itk::MeshIOBase Class Reference

#include <itkMeshIOBase.h>

Inheritance diagram for itk::MeshIOBase:

Collaboration diagram for itk::MeshIOBase:

Detailed Description

Abstract superclass defines mesh IO interface.

MeshIOBase is a class that reads and/or writes Mesh / QuadEdgeMesh data of a particular format (such as PNG or raw binary). The MeshIOBase encapsulates both the reading and writing of data. The MeshIOBase is used by the MeshFileReader class (to read data) and the MeshFileWriter (to write data) into a single file. Normally the user does not directly manipulate this class other than to instantiate it, set the FileName, and assign it to a MeshFileReader or MeshFileWriter.

A Pluggable factory pattern is used this allows different kinds of readers to be registered (even at run time) without having to modify the code in this class.

Author

Wanlin Zhu. Uviversity of New South Wales, Australia.

See Also

MeshFileWriter

MeshFileReader

Definition at line 69 of file itkMeshIOBase.h.

Classes
struct	MapComponentType
class	UnknownType

Public Types
typedef std::vector< std::string >	ArrayOfExtensionsType
enum	ByteOrder {   BigEndian,   LittleEndian,   OrderNotApplicable }
enum	CellGeometryType {   VERTEX_CELL = 0,   LINE_CELL,   TRIANGLE_CELL,   QUADRILATERAL_CELL,   POLYGON_CELL,   TETRAHEDRON_CELL,   HEXAHEDRON_CELL,   QUADRATIC_EDGE_CELL,   QUADRATIC_TRIANGLE_CELL,   LAST_ITK_CELL,   MAX_ITK_CELLS = 255 }
typedef SmartPointer< const Self >	ConstPointer
enum	FileType {   ASCII,   BINARY,   TYPENOTAPPLICABLE }
enum	IOComponentType {   UNKNOWNCOMPONENTTYPE,   UCHAR,   CHAR,   USHORT,   SHORT,   UINT,   INT,   ULONG,   LONG,   LONGLONG,   ULONGLONG,   FLOAT,   DOUBLE,   LDOUBLE }
enum	IOPixelType {   UNKNOWNPIXELTYPE,   SCALAR,   RGB,   RGBA,   OFFSET,   VECTOR,   POINT,   COVARIANTVECTOR,   SYMMETRICSECONDRANKTENSOR,   DIFFUSIONTENSOR3D,   COMPLEX,   FIXEDARRAY,   ARRAY,   MATRIX,   VARIABLELENGTHVECTOR,   VARIABLESIZEMATRIX }
typedef SmartPointer< Self >	Pointer
typedef MeshIOBase	Self
typedef IdentifierType	SizeValueType
typedef std::streamoff	StreamOffsetType
typedef LightProcessObject	Superclass
Public Types inherited from itk::LightProcessObject
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef LightProcessObject	Self
typedef Object	Superclass
Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef Object	Self
typedef LightObject	Superclass
Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef LightObject	Self

Public Member Functions
virtual bool	CanReadFile (const char *)=0
virtual bool	CanWriteFile (const char *)=0
std::string	GetByteOrderAsString (ByteOrder) const
unsigned int	GetComponentSize (IOComponentType componentType) const
std::string	GetComponentTypeAsString (IOComponentType) const
std::string	GetFileTypeAsString (FileType) const
virtual const char *	GetNameOfClass () const
std::string	GetPixelTypeAsString (IOPixelType) const
const ArrayOfExtensionsType &	GetSupportedReadExtensions () const
const ArrayOfExtensionsType &	GetSupportedWriteExtensions () const
virtual void	ReadCellData (void *buffer)=0
virtual void	ReadCells (void *buffer)=0
virtual void	ReadMeshInformation ()=0
virtual void	ReadPointData (void *buffer)=0
virtual void	ReadPoints (void *buffer)=0
void	SetByteOrderToBigEndian ()
void	SetByteOrderToLittleEndian ()
void	SetFileTypeToASCII ()
void	SetFileTypeToBinary ()
template<typename T >
void	SetPixelType (const T &, bool UsePointPixel=true)
template<typename T >
void	SetPixelType (const RGBPixel< T > &, bool UsePointPixel=true)
template<typename T >
void	SetPixelType (const RGBAPixel< T > &, bool UsePointPixel=true)
template<typename T , unsigned int VLength>
void	SetPixelType (const Vector< T, VLength > &, bool UsePointPixel=true)
template<typename T , unsigned int VLength>
void	SetPixelType (const CovariantVector< T, VLength > &, bool UsePointPixel=true)
template<typename T , unsigned int VLength>
void	SetPixelType (const FixedArray< T, VLength > &, bool UsePointPixel=true)
template<typename T , unsigned int VLength>
void	SetPixelType (const SymmetricSecondRankTensor< T, VLength >, bool UsePointPixel=true)
template<typename T >
void	SetPixelType (const DiffusionTensor3D< T > &, bool UsePointPixel=true)
template<typename T , unsigned int NR, unsigned int NC>
void	SetPixelType (const Matrix< T, NR, NC > &, bool UsePointPixel=true)
template<typename T >
void	SetPixelType (const std::complex< T > &, bool UsePointPixel=true)
template<typename T >
void	SetPixelType (const Array< T > &array, bool UsePointPixel=true)
template<typename T >
void	SetPixelType (const VariableLengthVector< T > &vector, bool UsePointPixel=true)
template<typename T >
void	SetPixelType (const VariableSizeMatrix< T > &matrix, bool UsePointPixel=true)
virtual void	Write ()=0
virtual void	WriteCellData (void *buffer)=0
virtual void	WriteCells (void *buffer)=0
virtual void	WriteMeshInformation ()=0
virtual void	WritePointData (void *buffer)=0
virtual void	WritePoints (void *buffer)=0
virtual void	SetFileName (const char *_arg)
virtual const char *	GetFileName () const
virtual void	SetPointPixelType (const IOPixelType _arg)
virtual IOPixelType	GetPointPixelType () const
virtual void	SetCellPixelType (const IOPixelType _arg)
virtual IOPixelType	GetCellPixelType () const
virtual void	SetPointComponentType (const IOComponentType _arg)
virtual IOComponentType	GetPointComponentType () const
virtual void	SetCellComponentType (const IOComponentType _arg)
virtual IOComponentType	GetCellComponentType () const
virtual void	SetPointPixelComponentType (const IOComponentType _arg)
virtual IOComponentType	GetPointPixelComponentType () const
virtual void	SetCellPixelComponentType (const IOComponentType _arg)
virtual IOComponentType	GetCellPixelComponentType () const
virtual void	SetNumberOfPointPixelComponents (unsigned int _arg)
virtual unsigned int	GetNumberOfPointPixelComponents () const
virtual void	SetNumberOfCellPixelComponents (unsigned int _arg)
virtual unsigned int	GetNumberOfCellPixelComponents () const
virtual void	SetPointDimension (unsigned int _arg)
virtual unsigned int	GetPointDimension () const
virtual void	SetNumberOfPoints (SizeValueType _arg)
virtual SizeValueType	GetNumberOfPoints () const
virtual void	SetNumberOfCells (SizeValueType _arg)
virtual SizeValueType	GetNumberOfCells () const
virtual void	SetNumberOfPointPixels (SizeValueType _arg)
virtual SizeValueType	GetNumberOfPointPixels () const
virtual void	SetNumberOfCellPixels (SizeValueType _arg)
virtual SizeValueType	GetNumberOfCellPixels () const
virtual void	SetCellBufferSize (SizeValueType _arg)
virtual SizeValueType	GetCellBufferSize () const
virtual void	SetUpdatePoints (bool _arg)
virtual bool	GetUpdatePoints () const
virtual void	SetUpdateCells (bool _arg)
virtual bool	GetUpdateCells () const
virtual void	SetUpdatePointData (bool _arg)
virtual bool	GetUpdatePointData () const
virtual void	SetUpdateCellData (bool _arg)
virtual bool	GetUpdateCellData () const
virtual void	SetFileType (const FileType _arg)
virtual FileType	GetFileType () const
virtual void	SetByteOrder (const ByteOrder _arg)
virtual ByteOrder	GetByteOrder () const
virtual void	SetUseCompression (bool _arg)
virtual bool	GetUseCompression () const
virtual void	UseCompressionOn ()
virtual void	UseCompressionOff ()
Public Member Functions inherited from itk::LightProcessObject
virtual void	AbortGenerateDataOff ()
virtual void	AbortGenerateDataOn ()
virtual ::itk::LightObject::Pointer	CreateAnother () const
virtual const bool &	GetAbortGenerateData () const
virtual void	SetAbortGenerateData (bool _arg)
virtual void	UpdateOutputData ()
void	UpdateProgress (float amount)
virtual void	SetProgress (float _arg)
virtual const float &	GetProgress () const
Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
virtual void	DebugOff () const
virtual void	DebugOn () const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
MetaDataDictionary &	GetMetaDataDictionary ()
const MetaDataDictionary &	GetMetaDataDictionary () const
virtual ModifiedTimeType	GetMTime () const
virtual const TimeStamp &	GetTimeStamp () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
virtual void	Register () const override
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
void	SetDebug (bool debugFlag) const
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetReferenceCount (int) override
virtual void	UnRegister () const noexceptoverride
virtual void	SetObjectName (std::string _arg)
virtual const std::string &	GetObjectName () const
Public Member Functions inherited from itk::LightObject
virtual void	Delete ()
virtual int	GetReferenceCount () const
	itkCloneMacro (Self)
void	Print (std::ostream &os, Indent indent=0) const

Protected Member Functions
void	AddSupportedReadExtension (const char *extension)
void	AddSupportedWriteExtension (const char *extension)
	MeshIOBase ()
virtual void	PrintSelf (std::ostream &os, Indent indent) const override
template<typename T >
void	ReadBufferAsBinary (T *buffer, std::ifstream &inputFile, SizeValueType numberOfComponents)
virtual	~MeshIOBase ()
template<typename T >
void	ReadBufferAsAscii (T *buffer, std::ifstream &inputFile, SizeValueType numberOfComponents)
template<typename T >
void	WriteBufferAsAscii (T *buffer, std::ofstream &outputFile, SizeValueType numberOfLines, SizeValueType numberOfComponents)
template<typename TOutput , typename TInput >
void	WriteBufferAsBinary (TInput *buffer, std::ofstream &outputFile, SizeValueType numberOfComponents)
template<typename TInput , typename TOutput >
void	ReadCellsBuffer (TInput *input, TOutput *output)
template<typename TInput , typename TOutput >
void	ReadCellsBuffer (TInput *input, TOutput *output, MeshIOBase::CellGeometryType type)
template<typename TInput , typename TOutput >
void	WriteCellsBuffer (TInput *input, TOutput *output, CellGeometryType cellType, unsigned int numberOfPoints, SizeValueType numberOfCells)
template<typename TInput , typename TOutput >
void	WriteCellsBuffer (TInput *input, TOutput *output, CellGeometryType cellType, SizeValueType numberOfCells)
Protected Member Functions inherited from itk::LightProcessObject
virtual void	GenerateData ()
	LightProcessObject ()
	~LightProcessObject ()
Protected Member Functions inherited from itk::Object
	Object ()
bool	PrintObservers (std::ostream &os, Indent indent) const
virtual void	SetTimeStamp (const TimeStamp &time)
virtual	~Object ()
Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()

Protected Attributes
ByteOrder	m_ByteOrder
SizeValueType	m_CellBufferSize
IOComponentType	m_CellComponentType
IOComponentType	m_CellPixelComponentType
IOPixelType	m_CellPixelType
std::string	m_FileName
FileType	m_FileType
unsigned int	m_NumberOfCellPixelComponents
SizeValueType	m_NumberOfCellPixels
SizeValueType	m_NumberOfCells
unsigned int	m_NumberOfPointPixelComponents
SizeValueType	m_NumberOfPointPixels
SizeValueType	m_NumberOfPoints
IOComponentType	m_PointComponentType
SizeValueType	m_PointDimension
IOComponentType	m_PointPixelComponentType
IOPixelType	m_PointPixelType
bool	m_UpdateCellData
bool	m_UpdateCells
bool	m_UpdatePointData
bool	m_UpdatePoints
bool	m_UseCompression
Protected Attributes inherited from itk::LightObject
AtomicInt< int >	m_ReferenceCount

Private Member Functions
	MeshIOBase (const Self &)
void	operator= (const Self &)

Private Attributes
ArrayOfExtensionsType	m_SupportedReadExtensions
ArrayOfExtensionsType	m_SupportedWriteExtensions

Additional Inherited Members
Static Public Member Functions inherited from itk::LightProcessObject
static Pointer	New ()
Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOff ()
static void	GlobalWarningDisplayOn ()
static Pointer	New ()
static void	SetGlobalWarningDisplay (bool flag)
Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()
static Pointer	New ()

Member Typedef Documentation

typedef std::vector< std::string > itk::MeshIOBase::ArrayOfExtensionsType

Type for the list of strings to be used for extensions.

Definition at line 79 of file itkMeshIOBase.h.

typedef SmartPointer< const Self > itk::MeshIOBase::ConstPointer

Definition at line 75 of file itkMeshIOBase.h.

typedef SmartPointer< Self > itk::MeshIOBase::Pointer

Definition at line 76 of file itkMeshIOBase.h.

typedef MeshIOBase itk::MeshIOBase::Self

Standard class typedefs.

Definition at line 73 of file itkMeshIOBase.h.

typedef IdentifierType itk::MeshIOBase::SizeValueType

Definition at line 84 of file itkMeshIOBase.h.

typedef std::streamoff itk::MeshIOBase::StreamOffsetType

Type for representing size of bytes, and or positions along a file

Definition at line 82 of file itkMeshIOBase.h.

typedef LightProcessObject itk::MeshIOBase::Superclass

Definition at line 74 of file itkMeshIOBase.h.

Member Enumeration Documentation

enum itk::MeshIOBase::ByteOrder

Enums used to specify byte order; whether Big Endian or Little Endian. Some subclasses use this, some ignore it.

Enumerator
BigEndian
LittleEndian
OrderNotApplicable

Definition at line 121 of file itkMeshIOBase.h.

enum itk::MeshIOBase::CellGeometryType

Enums used to specify cell type

Enumerator
VERTEX_CELL
LINE_CELL
TRIANGLE_CELL
QUADRILATERAL_CELL
POLYGON_CELL
TETRAHEDRON_CELL
HEXAHEDRON_CELL
QUADRATIC_EDGE_CELL
QUADRATIC_TRIANGLE_CELL
LAST_ITK_CELL
MAX_ITK_CELLS

Definition at line 124 of file itkMeshIOBase.h.

enum itk::MeshIOBase::FileType

Enums used to specify write style: whether binary or ASCII. Some subclasses use this, some ignore it.

Enumerator
ASCII
BINARY
TYPENOTAPPLICABLE

Definition at line 117 of file itkMeshIOBase.h.

enum itk::MeshIOBase::IOComponentType

Enums used to manipulate the component type. The component type refers to the actual storage class associated with either a SCALAR pixel type or elements of a compound pixel.

Enumerator
UNKNOWNCOMPONENTTYPE
UCHAR
CHAR
USHORT
SHORT
UINT
INT
ULONG
LONG
LONGLONG
ULONGLONG
FLOAT
DOUBLE
LDOUBLE

Definition at line 112 of file itkMeshIOBase.h.

enum itk::MeshIOBase::IOPixelType

Enums used to manipulate the point/cell pixel type. The pixel type provides context for automatic data conversions (for instance, RGB to SCALAR, VECTOR to SCALAR).

Enumerator
UNKNOWNPIXELTYPE
SCALAR
RGB
RGBA
OFFSET
VECTOR
POINT
COVARIANTVECTOR
SYMMETRICSECONDRANKTENSOR
DIFFUSIONTENSOR3D
COMPLEX
FIXEDARRAY
ARRAY
MATRIX
VARIABLELENGTHVECTOR
VARIABLESIZEMATRIX

Definition at line 104 of file itkMeshIOBase.h.

Constructor & Destructor Documentation

itk::MeshIOBase::MeshIOBase ( )

protected

virtual itk::MeshIOBase::~MeshIOBase ( )

inlineprotectedvirtual

Definition at line 523 of file itkMeshIOBase.h.

itk::MeshIOBase::MeshIOBase ( const Self &  )

private

Member Function Documentation

void itk::MeshIOBase::AddSupportedReadExtension ( const char *  extension )

protected

Insert an extension to the list of supported extensions for reading.

void itk::MeshIOBase::AddSupportedWriteExtension ( const char *  extension )

protected

Insert an extension to the list of supported extensions for writing.

virtual bool itk::MeshIOBase::CanReadFile ( const char *  )

pure virtual

Determine the file type. Returns true if this MeshIO can read the file specified.

Implemented in itk::GiftiMeshIO, itk::VTKPolyDataMeshIO, itk::FreeSurferBinaryMeshIO, itk::BYUMeshIO, itk::FreeSurferAsciiMeshIO, itk::OFFMeshIO, itk::STLMeshIO, and itk::OBJMeshIO.

virtual bool itk::MeshIOBase::CanWriteFile ( const char *  )

pure virtual

Writes the data to disk from the memory buffer provided. Make sure that the IORegions has been set properly.

Implemented in itk::GiftiMeshIO, itk::STLMeshIO, itk::VTKPolyDataMeshIO, itk::FreeSurferBinaryMeshIO, itk::BYUMeshIO, itk::FreeSurferAsciiMeshIO, itk::OFFMeshIO, and itk::OBJMeshIO.

virtual ByteOrder itk::MeshIOBase::GetByteOrder ( ) const

virtual

These methods indicate the byte ordering of the file you are trying to read in. These methods will then either swap or not swap the bytes depending on the byte ordering of the machine it is being run on. For example, reading in a BigEndian file on a BigEndian machine will result in no swapping. Trying to read the same file on a LittleEndian machine will result in swapping. Note: most UNIX machines are BigEndian while PC's and VAX's are LittleEndian. So if the file you are reading in was generated on a VAX or PC, SetByteOrderToLittleEndian() otherwise SetByteOrderToBigEndian(). Some MeshIOBase subclasses ignore these methods.

std::string itk::MeshIOBase::GetByteOrderAsString

(

ByteOrder

)

const

Convenience method returns the ByteOrder as a string. This can be used for writing output files.

virtual SizeValueType itk::MeshIOBase::GetCellBufferSize ( ) const

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

virtual IOComponentType itk::MeshIOBase::GetCellComponentType ( ) const

virtual

Set/Get the component type of the point, cell, point data and cell data. This is always a native type.

virtual IOComponentType itk::MeshIOBase::GetCellPixelComponentType ( ) const

virtual

Set/Get the component type of the point, cell, point data and cell data. This is always a native type.

virtual IOPixelType itk::MeshIOBase::GetCellPixelType ( ) const

virtual

Set/Get the type of the point/cell pixel. The PixelTypes provides context to the IO mechanisms for data conversions. PixelTypes can be SCALAR, RGB, RGBA, VECTOR, COVARIANTVECTOR, POINT, INDEX. If the PIXELTYPE is SCALAR, then the NumberOfComponents should be 1. Any other of PIXELTYPE will have more than one component.

unsigned int itk::MeshIOBase::GetComponentSize

(

IOComponentType

componentType

)

const

std::string itk::MeshIOBase::GetComponentTypeAsString

(

IOComponentType

)

const

Convenience method returns the IOComponentType as a string. This can be used for writing output files.

virtual const char* itk::MeshIOBase::GetFileName ( ) const

virtual

Set/Get the name of the file to be read.

virtual FileType itk::MeshIOBase::GetFileType ( ) const

virtual

These methods control whether the file is written binary or ASCII. Many file formats (i.e., subclasses) ignore this flag.

std::string itk::MeshIOBase::GetFileTypeAsString

(

FileType

)

const

Convenience method returns the FileType as a string. This can be used for writing output files.

virtual const char* itk::MeshIOBase::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::LightProcessObject.

Reimplemented in itk::VTKPolyDataMeshIO, itk::GiftiMeshIO, itk::FreeSurferBinaryMeshIO, itk::BYUMeshIO, itk::FreeSurferAsciiMeshIO, itk::OFFMeshIO, itk::STLMeshIO, and itk::OBJMeshIO.

virtual unsigned int itk::MeshIOBase::GetNumberOfCellPixelComponents ( ) const

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

virtual SizeValueType itk::MeshIOBase::GetNumberOfCellPixels ( ) const

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

virtual SizeValueType itk::MeshIOBase::GetNumberOfCells ( ) const

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

virtual unsigned int itk::MeshIOBase::GetNumberOfPointPixelComponents ( ) const

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

virtual SizeValueType itk::MeshIOBase::GetNumberOfPointPixels ( ) const

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

virtual SizeValueType itk::MeshIOBase::GetNumberOfPoints ( ) const

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

std::string itk::MeshIOBase::GetPixelTypeAsString

(

IOPixelType

)

const

Convenience method returns the IOPixelType as a string. This can be used for writing output files.

virtual IOComponentType itk::MeshIOBase::GetPointComponentType ( ) const

virtual

Set/Get the component type of the point, cell, point data and cell data. This is always a native type.

virtual unsigned int itk::MeshIOBase::GetPointDimension ( ) const

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

virtual IOComponentType itk::MeshIOBase::GetPointPixelComponentType ( ) const

virtual

Set/Get the component type of the point, cell, point data and cell data. This is always a native type.

virtual IOPixelType itk::MeshIOBase::GetPointPixelType ( ) const

virtual

Set/Get the type of the point/cell pixel. The PixelTypes provides context to the IO mechanisms for data conversions. PixelTypes can be SCALAR, RGB, RGBA, VECTOR, COVARIANTVECTOR, POINT, INDEX. If the PIXELTYPE is SCALAR, then the NumberOfComponents should be 1. Any other of PIXELTYPE will have more than one component.

const ArrayOfExtensionsType& itk::MeshIOBase::GetSupportedReadExtensions

(

)

const

This method returns an array with the list of filename extensions supported for reading by this MeshIO class. This is intended to facilitate GUI and application level integration.

const ArrayOfExtensionsType& itk::MeshIOBase::GetSupportedWriteExtensions

(

)

const

This method returns an array with the list of filename extensions supported for writing by this MeshIO class. This is intended to facilitate GUI and application level integration.

virtual bool itk::MeshIOBase::GetUpdateCellData ( ) const

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

virtual bool itk::MeshIOBase::GetUpdateCells ( ) const

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

Reimplemented in itk::STLMeshIO.

virtual bool itk::MeshIOBase::GetUpdatePointData ( ) const

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

virtual bool itk::MeshIOBase::GetUpdatePoints ( ) const

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

Reimplemented in itk::STLMeshIO.

virtual bool itk::MeshIOBase::GetUseCompression ( ) const

virtual

Set/Get a boolean to use the compression or not.

void itk::MeshIOBase::operator= ( const Self &  )

private

virtual void itk::MeshIOBase::PrintSelf ( std::ostream &  os, Indent  indent  ) const

overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::LightProcessObject.

Reimplemented in itk::OFFMeshIO, itk::FreeSurferBinaryMeshIO, itk::OBJMeshIO, itk::FreeSurferAsciiMeshIO, itk::BYUMeshIO, itk::STLMeshIO, itk::GiftiMeshIO, and itk::VTKPolyDataMeshIO.

template<typename T >

void itk::MeshIOBase::ReadBufferAsAscii ( T *  buffer, std::ifstream &  inputFile, SizeValueType  numberOfComponents  )

inlineprotected

Read data from input file stream to buffer with ascii style

Definition at line 535 of file itkMeshIOBase.h.

template<typename T >

void itk::MeshIOBase::ReadBufferAsBinary ( T *  buffer, std::ifstream &  inputFile, SizeValueType  numberOfComponents  )

inlineprotected

Read data from input file to buffer with binary style

Definition at line 546 of file itkMeshIOBase.h.

References itk::ByteSwapper< T >::SwapRangeFromSystemToBigEndian(), and itk::ByteSwapper< T >::SwapRangeFromSystemToLittleEndian().

virtual void itk::MeshIOBase::ReadCellData ( void *  buffer )

pure virtual

Implemented in itk::GiftiMeshIO, itk::STLMeshIO, itk::VTKPolyDataMeshIO, itk::FreeSurferBinaryMeshIO, itk::BYUMeshIO, itk::FreeSurferAsciiMeshIO, itk::OFFMeshIO, and itk::OBJMeshIO.

virtual void itk::MeshIOBase::ReadCells ( void *  buffer )

pure virtual

Implemented in itk::GiftiMeshIO, itk::VTKPolyDataMeshIO, itk::STLMeshIO, itk::FreeSurferBinaryMeshIO, itk::BYUMeshIO, itk::FreeSurferAsciiMeshIO, itk::OFFMeshIO, and itk::OBJMeshIO.

template<typename TInput , typename TOutput >

void itk::MeshIOBase::ReadCellsBuffer ( TInput *  input, TOutput *  output  )

inlineprotected

Read cells from a data buffer, used when writting cells. This function write all kind of cells as it is stored in cells container. It is used when cells container have only one kind of cells

Definition at line 626 of file itkMeshIOBase.h.

References itk::NumericTraits< T >::ZeroValue().

template<typename TInput , typename TOutput >

void itk::MeshIOBase::ReadCellsBuffer ( TInput *  input, TOutput *  output, MeshIOBase::CellGeometryType  type  )

inlineprotected

Read cells from input buffer, used when Writting cells. This function only write specified type of cells(used when input cells container composes multiple type of cells and only want to write a specified cell type

Definition at line 649 of file itkMeshIOBase.h.

References itk::NumericTraits< T >::ZeroValue().

virtual void itk::MeshIOBase::ReadMeshInformation ( )

pure virtual

Determin the required information and whether need to ReadPoints, ReadCells, ReadPointData and ReadCellData

Implemented in itk::GiftiMeshIO, itk::VTKPolyDataMeshIO, itk::FreeSurferBinaryMeshIO, itk::STLMeshIO, itk::BYUMeshIO, itk::FreeSurferAsciiMeshIO, itk::OFFMeshIO, and itk::OBJMeshIO.

virtual void itk::MeshIOBase::ReadPointData ( void *  buffer )

pure virtual

Implemented in itk::GiftiMeshIO, itk::STLMeshIO, itk::VTKPolyDataMeshIO, itk::FreeSurferBinaryMeshIO, itk::BYUMeshIO, itk::FreeSurferAsciiMeshIO, itk::OFFMeshIO, and itk::OBJMeshIO.

virtual void itk::MeshIOBase::ReadPoints ( void *  buffer )

pure virtual

Reads the data from disk into the memory buffer provided.

Implemented in itk::GiftiMeshIO, itk::VTKPolyDataMeshIO, itk::FreeSurferBinaryMeshIO, itk::STLMeshIO, itk::BYUMeshIO, itk::FreeSurferAsciiMeshIO, itk::OFFMeshIO, and itk::OBJMeshIO.

virtual void itk::MeshIOBase::SetByteOrder ( const ByteOrder  _arg )

virtual

These methods indicate the byte ordering of the file you are trying to read in. These methods will then either swap or not swap the bytes depending on the byte ordering of the machine it is being run on. For example, reading in a BigEndian file on a BigEndian machine will result in no swapping. Trying to read the same file on a LittleEndian machine will result in swapping. Note: most UNIX machines are BigEndian while PC's and VAX's are LittleEndian. So if the file you are reading in was generated on a VAX or PC, SetByteOrderToLittleEndian() otherwise SetByteOrderToBigEndian(). Some MeshIOBase subclasses ignore these methods.

void itk::MeshIOBase::SetByteOrderToBigEndian ( )

inline

Definition at line 449 of file itkMeshIOBase.h.

void itk::MeshIOBase::SetByteOrderToLittleEndian ( )

inline

Definition at line 454 of file itkMeshIOBase.h.

virtual void itk::MeshIOBase::SetCellBufferSize ( SizeValueType  _arg )

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

virtual void itk::MeshIOBase::SetCellComponentType ( const IOComponentType  _arg )

virtual

Set/Get the component type of the point, cell, point data and cell data. This is always a native type.

virtual void itk::MeshIOBase::SetCellPixelComponentType ( const IOComponentType  _arg )

virtual

Set/Get the component type of the point, cell, point data and cell data. This is always a native type.

virtual void itk::MeshIOBase::SetCellPixelType ( const IOPixelType  _arg )

virtual

Set/Get the type of the point/cell pixel. The PixelTypes provides context to the IO mechanisms for data conversions. PixelTypes can be SCALAR, RGB, RGBA, VECTOR, COVARIANTVECTOR, POINT, INDEX. If the PIXELTYPE is SCALAR, then the NumberOfComponents should be 1. Any other of PIXELTYPE will have more than one component.

virtual void itk::MeshIOBase::SetFileName ( const char *  _arg )

virtual

Set/Get the name of the file to be read.

virtual void itk::MeshIOBase::SetFileType ( const FileType  _arg )

virtual

These methods control whether the file is written binary or ASCII. Many file formats (i.e., subclasses) ignore this flag.

void itk::MeshIOBase::SetFileTypeToASCII ( )

inline

Definition at line 424 of file itkMeshIOBase.h.

void itk::MeshIOBase::SetFileTypeToBinary ( )

inline

Definition at line 429 of file itkMeshIOBase.h.

virtual void itk::MeshIOBase::SetNumberOfCellPixelComponents ( unsigned int  _arg )

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

virtual void itk::MeshIOBase::SetNumberOfCellPixels ( SizeValueType  _arg )

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

virtual void itk::MeshIOBase::SetNumberOfCells ( SizeValueType  _arg )

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

virtual void itk::MeshIOBase::SetNumberOfPointPixelComponents ( unsigned int  _arg )

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

virtual void itk::MeshIOBase::SetNumberOfPointPixels ( SizeValueType  _arg )

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

virtual void itk::MeshIOBase::SetNumberOfPoints ( SizeValueType  _arg )

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

template<typename T >

void itk::MeshIOBase::SetPixelType ( const T &  , bool  UsePointPixel = true  )

inline

Definition at line 158 of file itkMeshIOBase.h.

template<typename T >

void itk::MeshIOBase::SetPixelType ( const RGBPixel< T > &  , bool  UsePointPixel = true  )

inline

Definition at line 175 of file itkMeshIOBase.h.

template<typename T >

void itk::MeshIOBase::SetPixelType ( const RGBAPixel< T > &  , bool  UsePointPixel = true  )

inline

Definition at line 192 of file itkMeshIOBase.h.

template<typename T , unsigned int VLength>

void itk::MeshIOBase::SetPixelType ( const Vector< T, VLength > &  , bool  UsePointPixel = true  )

inline

Definition at line 209 of file itkMeshIOBase.h.

template<typename T , unsigned int VLength>

void itk::MeshIOBase::SetPixelType ( const CovariantVector< T, VLength > &  , bool  UsePointPixel = true  )

inline

Definition at line 226 of file itkMeshIOBase.h.

template<typename T , unsigned int VLength>

void itk::MeshIOBase::SetPixelType ( const FixedArray< T, VLength > &  , bool  UsePointPixel = true  )

inline

Definition at line 243 of file itkMeshIOBase.h.

template<typename T , unsigned int VLength>

void itk::MeshIOBase::SetPixelType ( const SymmetricSecondRankTensor< T, VLength >  , bool  UsePointPixel = true  )

inline

Definition at line 260 of file itkMeshIOBase.h.

template<typename T >

void itk::MeshIOBase::SetPixelType ( const DiffusionTensor3D< T > &  , bool  UsePointPixel = true  )

inline

Definition at line 277 of file itkMeshIOBase.h.

template<typename T , unsigned int NR, unsigned int NC>

void itk::MeshIOBase::SetPixelType ( const Matrix< T, NR, NC > &  , bool  UsePointPixel = true  )

inline

Definition at line 294 of file itkMeshIOBase.h.

References itk::NR.

template<typename T >

void itk::MeshIOBase::SetPixelType ( const std::complex< T > &  , bool  UsePointPixel = true  )

inline

Definition at line 311 of file itkMeshIOBase.h.

template<typename T >

void itk::MeshIOBase::SetPixelType ( const Array< T > &  array, bool  UsePointPixel = true  )

inline

Definition at line 328 of file itkMeshIOBase.h.

References itk::Array< TValue >::Size().

template<typename T >

void itk::MeshIOBase::SetPixelType ( const VariableLengthVector< T > &  vector, bool  UsePointPixel = true  )

inline

Definition at line 345 of file itkMeshIOBase.h.

References itk::VariableLengthVector< TValue >::Size().

template<typename T >

void itk::MeshIOBase::SetPixelType ( const VariableSizeMatrix< T > &  matrix, bool  UsePointPixel = true  )

inline

Definition at line 362 of file itkMeshIOBase.h.

References itk::VariableSizeMatrix< T >::Cols(), and itk::VariableSizeMatrix< T >::Rows().

virtual void itk::MeshIOBase::SetPointComponentType ( const IOComponentType  _arg )

virtual

Set/Get the component type of the point, cell, point data and cell data. This is always a native type.

virtual void itk::MeshIOBase::SetPointDimension ( unsigned int  _arg )

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

virtual void itk::MeshIOBase::SetPointPixelComponentType ( const IOComponentType  _arg )

virtual

Set/Get the component type of the point, cell, point data and cell data. This is always a native type.

virtual void itk::MeshIOBase::SetPointPixelType ( const IOPixelType  _arg )

virtual

Set/Get the type of the point/cell pixel. The PixelTypes provides context to the IO mechanisms for data conversions. PixelTypes can be SCALAR, RGB, RGBA, VECTOR, COVARIANTVECTOR, POINT, INDEX. If the PIXELTYPE is SCALAR, then the NumberOfComponents should be 1. Any other of PIXELTYPE will have more than one component.

virtual void itk::MeshIOBase::SetUpdateCellData ( bool  _arg )

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

virtual void itk::MeshIOBase::SetUpdateCells ( bool  _arg )

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

virtual void itk::MeshIOBase::SetUpdatePointData ( bool  _arg )

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

virtual void itk::MeshIOBase::SetUpdatePoints ( bool  _arg )

virtual

Set/Get the number of components per pixel in the mesh. This may be set by the reading process. For SCALAR pixel types, NumberOfComponents will be 1. For other pixel types, NumberOfComponents will be greater than or equal to one.

virtual void itk::MeshIOBase::SetUseCompression ( bool  _arg )

virtual

Set/Get a boolean to use the compression or not.

virtual void itk::MeshIOBase::UseCompressionOff ( )

virtual

Set/Get a boolean to use the compression or not.

virtual void itk::MeshIOBase::UseCompressionOn ( )

virtual

Set/Get a boolean to use the compression or not.

virtual void itk::MeshIOBase::Write ( )

pure virtual

Implemented in itk::GiftiMeshIO, itk::VTKPolyDataMeshIO, itk::FreeSurferBinaryMeshIO, itk::STLMeshIO, itk::BYUMeshIO, itk::FreeSurferAsciiMeshIO, itk::OFFMeshIO, and itk::OBJMeshIO.

template<typename T >

void itk::MeshIOBase::WriteBufferAsAscii ( T *  buffer, std::ofstream &  outputFile, SizeValueType  numberOfLines, SizeValueType  numberOfComponents  )

inlineprotected

Write buffer to output file stream with ascii style

Definition at line 568 of file itkMeshIOBase.h.

template<typename TOutput , typename TInput >

void itk::MeshIOBase::WriteBufferAsBinary ( TInput *  buffer, std::ofstream &  outputFile, SizeValueType  numberOfComponents  )

inlineprotected

Write buffer to output file stream with binary style

Definition at line 584 of file itkMeshIOBase.h.

References itk::ByteSwapper< T >::SwapRangeFromSystemToBigEndian(), and itk::ByteSwapper< T >::SwapRangeFromSystemToLittleEndian().

virtual void itk::MeshIOBase::WriteCellData ( void *  buffer )

pure virtual

Implemented in itk::STLMeshIO, itk::GiftiMeshIO, itk::VTKPolyDataMeshIO, itk::FreeSurferBinaryMeshIO, itk::BYUMeshIO, itk::FreeSurferAsciiMeshIO, itk::OFFMeshIO, and itk::OBJMeshIO.

virtual void itk::MeshIOBase::WriteCells ( void *  buffer )

pure virtual

Implemented in itk::STLMeshIO, itk::GiftiMeshIO, itk::VTKPolyDataMeshIO, itk::FreeSurferBinaryMeshIO, itk::BYUMeshIO, itk::FreeSurferAsciiMeshIO, itk::OFFMeshIO, and itk::OBJMeshIO.

template<typename TInput , typename TOutput >

void itk::MeshIOBase::WriteCellsBuffer ( TInput *  input, TOutput *  output, CellGeometryType  cellType, unsigned int  numberOfPoints, SizeValueType  numberOfCells  )

inlineprotected

Write cells to a data buffer, used when readding mesh, used for cellType with constant number of points

Definition at line 680 of file itkMeshIOBase.h.

References itk::NumericTraits< T >::ZeroValue().

template<typename TInput , typename TOutput >

void itk::MeshIOBase::WriteCellsBuffer ( TInput *  input, TOutput *  output, CellGeometryType  cellType, SizeValueType  numberOfCells  )

inlineprotected

Write cells to a data buffer, used when readding mesh, used for cellType with non-constant number of points

Definition at line 702 of file itkMeshIOBase.h.

References itk::NumericTraits< T >::ZeroValue().

virtual void itk::MeshIOBase::WriteMeshInformation ( )

pure virtual

Implemented in itk::GiftiMeshIO, itk::STLMeshIO, itk::VTKPolyDataMeshIO, itk::FreeSurferBinaryMeshIO, itk::BYUMeshIO, itk::FreeSurferAsciiMeshIO, itk::OFFMeshIO, and itk::OBJMeshIO.

virtual void itk::MeshIOBase::WritePointData ( void *  buffer )

pure virtual

Implemented in itk::STLMeshIO, itk::GiftiMeshIO, itk::VTKPolyDataMeshIO, itk::FreeSurferBinaryMeshIO, itk::BYUMeshIO, itk::FreeSurferAsciiMeshIO, itk::OFFMeshIO, and itk::OBJMeshIO.

virtual void itk::MeshIOBase::WritePoints ( void *  buffer )

pure virtual

Implemented in itk::GiftiMeshIO, itk::STLMeshIO, itk::VTKPolyDataMeshIO, itk::FreeSurferBinaryMeshIO, itk::BYUMeshIO, itk::FreeSurferAsciiMeshIO, itk::OFFMeshIO, and itk::OBJMeshIO.

Member Data Documentation

ByteOrder itk::MeshIOBase::m_ByteOrder

protected

Big or Little Endian, and the type of the file. (May be ignored.)

Definition at line 724 of file itkMeshIOBase.h.

SizeValueType itk::MeshIOBase::m_CellBufferSize

protected

The buffer size of cells

Definition at line 758 of file itkMeshIOBase.h.

IOComponentType itk::MeshIOBase::m_CellComponentType

protected

Definition at line 735 of file itkMeshIOBase.h.

IOComponentType itk::MeshIOBase::m_CellPixelComponentType

protected

Definition at line 737 of file itkMeshIOBase.h.

IOPixelType itk::MeshIOBase::m_CellPixelType

protected

Definition at line 741 of file itkMeshIOBase.h.

std::string itk::MeshIOBase::m_FileName

protected

Filename to read

Definition at line 728 of file itkMeshIOBase.h.

FileType itk::MeshIOBase::m_FileType

protected

Definition at line 725 of file itkMeshIOBase.h.

unsigned int itk::MeshIOBase::m_NumberOfCellPixelComponents

protected

Definition at line 746 of file itkMeshIOBase.h.

SizeValueType itk::MeshIOBase::m_NumberOfCellPixels

protected

Definition at line 755 of file itkMeshIOBase.h.

SizeValueType itk::MeshIOBase::m_NumberOfCells

protected

Definition at line 753 of file itkMeshIOBase.h.

unsigned int itk::MeshIOBase::m_NumberOfPointPixelComponents

protected

Stores the number of components per pixel. This will be 1 for grayscale images, 3 for RGBPixel images, and 4 for RGBPixelA images.

Definition at line 745 of file itkMeshIOBase.h.

SizeValueType itk::MeshIOBase::m_NumberOfPointPixels

protected

Definition at line 754 of file itkMeshIOBase.h.

SizeValueType itk::MeshIOBase::m_NumberOfPoints

protected

The number of points and cells

Definition at line 752 of file itkMeshIOBase.h.

IOComponentType itk::MeshIOBase::m_PointComponentType

protected

Used internally to keep track of the type of the component.

Definition at line 734 of file itkMeshIOBase.h.

SizeValueType itk::MeshIOBase::m_PointDimension

protected

The number of independent dimensions in the point.

Definition at line 749 of file itkMeshIOBase.h.

IOComponentType itk::MeshIOBase::m_PointPixelComponentType

protected

Definition at line 736 of file itkMeshIOBase.h.

IOPixelType itk::MeshIOBase::m_PointPixelType

protected

Used internally to keep track of the type of the pixel.

Definition at line 740 of file itkMeshIOBase.h.

ArrayOfExtensionsType itk::MeshIOBase::m_SupportedReadExtensions

private

Definition at line 771 of file itkMeshIOBase.h.

ArrayOfExtensionsType itk::MeshIOBase::m_SupportedWriteExtensions

private

Definition at line 772 of file itkMeshIOBase.h.

bool itk::MeshIOBase::m_UpdateCellData

protected

Definition at line 765 of file itkMeshIOBase.h.

bool itk::MeshIOBase::m_UpdateCells

protected

Definition at line 763 of file itkMeshIOBase.h.

bool itk::MeshIOBase::m_UpdatePointData

protected

Definition at line 764 of file itkMeshIOBase.h.

bool itk::MeshIOBase::m_UpdatePoints

protected

Flags indicate whether read or write points, cells, point data and cell data

Definition at line 762 of file itkMeshIOBase.h.

bool itk::MeshIOBase::m_UseCompression

protected

Should we compress the data?

Definition at line 731 of file itkMeshIOBase.h.

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The documentation for this class was generated from the following file:

• itkMeshIOBase.h