or inwards) until it ''sticks'' to the shape boundaries. This is done by using a level set speed function based on a user supplied edge potential map and a user supplied shape model.

INPUTS: This filter requires two inputs. The first input is a initial level set. The initial level set is a real image which contains the initial contour/surface as the zero level set. For example, a signed distance function from the initial contour/surface is typically used. Unlike the simpler ShapeDetectionLevelSetImageFilter the initial contour does not have to lie wholly within the shape to be segmented. The initial contour is allow to overlap the shape boundary. The advection term in the update equation behaves like a doublet and attracts the contour to the boundary. The shape prior term adds robustness by incorporating aprior information about the shape to be segmented. This approach for segmentation follows that of Leventon et al (2000).

: The second input is the feature image. For this filter, this is the edge potential map. General characteristics of an edge potential map is that it has values close to zero in regions near the edges and values close to one inside the shape itself. Typically, the edge potential map is compute from the image gradient, for example:

$g(I) = 1 / ( 1 + | (\nabla * G)(I)| )$

$g(I) = \exp^{-|(\nabla * G)(I)|}$

where $ I $ is image intensity and $(\nabla * G)$ is the derivative of Gaussian operator.

: See SegmentationLevelSetImageFilter and SparseFieldLevelSetImageFilter for more information on Inputs.

PARAMETERS: The PropagationScaling parameter can be used to switch from propagation outwards (POSITIVE scaling parameter) versus propagating inwards (NEGATIVE scaling parameter).

This implementation allows the user to set the weights between the propagation, advection curvature and shape prior term using methods SetPropagationScaling(), SetAdvectionScaling(), SetCurvatureScaling() and SetShapePriorScaling. In general, the larger the CurvatureScaling, the smoother the resulting contour. To follow the implementation in Leventon et al paper, set the PropagationScaling to $\lambda_1 \times c$ , the AdvectionScaling and CurvatureScaling both to $\lambda_1$ and the ShapePriorScaling to $\lambda_2$ .

OUTPUTS: The filter outputs a single, scalar, real-valued image. Negative values in the output image represent the inside of the segmented region and positive values in the image represent the outside of the segmented region. The zero crossings of the image correspond to the position of the propagating front.

: See SparseFieldLevelSetImageFilter and SegmentationLevelSetImageFilter for more information.

REFERENCES

: Leventon, M.E. et al. "Statistical Shape Influence in Geodesic Active Contours", CVPR 2000.

See Also: SegmentationLevelSetImageFilter; ShapePriorSegmentationLevelSetImageFilter; GeodesicActiveContourShapePriorLevelSetFunction; SparseFieldLevelSetImageFilter; ShapeSignedDistanceFunction

Examples:: Examples/Segmentation/GeodesicActiveContourShapePriorLevelSetImageFilter.cxx.

Definition at line 113 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h.

Public Types
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::FeatureImageType	FeatureImageType

typedef GeodesicActiveContourFunctionType::Pointer	GeodesicActiveContourFunctionPointer

typedef GeodesicActiveContourShapePriorLevelSetFunction < OutputImageType, FeatureImageType >	GeodesicActiveContourFunctionType

typedef Superclass::OutputImageType	OutputImageType

typedef Superclass::OutputPixelType	OutputPixelType

typedef SmartPointer< Self >	Pointer

typedef GeodesicActiveContourShapePriorLevelSetImageFilter	Self

typedef ShapePriorSegmentationLevelSetImageFilter < TInputImage, TFeatureImage, TOutputPixelType >	Superclass

typedef Superclass::ValueType	ValueType

Public Types inherited from itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >
typedef SmartPointer< const Self >	ConstPointer

typedef CostFunctionType::Pointer	CostFunctionPointer

typedef ShapePriorMAPCostFunctionBase < TFeatureImage, TOutputPixelType >	CostFunctionType

typedef Superclass::FeatureImageType	FeatureImageType

typedef NodeContainerType::Pointer	NodeContainerPointer

typedef CostFunctionType::NodeContainerType	NodeContainerType

typedef CostFunctionType::NodeType	NodeType

typedef OptimizerType::Pointer	OptimizerPointer

typedef SingleValuedNonLinearOptimizer	OptimizerType

typedef Superclass::OutputImageType	OutputImageType

typedef TOutputPixelType	OutputPixelType

typedef CostFunctionType::ParametersType	ParametersType

typedef SmartPointer< Self >	Pointer

typedef ShapePriorSegmentationLevelSetImageFilter	Self

typedef ShapeFunctionType::Pointer	ShapeFunctionPointer

typedef ShapePriorSegmentationFunctionType::ShapeFunctionType	ShapeFunctionType

typedef ShapePriorSegmentationLevelSetFunction < OutputImageType, FeatureImageType >	ShapePriorSegmentationFunctionType

typedef SegmentationLevelSetImageFilter < TInputImage, TFeatureImage, TOutputPixelType >	Superclass

typedef Superclass::ValueType	ValueType

Public Types inherited from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >
typedef SmartPointer< const Self >	ConstPointer

typedef TFeatureImage	FeatureImageType

typedef Superclass::IndexType	IndexType

typedef Superclass::InputImageType	InputImageType

typedef Image < TOutputPixelType, itkGetStaticConstMacro(InputImageDimension) >	OutputImageType

typedef SmartPointer< Self >	Pointer

typedef SegmentationLevelSetFunction < OutputImageType, FeatureImageType >	SegmentationFunctionType

typedef SegmentationLevelSetImageFilter	Self

typedef SegmentationFunctionType::ImageType	SpeedImageType

typedef SparseFieldLevelSetImageFilter < TInputImage, OutputImageType >	Superclass

typedef Superclass::TimeStepType	TimeStepType

typedef Superclass::ValueType	ValueType

typedef SegmentationFunctionType::VectorImageType	VectorImageType

Public Types inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
typedef SmartPointer< const Self >	ConstPointer

typedef OutputImageType::IndexType	IndexType

typedef TInputImage	InputImageType

typedef std::vector < LayerPointerType >	LayerListType

typedef ObjectStore < LayerNodeType >	LayerNodeStorageType

typedef SparseFieldLevelSetNode < IndexType >	LayerNodeType

typedef LayerType::Pointer	LayerPointerType

typedef SparseFieldLayer < LayerNodeType >	LayerType

typedef Superclass::NeighborhoodScalesType	NeighborhoodScalesType

typedef Image < TOutputPixelType, TInputImage::ImageDimension >	OutputImageType

typedef SmartPointer< Self >	Pointer

typedef Superclass::RadiusType	RadiusType

typedef SparseFieldLevelSetImageFilter	Self

typedef Image< StatusType, itkGetStaticConstMacro(ImageDimension) >	StatusImageType

typedef signed char	StatusType

typedef FiniteDifferenceImageFilter < TInputImage, Image < TOutputPixelType, TInputImage::ImageDimension > >	Superclass

typedef Superclass::TimeStepType	TimeStepType

typedef std::vector< ValueType >	UpdateBufferType

typedef OutputImageType::ValueType	ValueType

Public Types inherited from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
typedef SmartPointer< const Self >	ConstPointer

typedef FiniteDifferenceFunction < Image< TOutputPixelType, TInputImage::ImageDimension > >	FiniteDifferenceFunctionType

typedef TInputImage	InputImageType

typedef TInputImage::PixelType	InputPixelType

typedef NumericTraits < InputPixelType >::ValueType	InputPixelValueType

typedef FiniteDifferenceFunctionType::NeighborhoodScalesType	NeighborhoodScalesType

typedef Image < TOutputPixelType, TInputImage::ImageDimension >	OutputImageType

typedef Image < TOutputPixelType, TInputImage::ImageDimension > ::PixelType	OutputPixelType

typedef NumericTraits < OutputPixelType >::ValueType	OutputPixelValueType

typedef OutputPixelType	PixelType

typedef SmartPointer< Self >	Pointer

typedef FiniteDifferenceFunctionType::RadiusType	RadiusType

typedef FiniteDifferenceImageFilter	Self

typedef InPlaceImageFilter < TInputImage, Image < TOutputPixelType, TInputImage::ImageDimension > >	Superclass

typedef FiniteDifferenceFunctionType::TimeStepType	TimeStepType

Public Types inherited from itk::InPlaceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
typedef SmartPointer< const Self >	ConstPointer

typedef InputImageType::ConstPointer	InputImageConstPointer

typedef InputImageType::PixelType	InputImagePixelType

typedef InputImageType::Pointer	InputImagePointer

typedef InputImageType::RegionType	InputImageRegionType

typedef TInputImage	InputImageType

typedef Superclass::OutputImagePixelType	OutputImagePixelType

typedef Superclass::OutputImagePointer	OutputImagePointer

typedef Superclass::OutputImageRegionType	OutputImageRegionType

typedef Superclass::OutputImageType	OutputImageType

typedef SmartPointer< Self >	Pointer

typedef InPlaceImageFilter	Self

typedef ImageToImageFilter < TInputImage, Image < TOutputPixelType, TInputImage::ImageDimension > >	Superclass

Public Types inherited from itk::ImageToImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
typedef SmartPointer< const Self >	ConstPointer

typedef InputImageType::ConstPointer	InputImageConstPointer

typedef InputImageType::PixelType	InputImagePixelType

typedef InputImageType::Pointer	InputImagePointer

typedef InputImageType::RegionType	InputImageRegionType

typedef TInputImage	InputImageType

typedef Superclass::OutputImagePixelType	OutputImagePixelType

typedef Superclass::OutputImageRegionType	OutputImageRegionType

typedef SmartPointer< Self >	Pointer

typedef ImageToImageFilter	Self

typedef ImageSource< Image < TOutputPixelType, TInputImage::ImageDimension > >	Superclass

Public Types inherited from itk::ImageSource< Image< TOutputPixelType, TInputImage::ImageDimension > >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::DataObjectIdentifierType	DataObjectIdentifierType

typedef DataObject::Pointer	DataObjectPointer

typedef Superclass::DataObjectPointerArraySizeType	DataObjectPointerArraySizeType

typedef OutputImageType::PixelType	OutputImagePixelType

typedef OutputImageType::Pointer	OutputImagePointer

typedef OutputImageType::RegionType	OutputImageRegionType

typedef Image < TOutputPixelType, TInputImage::ImageDimension >	OutputImageType

typedef SmartPointer< Self >	Pointer

typedef ImageSource	Self

typedef ProcessObject	Superclass

Public Types inherited from itk::ProcessObject
typedef SmartPointer< const Self >	ConstPointer

typedef DataObject::DataObjectIdentifierType	DataObjectIdentifierType

typedef DataObject::Pointer	DataObjectPointer

typedef std::vector < DataObjectPointer >	DataObjectPointerArray

typedef DataObjectPointerArray::size_type	DataObjectPointerArraySizeType

typedef std::vector < DataObjectIdentifierType >	NameArray

typedef SmartPointer< Self >	Pointer

typedef ProcessObject	Self

typedef Object	Superclass

Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef Object	Self

typedef LightObject	Superclass

Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightObject	Self

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother () const

float	GetDerivativeSigma () const

virtual const char *	GetNameOfClass () const


void	SetDerivativeSigma (float value)

Public Member Functions inherited from itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >
virtual const ParametersType &	GetCurrentParameters () const

ValueType	GetShapePriorScaling () const

virtual ShapePriorSegmentationFunctionType *	GetShapePriorSegmentationFunction ()

virtual void	SetShapePriorSegmentationFunction (ShapePriorSegmentationFunctionType *s)

virtual void	SetShapeFunction (ShapeFunctionType *s)

virtual ShapeFunctionType *	GetModifiableShapeFunction ()

virtual const ShapeFunctionType *	GetShapeFunction () const

virtual void	SetCostFunction (CostFunctionType *_arg)

virtual CostFunctionType *	GetModifiableCostFunction ()

virtual const CostFunctionType *	GetCostFunction () const

virtual void	SetOptimizer (OptimizerType *_arg)

virtual OptimizerType *	GetModifiableOptimizer ()

virtual const OptimizerType *	GetOptimizer () const

virtual void	SetInitialParameters (ParametersType _arg)

virtual ParametersType	GetInitialParameters () const

void	SetShapePriorScaling (ValueType v)

Public Member Functions inherited from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >
void	GenerateAdvectionImage ()

void	GenerateSpeedImage ()

virtual const VectorImageType *	GetAdvectionImage () const

ValueType	GetAdvectionScaling () const

ValueType	GetCurvatureScaling () const

virtual FeatureImageType *	GetFeatureImage ()

double	GetMaximumCurvatureTimeStep () const

unsigned int	GetMaximumIterations ()

double	GetMaximumPropagationTimeStep () const

ValueType	GetPropagationScaling () const

virtual SegmentationFunctionType *	GetSegmentationFunction ()

virtual const SpeedImageType *	GetSpeedImage () const

bool	GetUseMinimalCurvature () const

bool	GetUseNegativeFeatures () const

void	SetAdvectionImage (VectorImageType *v)

virtual void	SetInitialImage (InputImageType *f)

void	SetInput2 (const FeatureImageType *input)

virtual void	SetSegmentationFunction (SegmentationFunctionType *s)

void	SetSpeedImage (SpeedImageType *s)

void	SetUseNegativeFeaturesOff ()

	typedef (Concept::HasNumericTraits< TOutputPixelType >) OutputHasNumericTraitsCheck

void	UseMinimalCurvatureOff ()

void	UseMinimalCurvatureOn ()

void	SetMaximumIterations (unsigned int i)

virtual void	SetFeatureImage (const FeatureImageType *f)

void	SetUseNegativeFeaturesOn ()

void	SetUseNegativeFeatures (bool u)

virtual void	SetReverseExpansionDirection (bool _arg)

virtual bool	GetReverseExpansionDirection () const

virtual void	ReverseExpansionDirectionOn ()

virtual void	ReverseExpansionDirectionOff ()

virtual void	SetAutoGenerateSpeedAdvection (bool _arg)

virtual bool	GetAutoGenerateSpeedAdvection () const

virtual void	AutoGenerateSpeedAdvectionOn ()

virtual void	AutoGenerateSpeedAdvectionOff ()

void	SetFeatureScaling (ValueType v)

void	SetPropagationScaling (ValueType v)

void	SetAdvectionScaling (ValueType v)

void	SetCurvatureScaling (ValueType v)

void	SetUseMinimalCurvature (bool b)

void	SetMaximumCurvatureTimeStep (double n)

void	SetMaximumPropagationTimeStep (double n)

Public Member Functions inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
virtual ::itk::LightObject::Pointer	CreateAnother () const

	typedef (Concept::EqualityComparable< typename Image< TOutputPixelType, TInputImage::ImageDimension >::PixelType >) OutputEqualityComparableCheck

	typedef (Concept::Convertible< double, typename Image< TOutputPixelType, TInputImage::ImageDimension >::PixelType >) DoubleConvertibleToOutputCheck

	typedef (Concept::OStreamWritable< typename Image< TOutputPixelType, TInputImage::ImageDimension >::PixelType >) OutputOStreamWritableCheck

virtual void	SetNumberOfLayers (unsigned int _arg)

virtual unsigned int	GetNumberOfLayers () const

virtual void	SetIsoSurfaceValue (ValueType _arg)

virtual ValueType	GetIsoSurfaceValue () const

virtual void	SetInterpolateSurfaceLocation (bool _arg)

virtual bool	GetInterpolateSurfaceLocation () const

void	InterpolateSurfaceLocationOn ()

void	InterpolateSurfaceLocationOff ()

Public Member Functions inherited from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
virtual const FiniteDifferenceFunctionType::Pointer &	GetDifferenceFunction () const

virtual const IdentifierType &	GetElapsedIterations () const

virtual bool	GetIsInitialized ()

virtual void	SetDifferenceFunction (FiniteDifferenceFunctionType *_arg)

virtual void	SetIsInitialized (bool _arg)

void	SetStateToInitialized ()

void	SetStateToUninitialized ()

virtual void	SetNumberOfIterations (IdentifierType _arg)

virtual const IdentifierType &	GetNumberOfIterations () const

virtual void	SetUseImageSpacing (bool _arg)

virtual void	UseImageSpacingOn ()

virtual void	UseImageSpacingOff ()

virtual const bool &	GetUseImageSpacing () const

virtual void	SetMaximumRMSError (double _arg)

virtual const double &	GetMaximumRMSError () const

virtual void	SetRMSChange (double _arg)

virtual const double &	GetRMSChange () const

virtual void	SetManualReinitialization (bool _arg)

virtual const bool &	GetManualReinitialization () const

virtual void	ManualReinitializationOn ()

virtual void	ManualReinitializationOff ()

Public Member Functions inherited from itk::InPlaceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
virtual bool	CanRunInPlace () const

virtual void	SetInPlace (bool _arg)

virtual bool	GetInPlace () const

virtual void	InPlaceOn ()

virtual void	InPlaceOff ()

Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
const InputImageType *	GetInput () const

const InputImageType *	GetInput (unsigned int idx) const

virtual void	PopBackInput () override

virtual void	PopFrontInput () override

virtual void	PushBackInput (const InputImageType *image)

virtual void	PushFrontInput (const InputImageType *image)

virtual void	SetInput (const InputImageType *image)

virtual void	SetInput (unsigned int, const TInputImage *image)

virtual void	SetCoordinateTolerance (double _arg)

virtual double	GetCoordinateTolerance () const

virtual void	SetDirectionTolerance (double _arg)

virtual double	GetDirectionTolerance () const

Public Member Functions inherited from itk::ImageSource< Image< TOutputPixelType, TInputImage::ImageDimension > >
OutputImageType *	GetOutput (unsigned int idx)

virtual void	GraftNthOutput (unsigned int idx, DataObject *output)

virtual void	GraftOutput (const DataObjectIdentifierType &key, DataObject *output)

OutputImageType *	GetOutput ()

const OutputImageType *	GetOutput () const

virtual void	GraftOutput (DataObject *output)

virtual ProcessObject::DataObjectPointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override

virtual ProcessObject::DataObjectPointer	MakeOutput (const ProcessObject::DataObjectIdentifierType &) override

Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()

virtual void	AbortGenerateDataOn ()

virtual void	EnlargeOutputRequestedRegion (DataObject *)

virtual const bool &	GetAbortGenerateData () const

DataObjectPointerArray	GetIndexedInputs ()

DataObjectPointerArray	GetIndexedOutputs ()

NameArray	GetInputNames () const

DataObjectPointerArray	GetInputs ()

MultiThreader *	GetMultiThreader () const

DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const

DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const

DataObjectPointerArraySizeType	GetNumberOfInputs () const

DataObjectPointerArraySizeType	GetNumberOfOutputs () const

virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const

NameArray	GetOutputNames () const

DataObjectPointerArray	GetOutputs ()

virtual const float &	GetProgress () const

NameArray	GetRequiredInputNames () const

bool	HasInput (const DataObjectIdentifierType &key) const

bool	HasOutput (const DataObjectIdentifierType &key) const

virtual void	PrepareOutputs ()

virtual void	PropagateRequestedRegion (DataObject *output)

virtual void	ResetPipeline ()

virtual void	SetAbortGenerateData (bool _arg)

virtual void	Update ()

virtual void	UpdateLargestPossibleRegion ()

virtual void	UpdateOutputData (DataObject *output)

virtual void	UpdateOutputInformation ()

void	UpdateProgress (float progress)

void	SetProgress (float progress)

virtual void	SetReleaseDataFlag (bool flag)

virtual bool	GetReleaseDataFlag () const

void	ReleaseDataFlagOn ()

void	ReleaseDataFlagOff ()

virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)

virtual const bool &	GetReleaseDataBeforeUpdateFlag () const

virtual void	ReleaseDataBeforeUpdateFlagOn ()

virtual void	ReleaseDataBeforeUpdateFlagOff ()

virtual void	SetNumberOfThreads (ThreadIdType _arg)

virtual const ThreadIdType &	GetNumberOfThreads () const

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)

unsigned long	AddObserver (const EventObject &event, Command *) const

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary ()

const MetaDataDictionary &	GetMetaDataDictionary () const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

virtual void	Register () const override

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag)

void	SetDebug (bool debugFlag) const

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

virtual void	SetReferenceCount (int) override

virtual void	UnRegister () const noexceptoverride

virtual void	SetObjectName (std::string _arg)

virtual const std::string &	GetObjectName () const

Public Member Functions inherited from itk::LightObject
virtual void	Delete ()

virtual int	GetReferenceCount () const

	itkCloneMacro (Self)

void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
static Pointer	New ()

Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool flag)

Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Protected Member Functions
void	GenerateData () override

	GeodesicActiveContourShapePriorLevelSetImageFilter ()

	GeodesicActiveContourShapePriorLevelSetImageFilter (const Self &)

void	operator= (const Self &)

virtual void	PrintSelf (std::ostream &os, Indent indent) const override

	~GeodesicActiveContourShapePriorLevelSetImageFilter ()

Protected Member Functions inherited from itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >
void	ExtractActiveRegion (NodeContainerType *ptr)

void	GenerateData () override

virtual void	InitializeIteration () override

	ShapePriorSegmentationLevelSetImageFilter ()

virtual	~ShapePriorSegmentationLevelSetImageFilter ()

Protected Member Functions inherited from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >
	SegmentationLevelSetImageFilter ()

virtual	~SegmentationLevelSetImageFilter ()

Protected Member Functions inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
void	AllocateUpdateBuffer () override

void	ApplyUpdate (const TimeStepType &dt) override

TimeStepType	CalculateChange () override

virtual ValueType	CalculateUpdateValue (const IndexType &, const TimeStepType &dt, const ValueType &value, const ValueType &change)

void	ConstructActiveLayer ()

void	ConstructLayer (StatusType from, StatusType to)

void	CopyInputToOutput () override

virtual ValueType	GetValueOne () const

virtual ValueType	GetValueZero () const

void	Initialize () override

void	InitializeActiveLayerValues ()

virtual void	InitializeBackgroundPixels ()

virtual void	PostProcessOutput () override

void	ProcessOutsideList (LayerType *OutsideList, StatusType ChangeToStatus)

void	ProcessStatusList (LayerType InputList, LayerType OutputList, StatusType ChangeToStatus, StatusType SearchForStatus)

void	PropagateAllLayerValues ()

void	PropagateLayerValues (StatusType from, StatusType to, StatusType promote, int InOrOut)

	SparseFieldLevelSetImageFilter ()

void	UpdateActiveLayerValues (TimeStepType dt, LayerType StatusUpList, LayerType StatusDownList)

	~SparseFieldLevelSetImageFilter ()

Protected Member Functions inherited from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
	FiniteDifferenceImageFilter ()

virtual void	GenerateInputRequestedRegion () override

virtual bool	Halt ()

virtual TimeStepType	ResolveTimeStep (const std::vector< TimeStepType > &timeStepList, const std::vector< bool > &valid) const

virtual void	SetElapsedIterations (IdentifierType _arg)

virtual bool	ThreadedHalt (void *)

virtual	~FiniteDifferenceImageFilter ()

Protected Member Functions inherited from itk::InPlaceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
virtual void	AllocateOutputs () override

virtual bool	GetRunningInPlace () const

	InPlaceImageFilter ()

virtual void	ReleaseInputs () override

	~InPlaceImageFilter ()

Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)

virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)

	ImageToImageFilter ()

virtual void	VerifyInputInformation () override

	~ImageToImageFilter ()

void	PushBackInput (const DataObject *input) override

void	PushFrontInput (const DataObject *input) override

Protected Member Functions inherited from itk::ImageSource< Image< TOutputPixelType, TInputImage::ImageDimension > >
virtual void	AfterThreadedGenerateData ()

virtual void	BeforeThreadedGenerateData ()

virtual const ImageRegionSplitterBase *	GetImageRegionSplitter () const

	ImageSource ()

virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)

virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)

virtual	~ImageSource ()

Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)

virtual void	AddOutput (DataObject *output)

bool	AddRequiredInputName (const DataObjectIdentifierType &)

bool	AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)

virtual void	CacheInputReleaseDataFlags ()

virtual void	GenerateOutputInformation ()

virtual void	GenerateOutputRequestedRegion (DataObject *output)

DataObject *	GetInput (const DataObjectIdentifierType &key)

const DataObject *	GetInput (const DataObjectIdentifierType &key) const

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs () const

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs () const

bool	IsIndexedInputName (const DataObjectIdentifierType &) const

bool	IsIndexedOutputName (const DataObjectIdentifierType &) const

bool	IsRequiredInputName (const DataObjectIdentifierType &) const

	itkLegacyMacro (virtual void RemoveOutput(DataObject *output))

	itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))

	itkLegacyMacro (virtual void RemoveInput(DataObject *input))

	itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))

DataObjectPointerArraySizeType	MakeIndexFromInputName (const DataObjectIdentifierType &name) const

DataObjectPointerArraySizeType	MakeIndexFromOutputName (const DataObjectIdentifierType &name) const

DataObjectIdentifierType	MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const

DataObjectIdentifierType	MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const

	ProcessObject ()

virtual void	PropagateResetPipeline ()

virtual void	RemoveInput (const DataObjectIdentifierType &key)

virtual void	RemoveInput (DataObjectPointerArraySizeType)

virtual void	RemoveOutput (const DataObjectIdentifierType &key)

virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)

bool	RemoveRequiredInputName (const DataObjectIdentifierType &)

virtual void	RestoreInputReleaseDataFlags ()

virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)

virtual void	SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)

virtual void	SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)

void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)

void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)

virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)

virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)

virtual void	SetOutput (const DataObjectIdentifierType &key, DataObject *output)

virtual void	SetPrimaryInput (DataObject *input)

virtual void	SetPrimaryOutput (DataObject *output)

void	SetRequiredInputNames (const NameArray &)

virtual void	VerifyPreconditions ()

	~ProcessObject ()

DataObject *	GetInput (DataObjectPointerArraySizeType idx)

const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const

DataObject *	GetPrimaryInput ()

const DataObject *	GetPrimaryInput () const

virtual void	SetPrimaryInputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryInputName (void) const

DataObject *	GetOutput (const DataObjectIdentifierType &key)

const DataObject *	GetOutput (const DataObjectIdentifierType &key) const

virtual void	SetPrimaryOutputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryOutputName (void) const

DataObject *	GetOutput (DataObjectPointerArraySizeType idx)

const DataObject *	GetOutput (DataObjectPointerArraySizeType idx) const

DataObject *	GetPrimaryOutput ()

const DataObject *	GetPrimaryOutput () const

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &time)

virtual	~Object ()

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Private Attributes
GeodesicActiveContourFunctionPointer	m_GeodesicActiveContourFunction

Additional Inherited Members
Static Public Attributes inherited from itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >
static const unsigned int	ImageDimension = TInputImage::ImageDimension

Static Public Attributes inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
static const unsigned int	ImageDimension

Static Public Attributes inherited from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
static const unsigned int	ImageDimension

Static Public Attributes inherited from itk::InPlaceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
static const unsigned int	InputImageDimension

static const unsigned int	OutputImageDimension

Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
static const unsigned int	InputImageDimension

static const unsigned int	OutputImageDimension

Static Public Attributes inherited from itk::ImageSource< Image< TOutputPixelType, TInputImage::ImageDimension > >
static const unsigned int	OutputImageDimension

Protected Types inherited from itk::ImageToImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension) >	InputToOutputRegionCopierType

typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension) >	OutputToInputRegionCopierType

Static Protected Member Functions inherited from itk::ImageSource< Image< TOutputPixelType, TInputImage::ImageDimension > >
static const ImageRegionSplitterBase *	GetGlobalDefaultSplitter ()

static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)

Protected Attributes inherited from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >
bool	m_AutoGenerateSpeedAdvection

bool	m_ReverseExpansionDirection

Protected Attributes inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
double	m_ConstantGradientValue

const InputImageType *	m_InputImage

bool	m_InterpolateSurfaceLocation

ValueType	m_IsoSurfaceValue

LayerNodeStorageType::Pointer	m_LayerNodeStore

LayerListType	m_Layers

SparseFieldCityBlockNeighborList < NeighborhoodIterator < OutputImageType > >	m_NeighborList

unsigned int	m_NumberOfLayers

OutputImageType *	m_OutputImage

OutputImageType::Pointer	m_ShiftedImage

StatusImageType::Pointer	m_StatusImage

UpdateBufferType	m_UpdateBuffer

Protected Attributes inherited from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
IdentifierType	m_ElapsedIterations

bool	m_IsInitialized

bool	m_ManualReinitialization

double	m_MaximumRMSError

IdentifierType	m_NumberOfIterations

double	m_RMSChange

Protected Attributes inherited from itk::ProcessObject
TimeStamp	m_OutputInformationMTime

bool	m_Updating

Protected Attributes inherited from itk::LightObject
AtomicInt< int >	m_ReferenceCount

Static Protected Attributes inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
static StatusType	m_StatusActiveChangingDown

static StatusType	m_StatusActiveChangingUp

static StatusType	m_StatusBoundaryPixel

static StatusType	m_StatusChanging

static StatusType	m_StatusNull

static ValueType	m_ValueOne

static ValueType	m_ValueZero

Member Typedef Documentation

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef SmartPointer< const Self > itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ConstPointer

Definition at line 125 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef Superclass::FeatureImageType itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::FeatureImageType

Definition at line 130 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef GeodesicActiveContourFunctionType::Pointer itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GeodesicActiveContourFunctionPointer

Definition at line 138 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef GeodesicActiveContourShapePriorLevelSetFunction< OutputImageType, FeatureImageType > itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GeodesicActiveContourFunctionType

Type of the segmentation function

Definition at line 136 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef Superclass::OutputImageType itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::OutputImageType

Definition at line 129 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef Superclass::OutputPixelType itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::OutputPixelType

Definition at line 131 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef SmartPointer< Self > itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::Pointer

Definition at line 124 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef GeodesicActiveContourShapePriorLevelSetImageFilter itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::Self

Standard class typedefs

Definition at line 120 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType > itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::Superclass

Definition at line 122 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

typedef Superclass::ValueType itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ValueType

Inherited typedef from the superclass.

Definition at line 128 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h.

Constructor & Destructor Documentation

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::~GeodesicActiveContourShapePriorLevelSetImageFilter ( )

inlineprotected

Definition at line 165 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GeodesicActiveContourShapePriorLevelSetImageFilter ( )

protected

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GeodesicActiveContourShapePriorLevelSetImageFilter ( const Self & )

protected

Member Function Documentation

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual::itk::LightObject::Pointer itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::CreateAnother ( ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GenerateData ( )

overrideprotectedvirtual

Overridden from Superclass to handle the case when PropagationScaling is zero and CurvatureScaling is non-zero.

Reimplemented from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

float itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetDerivativeSigma ( ) const

inline

Get the value of sigma used to compute the edge potential map derivatives.

Definition at line 161 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h.

References itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_GeodesicActiveContourFunction.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual const char* itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

static Pointer itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::New ( )

static

Method for creation through the object factory

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::operator= ( const Self & )

protected

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual void itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ShapePriorSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetDerivativeSigma ( float value )

inline

Set the value of sigma used to compute the edge potential map derivatives

Definition at line 149 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h.

References itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_GeodesicActiveContourFunction, and itk::Object::Modified().

Member Data Documentation

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

GeodesicActiveContourFunctionPointer itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_GeodesicActiveContourFunction

private

Definition at line 184 of file itkGeodesicActiveContourShapePriorLevelSetImageFilter.h.

Referenced by itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetDerivativeSigma(), and itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetDerivativeSigma().

The documentation for this class was generated from the following file:

itkGeodesicActiveContourShapePriorLevelSetImageFilter.h

Detailed Description

template<typename TInputImage, typename TFeatureImage, typename TOutputPixelType = float> class itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<typename TInputImage, typename TFeatureImage, typename TOutputPixelType = float>
class itk::GeodesicActiveContourShapePriorLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >