#include <itkPCAShapeSignedDistanceFunction.h>

Inheritance diagram for itk::PCAShapeSignedDistanceFunction< TCoordRep, VSpaceDimension, TImage >:

Collaboration diagram for itk::PCAShapeSignedDistanceFunction< TCoordRep, VSpaceDimension, TImage >:

Detailed Description

template<typename TCoordRep, unsigned int VSpaceDimension, typename TImage = Image< double, VSpaceDimension >>
class itk::PCAShapeSignedDistanceFunction< TCoordRep, VSpaceDimension, TImage >

Compute the signed distance from a N-dimensional PCA Shape.

This class computes the signed distance from a N-dimensional shape defined by: (1) a mean signed distance image $ M(x) $ , (2) the first $ q $ principal components images $ P_i(x) $ and (3) a transform $ T(x) $ to define the pose (i.e. position or orientation of the shape).

A particular instance of the shape is defined by a set of parameters $ p $ . The first $ q $ parameters defines the weights applied to each principal components and the remaining parameters is used to define the transform. The user should refer to the documentation of the particular Transform class being used. The first set of parameters are called the ShapeParameters and the remaining parameters the PoseParameters.

The method Evaluate( point x ) returns the approximate signed to the shape at point x such that:

$s = M(T(x)) + \sum_i^{q} p[i] * \sigma[i] * P_i(T(x))$

Where $\sigma[i]$ are the square root of the eigenvalues. These are defined using method SetPrincipalComponentStandardDeviations().

This class is templated over the coordinate representation type (e.g. float or double) and the space dimension.

See Also: ShapeSignedDistanceFunction; Transform

Examples:: Examples/Segmentation/GeodesicActiveContourShapePriorLevelSetImageFilter.cxx.

Definition at line 68 of file itkPCAShapeSignedDistanceFunction.h.

Public Types
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::CoordRepType	CoordRepType

typedef ExtrapolatorType::Pointer	ExtrapolatorPointer

typedef std::vector < ExtrapolatorPointer >	ExtrapolatorPointerVector

typedef ExtrapolateImageFunction < ImageType, CoordRepType >	ExtrapolatorType

typedef FunctionType::Pointer	FunctionPointer

typedef std::vector < FunctionPointer >	FunctionPointerVector

typedef ImageFunction < ImageType, double, CoordRepType >	FunctionType

typedef ImageType::Pointer	ImagePointer

typedef std::vector< ImagePointer >	ImagePointerVector

typedef TImage	ImageType

typedef Superclass::InputType	InputType

typedef InterpolatorType::Pointer	InterpolatorPointer

typedef std::vector < InterpolatorPointer >	InterpolatorPointerVector

typedef InterpolateImageFunction < ImageType, CoordRepType >	InterpolatorType

typedef Superclass::OutputType	OutputType

typedef Superclass::ParametersType	ParametersType

typedef SmartPointer< Self >	Pointer

typedef Superclass::PointType	PointType

typedef PCAShapeSignedDistanceFunction	Self

typedef ShapeSignedDistanceFunction < TCoordRep, VSpaceDimension >	Superclass

typedef Transform < CoordRepType, itkGetStaticConstMacro(SpaceDimension), itkGetStaticConstMacro(SpaceDimension) >	TransformType

Public Types inherited from itk::ShapeSignedDistanceFunction< TCoordRep, VSpaceDimension >
typedef SmartPointer< const Self >	ConstPointer

typedef TCoordRep	CoordRepType

typedef Superclass::InputType	InputType

typedef Superclass::OutputType	OutputType

typedef OptimizerParameters < double >	ParametersType

typedef SmartPointer< Self >	Pointer

typedef InputType	PointType

typedef ShapeSignedDistanceFunction	Self

typedef SpatialFunction < double, VSpaceDimension, Point< TCoordRep, VSpaceDimension > >	Superclass

Public Types inherited from itk::SpatialFunction< double, VSpaceDimension, Point< TCoordRep, VSpaceDimension > >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::InputType	InputType

typedef Superclass::OutputType	OutputType

typedef SmartPointer< Self >	Pointer

typedef SpatialFunction	Self

typedef FunctionBase< Point < TCoordRep, VSpaceDimension > , double >	Superclass

Public Types inherited from itk::FunctionBase< Point< TCoordRep, VSpaceDimension >, double >
typedef SmartPointer< const Self >	ConstPointer

typedef Point< TCoordRep, VSpaceDimension >	InputType

typedef double	OutputType

typedef SmartPointer< Self >	Pointer

typedef FunctionBase	Self

typedef Object	Superclass

Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef Object	Self

typedef LightObject	Superclass

Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightObject	Self

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother () const

virtual OutputType	Evaluate (const PointType &point) const override

virtual const char *	GetNameOfClass () const

virtual unsigned int	GetNumberOfPoseParameters (void) const override

virtual unsigned int	GetNumberOfPrincipalComponents () const

virtual unsigned int	GetNumberOfShapeParameters (void) const override

virtual void	Initialize () override throw ( ExceptionObject )

void	SetNumberOfPrincipalComponents (unsigned int n)

virtual void	SetParameters (const ParametersType &) override


virtual void	SetMeanImage (ImageType *_arg)

virtual ImageType *	GetModifiableMeanImage ()

virtual const ImageType *	GetMeanImage () const


void	SetPrincipalComponentImages (ImagePointerVector v)


virtual void	SetPrincipalComponentStandardDeviations (ParametersType _arg)

virtual ParametersType	GetPrincipalComponentStandardDeviations () const


virtual void	SetTransform (TransformType *_arg)

virtual TransformType *	GetModifiableTransform ()

virtual const TransformType *	GetTransform () const

Public Member Functions inherited from itk::ShapeSignedDistanceFunction< TCoordRep, VSpaceDimension >
virtual OutputType	Evaluate (const PointType &point) const override=0

virtual unsigned int	GetNumberOfParameters (void) const

virtual ParametersType &	GetParameters (void)

Public Member Functions inherited from itk::SpatialFunction< double, VSpaceDimension, Point< TCoordRep, VSpaceDimension > >
virtual OutputType	Evaluate (const InputType &input) const override=0

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)

unsigned long	AddObserver (const EventObject &event, Command *) const

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary ()

const MetaDataDictionary &	GetMetaDataDictionary () const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

virtual void	Register () const override

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag)

void	SetDebug (bool debugFlag) const

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

virtual void	SetReferenceCount (int) override

virtual void	UnRegister () const noexceptoverride

virtual void	SetObjectName (std::string _arg)

virtual const std::string &	GetObjectName () const

Public Member Functions inherited from itk::LightObject
virtual void	Delete ()

virtual int	GetReferenceCount () const

	itkCloneMacro (Self)

void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool flag)

Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Static Public Attributes
static const unsigned int	SpaceDimension = Superclass::SpaceDimension

Static Public Attributes inherited from itk::ShapeSignedDistanceFunction< TCoordRep, VSpaceDimension >
static const unsigned int	SpaceDimension = VSpaceDimension

Static Public Attributes inherited from itk::SpatialFunction< double, VSpaceDimension, Point< TCoordRep, VSpaceDimension > >
static const unsigned int	ImageDimension

Protected Member Functions
	PCAShapeSignedDistanceFunction ()

void	PrintSelf (std::ostream &os, Indent indent) const override

	~PCAShapeSignedDistanceFunction ()

Protected Member Functions inherited from itk::ShapeSignedDistanceFunction< TCoordRep, VSpaceDimension >
void	PrintSelf (std::ostream &os, Indent indent) const override

	ShapeSignedDistanceFunction ()

	~ShapeSignedDistanceFunction ()

Protected Member Functions inherited from itk::SpatialFunction< double, VSpaceDimension, Point< TCoordRep, VSpaceDimension > >
void	PrintSelf (std::ostream &os, Indent indent) const override

	SpatialFunction ()

virtual	~SpatialFunction ()

Protected Member Functions inherited from itk::FunctionBase< Point< TCoordRep, VSpaceDimension >, double >
	FunctionBase ()

	~FunctionBase ()

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &time)

virtual	~Object ()

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Private Member Functions
void	operator= (const Self &)

	PCAShapeSignedDistanceFunction (const Self &)

Private Attributes
ExtrapolatorPointerVector	m_Extrapolators

InterpolatorPointerVector	m_Interpolators

ImagePointer	m_MeanImage

unsigned int	m_NumberOfPrincipalComponents

unsigned int	m_NumberOfTransformParameters

ImagePointerVector	m_PrincipalComponentImages

ParametersType	m_PrincipalComponentStandardDeviations

TransformType::Pointer	m_Transform

ParametersType	m_TransformParameters

ParametersType	m_WeightOfPrincipalComponents

Additional Inherited Members
Protected Attributes inherited from itk::ShapeSignedDistanceFunction< TCoordRep, VSpaceDimension >
ParametersType	m_Parameters

Protected Attributes inherited from itk::LightObject
AtomicInt< int >	m_ReferenceCount