ITK  4.8.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Protected Member Functions | Private Member Functions | Private Attributes | List of all members
itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType > Class Template Reference

#include <itkStripTsImageFilter.h>

+ Inheritance diagram for itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >:
+ Collaboration diagram for itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >:

Detailed Description

template<class TImageType, class TAtlasImageType, class TAtlasLabelType>
class itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >

composite ITK filter for automatic skull-stripping

This ITK filter performs automatic skull stripping for 3D medical images

It requires 3 inputs: SetInput() SetAtlasImage() SetAtlasBrainMask() and it outputs the brain mask for the patient image

Warning
images have to be 3D

to be done: check if all required inputs are set and if images are 3D

version: 1.0 date: 20.04.2012 initial release

Stefan Bauer Institute for Surgical Technology and Biomechanics, University of Bern stefan.bauer at istb.unibe.ch

This code is from the Insight Journal paper: "A Skull-Stripping Filter for ITK" Bauer S., Fejes T., Reyes M. http://hdl.handle.net/10380/3353 Based on the paper: "Skull-stripping for Tumor-bearing Brain Images". Stefan Bauer, Lutz-Peter Nolte, and Mauricio Reyes. In Annual Meeting of the Swiss Society for Biomedical Engineering, page 2, Bern, April 2011..

Definition at line 94 of file itkStripTsImageFilter.h.

Public Types

typedef
AtlasImageType::ConstPointer 
AtlasImageConstPointer
 
typedef AtlasImageType::Pointer AtlasImagePointer
 
typedef TAtlasImageType AtlasImageType
 
typedef
AtlasLabelType::ConstPointer 
AtlasLabelConstPointer
 
typedef AtlasLabelType::Pointer AtlasLabelPointer
 
typedef TAtlasLabelType AtlasLabelType
 
typedef SmartPointer< const SelfConstPointer
 
typedef ImageType::ConstPointer ImageConstPointer
 
typedef ImageType::Pointer ImagePointer
 
typedef TImageType ImageType
 
typedef SmartPointer< SelfPointer
 
typedef
ProgressAccumulator::Pointer 
ProgressPointer
 
typedef StripTsImageFilter Self
 
typedef ImageToImageFilter
< TImageType, TAtlasLabelType > 
Superclass
 
- Public Types inherited from itk::ImageToImageFilter< TImageType, TAtlasLabelType >
typedef SmartPointer< const SelfConstPointer
 
typedef
InputImageType::ConstPointer 
InputImageConstPointer
 
typedef InputImageType::PixelType InputImagePixelType
 
typedef InputImageType::Pointer InputImagePointer
 
typedef InputImageType::RegionType InputImageRegionType
 
typedef TImageType InputImageType
 
typedef
Superclass::OutputImagePixelType 
OutputImagePixelType
 
typedef
Superclass::OutputImageRegionType 
OutputImageRegionType
 
typedef SmartPointer< SelfPointer
 
typedef ImageToImageFilter Self
 
typedef ImageSource
< TAtlasLabelType > 
Superclass
 
- Public Types inherited from itk::ImageSource< TAtlasLabelType >
typedef SmartPointer< const SelfConstPointer
 
typedef
Superclass::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef
Superclass::DataObjectPointerArraySizeType 
DataObjectPointerArraySizeType
 
typedef OutputImageType::PixelType OutputImagePixelType
 
typedef OutputImageType::Pointer OutputImagePointer
 
typedef OutputImageType::RegionType OutputImageRegionType
 
typedef TAtlasLabelType OutputImageType
 
typedef SmartPointer< SelfPointer
 
typedef ImageSource Self
 
typedef ProcessObject Superclass
 
- Public Types inherited from itk::ProcessObject
typedef SmartPointer< const SelfConstPointer
 
typedef
DataObject::DataObjectIdentifierType 
DataObjectIdentifierType
 
typedef DataObject::Pointer DataObjectPointer
 
typedef std::vector
< DataObjectPointer
DataObjectPointerArray
 
typedef
DataObjectPointerArray::size_type 
DataObjectPointerArraySizeType
 
typedef std::vector
< DataObjectIdentifierType
NameArray
 
typedef SmartPointer< SelfPointer
 
typedef ProcessObject Self
 
typedef Object Superclass
 
- Public Types inherited from itk::Object
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef Object Self
 
typedef LightObject Superclass
 
- Public Types inherited from itk::LightObject
typedef SmartPointer< const SelfConstPointer
 
typedef SmartPointer< SelfPointer
 
typedef LightObject Self
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother () const
 
virtual const char * GetNameOfClass () const
 
const std::string & GetTimerReport () const
 
void PrintSelf (std::ostream &os, Indent indent) const
 
void SetAtlasBrainMask (const TAtlasLabelType *ptr)
 
void SetAtlasImage (const TAtlasImageType *ptr)
 
- Public Member Functions inherited from itk::ImageToImageFilter< TImageType, TAtlasLabelType >
const InputImageTypeGetInput () const
 
const InputImageTypeGetInput (unsigned int idx) const
 
virtual void PopBackInput () override
 
virtual void PopFrontInput () override
 
virtual void PushBackInput (const InputImageType *image)
 
virtual void PushFrontInput (const InputImageType *image)
 
virtual void SetInput (const InputImageType *image)
 
virtual void SetInput (unsigned int, const TImageType *image)
 
virtual void SetCoordinateTolerance (double _arg)
 
virtual double GetCoordinateTolerance () const
 
virtual void SetDirectionTolerance (double _arg)
 
virtual double GetDirectionTolerance () const
 
- Public Member Functions inherited from itk::ImageSource< TAtlasLabelType >
OutputImageTypeGetOutput (unsigned int idx)
 
virtual void GraftNthOutput (unsigned int idx, DataObject *output)
 
virtual void GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
 
OutputImageTypeGetOutput ()
 
const OutputImageTypeGetOutput () const
 
virtual void GraftOutput (DataObject *output)
 
virtual
ProcessObject::DataObjectPointer 
MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override
 
virtual
ProcessObject::DataObjectPointer 
MakeOutput (const ProcessObject::DataObjectIdentifierType &) override
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual void EnlargeOutputRequestedRegion (DataObject *)
 
virtual const bool & GetAbortGenerateData () const
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
NameArray GetInputNames () const
 
DataObjectPointerArray GetInputs ()
 
MultiThreader * GetMultiThreader () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual
DataObjectPointerArraySizeType 
GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
DataObjectPointerArray GetOutputs ()
 
virtual const float & GetProgress () const
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
virtual void PrepareOutputs ()
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
virtual void SetAbortGenerateData (bool _arg)
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float progress)
 
void SetProgress (float progress)
 
virtual void SetReleaseDataFlag (bool flag)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag () const
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void ReleaseDataBeforeUpdateFlagOff ()
 
virtual void SetNumberOfThreads (ThreadIdType _arg)
 
virtual const ThreadIdTypeGetNumberOfThreads () const
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary ()
 
const MetaDataDictionaryGetMetaDataDictionary () const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
virtual void Register () const override
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
virtual void SetReferenceCount (int) override
 
virtual void UnRegister () const noexceptoverride
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 

Protected Member Functions

virtual void GenerateData ()
 
 StripTsImageFilter ()
 
 ~StripTsImageFilter ()
 
- Protected Member Functions inherited from itk::ImageToImageFilter< TImageType, TAtlasLabelType >
virtual void CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
 
virtual void CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
 
virtual void GenerateInputRequestedRegion () override
 
 ImageToImageFilter ()
 
virtual void VerifyInputInformation () override
 
 ~ImageToImageFilter ()
 
void PushBackInput (const DataObject *input) override
 
void PushFrontInput (const DataObject *input) override
 
- Protected Member Functions inherited from itk::ImageSource< TAtlasLabelType >
virtual void AfterThreadedGenerateData ()
 
virtual void AllocateOutputs ()
 
virtual void BeforeThreadedGenerateData ()
 
virtual const
ImageRegionSplitterBase
GetImageRegionSplitter () const
 
 ImageSource ()
 
virtual unsigned int SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)
 
virtual void ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
 
virtual ~ImageSource ()
 
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
 
virtual void AddOutput (DataObject *output)
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void GenerateOutputInformation ()
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
DataObjectGetInput (const DataObjectIdentifierType &key)
 
const DataObjectGetInput (const DataObjectIdentifierType &key) const
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredInputs () const
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredOutputs () const
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
 itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
 
 itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
 
 itkLegacyMacro (virtual void RemoveInput(DataObject *input))
 
 itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
 ProcessObject ()
 
virtual void PropagateResetPipeline ()
 
virtual void ReleaseInputs ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void SetPrimaryInput (DataObject *input)
 
virtual void SetPrimaryOutput (DataObject *output)
 
void SetRequiredInputNames (const NameArray &)
 
virtual void VerifyPreconditions ()
 
 ~ProcessObject ()
 
DataObjectGetInput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryInput ()
 
const DataObjectGetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName (void) const
 
DataObjectGetOutput (const DataObjectIdentifierType &key)
 
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName (void) const
 
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryOutput ()
 
const DataObjectGetPrimaryOutput () const
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
virtual ~Object ()
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Private Member Functions

void AffineRegistration ()
 
void BinaryErosion ()
 
void DownsampleImage ()
 
void InversePyramidFilter ()
 
void LevelSetRefinement (int isoSpacing)
 
void MultiResLevelSet ()
 
void operator= (const Self &)
 
void PyramidFilter (int isoSpacing)
 
void RescaleImages ()
 
void RigidRegistration ()
 
 StripTsImageFilter (const Self &)
 
void UpsampleLabels ()
 

Private Attributes

AtlasImagePointer m_AtlasImage
 
AtlasLabelPointer m_AtlasLabels
 
ImagePointer m_PatientImage
 
ProgressPointer m_Progress
 
TimeProbesCollectorBase m_Timer
 
std::string m_TimerReport
 

Additional Inherited Members

- Static Public Attributes inherited from itk::ImageToImageFilter< TImageType, TAtlasLabelType >
static const unsigned int InputImageDimension
 
static const unsigned int OutputImageDimension
 
- Static Public Attributes inherited from itk::ImageSource< TAtlasLabelType >
static const unsigned int OutputImageDimension
 
- Protected Types inherited from itk::ImageToImageFilter< TImageType, TAtlasLabelType >
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(OutputImageDimension),
itkGetStaticConstMacro(InputImageDimension) > 
InputToOutputRegionCopierType
 
typedef
ImageToImageFilterDetail::ImageRegionCopier
< itkGetStaticConstMacro(InputImageDimension),
itkGetStaticConstMacro(OutputImageDimension) > 
OutputToInputRegionCopierType
 
- Static Protected Member Functions inherited from itk::ImageSource< TAtlasLabelType >
static const
ImageRegionSplitterBase
GetGlobalDefaultSplitter ()
 
static ITK_THREAD_RETURN_TYPE ThreaderCallback (void *arg)
 
- Protected Attributes inherited from itk::ProcessObject
TimeStamp m_OutputInformationMTime
 
bool m_Updating
 
- Protected Attributes inherited from itk::LightObject
AtomicInt< int > m_ReferenceCount
 

Member Typedef Documentation

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
typedef AtlasImageType::ConstPointer itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::AtlasImageConstPointer

Definition at line 121 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
typedef AtlasImageType::Pointer itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::AtlasImagePointer

Definition at line 120 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
typedef TAtlasImageType itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::AtlasImageType

Definition at line 119 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
typedef AtlasLabelType::ConstPointer itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::AtlasLabelConstPointer

Definition at line 125 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
typedef AtlasLabelType::Pointer itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::AtlasLabelPointer

Definition at line 124 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
typedef TAtlasLabelType itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::AtlasLabelType

Definition at line 123 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
typedef SmartPointer<const Self> itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::ConstPointer

Definition at line 103 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
typedef ImageType::ConstPointer itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::ImageConstPointer

Definition at line 117 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
typedef ImageType::Pointer itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::ImagePointer

Definition at line 116 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
typedef TImageType itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::ImageType

Definition at line 115 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
typedef SmartPointer<Self> itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::Pointer

Definition at line 102 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
typedef ProgressAccumulator::Pointer itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::ProgressPointer

Definition at line 127 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
typedef StripTsImageFilter itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::Self

Definition at line 100 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
typedef ImageToImageFilter<TImageType,TAtlasLabelType> itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::Superclass

Definition at line 101 of file itkStripTsImageFilter.h.

Constructor & Destructor Documentation

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::StripTsImageFilter ( )
protected
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::~StripTsImageFilter ( )
protected
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::StripTsImageFilter ( const Self )
private

Member Function Documentation

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::AffineRegistration ( )
private
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::BinaryErosion ( )
private
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
virtual::itk::LightObject::Pointer itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::CreateAnother ( ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::DownsampleImage ( )
private
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
virtual void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::GenerateData ( void  )
protectedvirtual

A version of GenerateData() specific for image processing filters. This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling ThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter an be threaded, it should NOT provide a GenerateData() method but should provide a ThreadedGenerateData() instead.

See Also
ThreadedGenerateData()

Reimplemented from itk::ImageSource< TAtlasLabelType >.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
virtual const char* itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::ImageToImageFilter< TImageType, TAtlasLabelType >.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
const std::string& itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::GetTimerReport ( ) const
inline

Definition at line 132 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::InversePyramidFilter ( )
private
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::LevelSetRefinement ( int  isoSpacing)
private
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::MultiResLevelSet ( )
private
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
static Pointer itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::New ( )
static
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::operator= ( const Self )
private
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
virtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageToImageFilter< TImageType, TAtlasLabelType >.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::PyramidFilter ( int  isoSpacing)
private
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::RescaleImages ( )
private
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::RigidRegistration ( )
private
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::SetAtlasBrainMask ( const TAtlasLabelType *  ptr)
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::SetAtlasImage ( const TAtlasImageType *  ptr)
template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
void itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::UpsampleLabels ( )
private

Member Data Documentation

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
AtlasImagePointer itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::m_AtlasImage
private

Definition at line 152 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
AtlasLabelPointer itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::m_AtlasLabels
private

Definition at line 153 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
ImagePointer itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::m_PatientImage
private

Definition at line 151 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
ProgressPointer itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::m_Progress
private

Definition at line 154 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
TimeProbesCollectorBase itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::m_Timer
private

Definition at line 155 of file itkStripTsImageFilter.h.

template<class TImageType , class TAtlasImageType , class TAtlasLabelType >
std::string itk::StripTsImageFilter< TImageType, TAtlasImageType, TAtlasLabelType >::m_TimerReport
private

Definition at line 156 of file itkStripTsImageFilter.h.


The documentation for this class was generated from the following file: