itkESMDemonsRegistrationFunction.h

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/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkESMDemonsRegistrationFunction_h
#define itkESMDemonsRegistrationFunction_h

#include "itkPDEDeformableRegistrationFunction.h"
#include "itkCentralDifferenceImageFunction.h"
#include "itkWarpImageFilter.h"

namespace itk
{
template< typename TFixedImage, typename TMovingImage, typename TDisplacementField >
class ESMDemonsRegistrationFunction:
  public PDEDeformableRegistrationFunction< TFixedImage,
                                            TMovingImage, TDisplacementField >
{
public:

  typedef ESMDemonsRegistrationFunction Self;
  typedef PDEDeformableRegistrationFunction<
    TFixedImage, TMovingImage, TDisplacementField >    Superclass;

  typedef SmartPointer< Self >       Pointer;
  typedef SmartPointer< const Self > ConstPointer;

  itkNewMacro(Self);

  itkTypeMacro(ESMDemonsRegistrationFunction,
               PDEDeformableRegistrationFunction);

  typedef typename Superclass::MovingImageType    MovingImageType;
  typedef typename Superclass::MovingImagePointer MovingImagePointer;
  typedef typename MovingImageType::PixelType     MovingPixelType;

  typedef typename Superclass::FixedImageType    FixedImageType;
  typedef typename Superclass::FixedImagePointer FixedImagePointer;
  typedef typename FixedImageType::IndexType     IndexType;
  typedef typename FixedImageType::SizeType      SizeType;
  typedef typename FixedImageType::SpacingType   SpacingType;
  typedef typename FixedImageType::DirectionType DirectionType;

  typedef typename Superclass::DisplacementFieldType DisplacementFieldType;
  typedef typename Superclass::DisplacementFieldTypePointer
  DisplacementFieldTypePointer;

  itkStaticConstMacro(ImageDimension, unsigned int, Superclass::ImageDimension);

  typedef typename Superclass::PixelType        PixelType;
  typedef typename Superclass::RadiusType       RadiusType;
  typedef typename Superclass::NeighborhoodType NeighborhoodType;
  typedef typename Superclass::FloatOffsetType  FloatOffsetType;
  typedef typename Superclass::TimeStepType     TimeStepType;

  typedef double CoordRepType;
  typedef InterpolateImageFunction<
    MovingImageType, CoordRepType >                   InterpolatorType;
  typedef typename InterpolatorType::Pointer   InterpolatorPointer;
  typedef typename InterpolatorType::PointType PointType;
  typedef LinearInterpolateImageFunction<
    MovingImageType, CoordRepType >                   DefaultInterpolatorType;

  typedef WarpImageFilter<
    MovingImageType,
    MovingImageType, DisplacementFieldType >           WarperType;

  typedef typename WarperType::Pointer WarperPointer;

  typedef CovariantVector< double, itkGetStaticConstMacro(ImageDimension) > CovariantVectorType;

  typedef CentralDifferenceImageFunction< FixedImageType > GradientCalculatorType;
  typedef typename GradientCalculatorType::Pointer         GradientCalculatorPointer;

  typedef CentralDifferenceImageFunction< MovingImageType, CoordRepType >
  MovingImageGradientCalculatorType;
  typedef typename MovingImageGradientCalculatorType::Pointer
  MovingImageGradientCalculatorPointer;

  void SetMovingImageInterpolator(InterpolatorType *ptr)
  { m_MovingImageInterpolator = ptr; m_MovingImageWarper->SetInterpolator(ptr); }

  InterpolatorType * GetMovingImageInterpolator(void)
  { return m_MovingImageInterpolator; }

  virtual TimeStepType ComputeGlobalTimeStep( void *itkNotUsed(GlobalData) ) const ITK_OVERRIDE
  { return m_TimeStep; }

  virtual void * GetGlobalDataPointer() const ITK_OVERRIDE
  {
    GlobalDataStruct *global = new GlobalDataStruct();

    global->m_SumOfSquaredDifference  = 0.0;
    global->m_NumberOfPixelsProcessed = 0L;
    global->m_SumOfSquaredChange      = 0;
    return global;
  }

  virtual void ReleaseGlobalDataPointer(void *GlobalData) const ITK_OVERRIDE;

  virtual void InitializeIteration() ITK_OVERRIDE;

  virtual PixelType  ComputeUpdate( const NeighborhoodType & neighborhood,
                                    void *globalData,
                                    const FloatOffsetType & offset = FloatOffsetType(0.0) ) ITK_OVERRIDE;

  virtual double GetMetric() const
  { return m_Metric; }

  virtual const double & GetRMSChange() const
  { return m_RMSChange; }

  virtual void SetIntensityDifferenceThreshold(double);

  virtual double GetIntensityDifferenceThreshold() const;

  virtual void SetMaximumUpdateStepLength(double sm)
  {
    this->m_MaximumUpdateStepLength = sm;
  }

  virtual double GetMaximumUpdateStepLength() const
  {
    return this->m_MaximumUpdateStepLength;
  }

  enum GradientType {
    Symmetric = 0,
    Fixed = 1,
    WarpedMoving = 2,
    MappedMoving = 3
    };

  virtual void SetUseGradientType(GradientType gtype)
  { m_UseGradientType = gtype; }
  virtual GradientType GetUseGradientType() const
  { return m_UseGradientType; }

protected:
  ESMDemonsRegistrationFunction();
  ~ESMDemonsRegistrationFunction() {}
  void PrintSelf(std::ostream & os, Indent indent) const ITK_OVERRIDE;

  typedef ConstNeighborhoodIterator< FixedImageType > FixedImageNeighborhoodIteratorType;

  struct GlobalDataStruct {
    double m_SumOfSquaredDifference;
    SizeValueType m_NumberOfPixelsProcessed;
    double m_SumOfSquaredChange;
  };

private:
  ESMDemonsRegistrationFunction(const Self &); //purposely not implemented
  void operator=(const Self &);                //purposely not implemented

  PointType     m_FixedImageOrigin;
  SpacingType   m_FixedImageSpacing;
  DirectionType m_FixedImageDirection;
  double        m_Normalizer;

  GradientCalculatorPointer m_FixedImageGradientCalculator;

  MovingImageGradientCalculatorPointer m_MappedMovingImageGradientCalculator;

  GradientType m_UseGradientType;

  InterpolatorPointer m_MovingImageInterpolator;

  WarperPointer m_MovingImageWarper;

  MovingImageType *m_MovingImageWarperOutput;

  TimeStepType m_TimeStep;

  double m_DenominatorThreshold;

  double m_IntensityDifferenceThreshold;

  double m_MaximumUpdateStepLength;

  mutable double        m_Metric;
  mutable double        m_SumOfSquaredDifference;
  mutable SizeValueType m_NumberOfPixelsProcessed;
  mutable double        m_RMSChange;
  mutable double        m_SumOfSquaredChange;

  mutable SimpleFastMutexLock m_MetricCalculationLock;
};
} // end namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkESMDemonsRegistrationFunction.hxx"
#endif

#endif