ITK  4.8.0
Insight Segmentation and Registration Toolkit
itkBioGeneNetwork.h
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18 #ifndef itkBioGeneNetwork_h
19 #define itkBioGeneNetwork_h
20 
21 
22 #include "itkMacro.h"
23 #include "ITKBioCellExport.h"
24 
25 #include <vector>
26 
27 namespace itk
28 {
29 namespace bio
30 {
39 class ITKBioCell_EXPORT GeneNetwork
40 {
41 public:
42  typedef std::vector< float > ProteomeType;
43  typedef std::vector< float > DomainsType;
44 
45 public:
46  GeneNetwork();
47  virtual ~GeneNetwork();
48 
49  void Copy(const GeneNetwork & genome);
50 
51 private:
52 
53  // This array contains the concentrations of each protein
54  // in the cell at a certain time.
56 
57  // This array contains the concentrations of domain affinities
58  // in the cell at a certain time. Since each protein may
59  // have multiple domains and each domain has affinities
60  // for standard domains in the regulatory section of genes,
61  // this array is indexed by the domains in the regulatory
62  // section. The final value on each entry indicates the
63  // probability of a domain to be bound during a certain time
64  // interval.
66 };
67 } // end namespace bio
68 } // end namespace itk
69 
70 #endif
std::vector< float > DomainsType
ProteomeType m_ProteinConcentration
This class implements the abstraction of a biological gene network.
DomainsType m_DomainConcentration
std::vector< float > ProteomeType