#include <itkConstantVelocityFieldTransform.h>

Inheritance diagram for itk::ConstantVelocityFieldTransform< TParametersValueType, NDimensions >:

Collaboration diagram for itk::ConstantVelocityFieldTransform< TParametersValueType, NDimensions >:

Detailed Description

template<typename TParametersValueType, unsigned int NDimensions>
class itk::ConstantVelocityFieldTransform< TParametersValueType, NDimensions >

Provides local/dense/high-dimensionality transformation via a a constant velocity field.

Author: Nick Tustison; Brian Avants

Definition at line 37 of file itkConstantVelocityFieldTransform.h.

Public Types
typedef ConstantVelocityFieldInterpolatorType::Pointer	ConstantVelocityFieldInterpolatorPointer

typedef VectorInterpolateImageFunction < ConstantVelocityFieldType, ScalarType >	ConstantVelocityFieldInterpolatorType

typedef ConstantVelocityFieldType::Pointer	ConstantVelocityFieldPointer

typedef Image < OutputVectorType, ConstantVelocityFieldDimension >	ConstantVelocityFieldType

typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::DerivativeType	DerivativeType

typedef ConstantVelocityFieldType::DirectionType	DirectionType

typedef DisplacementFieldType::Pointer	DisplacementFieldPointer

typedef Superclass::DisplacementFieldType	DisplacementFieldType

typedef Superclass::FixedParametersType	FixedParametersType

typedef Superclass::FixedParametersValueType	FixedParametersValueType

typedef ConstantVelocityFieldType::IndexType	IndexType

typedef Superclass::InputPointType	InputPointType

typedef Superclass::InputVectorPixelType	InputVectorPixelType

typedef Superclass::InputVectorType	InputVectorType

typedef Superclass::InverseTransformBasePointer	InverseTransformBasePointer

typedef Superclass::NumberOfParametersType	NumberOfParametersType

typedef ImageVectorOptimizerParametersHelper < ScalarType, Dimension, ConstantVelocityFieldDimension >	OptimizerParametersHelperType

typedef Superclass::OutputPointType	OutputPointType

typedef Superclass::OutputVectorPixelType	OutputVectorPixelType

typedef Superclass::OutputVectorType	OutputVectorType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef ConstantVelocityFieldType::PixelType	PixelType

typedef SmartPointer< Self >	Pointer

typedef ConstantVelocityFieldType::PointType	PointType

typedef ConstantVelocityFieldType::RegionType	RegionType

typedef Superclass::ScalarType	ScalarType

typedef ConstantVelocityFieldTransform	Self

typedef ConstantVelocityFieldType::SizeType	SizeType

typedef ConstantVelocityFieldType::SpacingType	SpacingType

typedef DisplacementFieldTransform < TParametersValueType, NDimensions >	Superclass

typedef Superclass::TransformCategoryType	TransformCategoryType

typedef ConstantVelocityFieldType	VelocityFieldType

Public Types inherited from itk::DisplacementFieldTransform< TParametersValueType, NDimensions >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::DerivativeType	DerivativeType

typedef DisplacementFieldType::DirectionType	DirectionType

typedef DisplacementFieldType::ConstPointer	DisplacementFieldConstPointer

typedef DisplacementFieldType::Pointer	DisplacementFieldPointer

typedef Image < OutputVectorType, Dimension >	DisplacementFieldType

typedef Superclass::FixedParametersType	FixedParametersType

typedef Superclass::FixedParametersValueType	FixedParametersValueType

typedef DisplacementFieldType::IndexType	IndexType

typedef Superclass::InputCovariantVectorType	InputCovariantVectorType

typedef Superclass::InputDiffusionTensor3DType	InputDiffusionTensor3DType

typedef Superclass::InputPointType	InputPointType

typedef CovariantVector < ScalarType, InputDiffusionTensor3DType::Dimension >	InputTensorEigenVectorType

typedef Superclass::InputVectorPixelType	InputVectorPixelType

typedef Superclass::InputVectorType	InputVectorType

typedef Superclass::InputVnlVectorType	InputVnlVectorType

typedef VectorInterpolateImageFunction < DisplacementFieldType, ScalarType >	InterpolatorType

typedef Superclass::InverseTransformBasePointer	InverseTransformBasePointer

typedef Superclass::JacobianType	JacobianType

typedef Superclass::NumberOfParametersType	NumberOfParametersType

typedef ImageVectorOptimizerParametersHelper < ScalarType, OutputVectorType::Dimension, Dimension >	OptimizerParametersHelperType

typedef Superclass::OutputCovariantVectorType	OutputCovariantVectorType

typedef Superclass::OutputDiffusionTensor3DType	OutputDiffusionTensor3DType

typedef Superclass::OutputPointType	OutputPointType

typedef CovariantVector < ScalarType, OutputDiffusionTensor3DType::Dimension >	OutputTensorEigenVectorType

typedef Superclass::OutputVectorPixelType	OutputVectorPixelType

typedef Superclass::OutputVectorType	OutputVectorType

typedef Superclass::OutputVnlVectorType	OutputVnlVectorType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef DisplacementFieldType::PixelType	PixelType

typedef SmartPointer< Self >	Pointer

typedef DisplacementFieldType::PointType	PointType

typedef DisplacementFieldType::RegionType	RegionType

typedef Superclass::ScalarType	ScalarType

typedef DisplacementFieldTransform	Self

typedef DisplacementFieldType::SizeType	SizeType

typedef DisplacementFieldType::SpacingType	SpacingType

typedef Transform < TParametersValueType, NDimensions, NDimensions >	Superclass

typedef Superclass::TransformCategoryType	TransformCategoryType

Public Types inherited from itk::Transform< TParametersValueType, NDimensions, NDimensions >
typedef SmartPointer< const Self >	ConstPointer

typedef Array < ParametersValueType >	DerivativeType

typedef Matrix< double, itkGetStaticConstMacro(OutputSpaceDimension), itkGetStaticConstMacro(InputSpaceDimension)>	DirectionChangeMatrix

typedef Superclass::FixedParametersType	FixedParametersType

typedef Superclass::FixedParametersValueType	FixedParametersValueType

typedef CovariantVector < TParametersValueType, NInputDimensions >	InputCovariantVectorType

typedef DiffusionTensor3D < TParametersValueType >	InputDiffusionTensor3DType

typedef Matrix< double, itkGetStaticConstMacro(InputSpaceDimension), itkGetStaticConstMacro(InputSpaceDimension)>	InputDirectionMatrix

typedef Point < TParametersValueType, NInputDimensions >	InputPointType

typedef SymmetricSecondRankTensor < TParametersValueType, NInputDimensions >	InputSymmetricSecondRankTensorType

typedef VariableLengthVector < TParametersValueType >	InputVectorPixelType

typedef Vector < TParametersValueType, NInputDimensions >	InputVectorType

typedef vnl_vector_fixed < TParametersValueType, NInputDimensions >	InputVnlVectorType

typedef InverseTransformBaseType::Pointer	InverseTransformBasePointer

typedef Transform < TParametersValueType, NOutputDimensions, NInputDimensions >	InverseTransformBaseType

typedef Array2D < ParametersValueType >	JacobianType

typedef Matrix < TParametersValueType, itkGetStaticConstMacro(OutputSpaceDimension), itkGetStaticConstMacro(InputSpaceDimension)>	MatrixType

typedef Superclass::NumberOfParametersType	NumberOfParametersType

typedef CovariantVector < TParametersValueType, NOutputDimensions >	OutputCovariantVectorType

typedef DiffusionTensor3D < TParametersValueType >	OutputDiffusionTensor3DType

typedef Matrix< double, itkGetStaticConstMacro(OutputSpaceDimension), itkGetStaticConstMacro(OutputSpaceDimension)>	OutputDirectionMatrix

typedef Point < TParametersValueType, NOutputDimensions >	OutputPointType

typedef SymmetricSecondRankTensor < TParametersValueType, NOutputDimensions >	OutputSymmetricSecondRankTensorType

typedef VariableLengthVector < TParametersValueType >	OutputVectorPixelType

typedef Vector < TParametersValueType, NOutputDimensions >	OutputVectorType

typedef vnl_vector_fixed < TParametersValueType, NOutputDimensions >	OutputVnlVectorType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef ParametersValueType	ScalarType

typedef Transform	Self

typedef TransformBaseTemplate < TParametersValueType >	Superclass

typedef Superclass::TransformCategoryType	TransformCategoryType

Public Types inherited from itk::TransformBaseTemplate< TParametersValueType >
typedef SmartPointer< const Self >	ConstPointer

typedef OptimizerParameters < FixedParametersValueType >	FixedParametersType

typedef double	FixedParametersValueType

typedef IdentifierType	NumberOfParametersType

typedef OptimizerParameters < ParametersValueType >	ParametersType

typedef TParametersValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef TransformBaseTemplate	Self

typedef Object	Superclass

enum	TransformCategoryType { UnknownTransformCategory =0, Linear =1, BSpline =2, Spline =3, DisplacementField =4, VelocityField =5 }

Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef Object	Self

typedef LightObject	Superclass

Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightObject	Self

Public Member Functions
virtual void	CalculateNumberOfIntegrationStepsAutomaticallyOff ()

virtual void	CalculateNumberOfIntegrationStepsAutomaticallyOn ()

virtual ::itk::LightObject::Pointer	CreateAnother () const

virtual bool	GetCalculateNumberOfIntegrationStepsAutomatically () const

virtual const ModifiedTimeType &	GetConstantVelocityFieldSetTime () const

bool	GetInverse (Self *inverse) const

virtual InverseTransformBasePointer	GetInverseTransform () const override

virtual ScalarType	GetLowerTimeBound () const

virtual const char *	GetNameOfClass () const

virtual unsigned int	GetNumberOfIntegrationSteps () const

virtual ScalarType	GetUpperTimeBound () const

virtual void	IntegrateVelocityField ()

virtual void	SetCalculateNumberOfIntegrationStepsAutomatically (bool _arg)

virtual void	SetFixedParameters (const FixedParametersType &) override

virtual void	SetLowerTimeBound (ScalarType _arg)

virtual void	SetNumberOfIntegrationSteps (unsigned int _arg)

virtual void	SetUpperTimeBound (ScalarType _arg)

virtual void	UpdateTransformParameters (const DerivativeType &update, ScalarType factor=1.0) override


virtual void	SetConstantVelocityField (ConstantVelocityFieldType *)

virtual ConstantVelocityFieldType *	GetModifiableConstantVelocityField ()

virtual const ConstantVelocityFieldType *	GetConstantVelocityField () const


virtual void	SetConstantVelocityFieldInterpolator (ConstantVelocityFieldInterpolatorType *)

virtual ConstantVelocityFieldInterpolatorType *	GetModifiableConstantVelocityFieldInterpolator ()

virtual const ConstantVelocityFieldInterpolatorType *	GetConstantVelocityFieldInterpolator () const

Public Member Functions inherited from itk::DisplacementFieldTransform< TParametersValueType, NDimensions >
virtual void	ComputeInverseJacobianWithRespectToPosition (const InputPointType &x, JacobianType &j) const override

virtual void	ComputeJacobianWithRespectToParameters (const IndexType &, JacobianType &j) const

virtual void	ComputeJacobianWithRespectToPosition (const InputPointType &x, JacobianType &j) const override

virtual void	ComputeJacobianWithRespectToPosition (const IndexType &x, JacobianType &j) const

virtual ::itk::LightObject::Pointer	CreateAnother () const

virtual const ModifiedTimeType &	GetDisplacementFieldSetTime () const

bool	GetInverse (Self *inverse) const

virtual void	GetInverseJacobianOfForwardFieldWithRespectToPosition (const InputPointType &point, JacobianType &jacobian, bool useSVD=false) const

virtual void	GetInverseJacobianOfForwardFieldWithRespectToPosition (const IndexType &index, JacobianType &jacobian, bool useSVD=false) const

virtual NumberOfParametersType	GetNumberOfLocalParameters (void) const override

virtual TransformCategoryType	GetTransformCategory () const override

virtual void	SetIdentity ()

virtual OutputVectorPixelType	TransformCovariantVector (const InputVectorPixelType &) const override

OutputVectorPixelType	TransformDiffusionTensor (const InputVectorPixelType &) const

virtual OutputPointType	TransformPoint (const InputPointType &thisPoint) const override

virtual OutputVectorPixelType	TransformVector (const InputVectorPixelType &) const override

virtual OutputVnlVectorType	TransformVector (const InputVnlVectorType &) const override

virtual void	SetDisplacementField (DisplacementFieldType *field)

virtual DisplacementFieldType *	GetModifiableDisplacementField ()

virtual const DisplacementFieldType *	GetDisplacementField () const

virtual void	SetInverseDisplacementField (DisplacementFieldType *inverseDisplacementField)

virtual DisplacementFieldType *	GetModifiableInverseDisplacementField ()

virtual const DisplacementFieldType *	GetInverseDisplacementField () const

virtual void	SetInterpolator (InterpolatorType *interpolator)

virtual InterpolatorType *	GetModifiableInterpolator ()

virtual const InterpolatorType *	GetInterpolator () const

virtual void	SetInverseInterpolator (InterpolatorType *interpolator)

virtual InterpolatorType *	GetModifiableInverseInterpolator ()

virtual const InterpolatorType *	GetInverseInterpolator () const

virtual OutputVectorType	TransformVector (const InputVectorType &) const override

OutputDiffusionTensor3DType	TransformDiffusionTensor (const InputDiffusionTensor3DType &) const

virtual OutputCovariantVectorType	TransformCovariantVector (const InputCovariantVectorType &) const override

virtual void	SetParameters (const ParametersType &params) override

virtual void	ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &j) const override

virtual void	SetCoordinateTolerance (double _arg)

virtual double	GetCoordinateTolerance () const

virtual void	SetDirectionTolerance (double _arg)

virtual double	GetDirectionTolerance () const

Public Member Functions inherited from itk::Transform< TParametersValueType, NDimensions, NDimensions >
virtual void	ComputeInverseJacobianWithRespectToPosition (const InputPointType &x, JacobianType &jacobian) const

virtual void	ComputeJacobianWithRespectToParameters (const InputPointType &, JacobianType &) const =0

virtual void	ComputeJacobianWithRespectToParametersCachedTemporaries (const InputPointType &p, JacobianType &jacobian, JacobianType &) const

virtual void	ComputeJacobianWithRespectToPosition (const InputPointType &, JacobianType &) const

virtual void	CopyInFixedParameters (const FixedParametersValueType const begin, const FixedParametersValueType const end) override

virtual void	CopyInParameters (const ParametersValueType const begin, const ParametersValueType const end) override

virtual const FixedParametersType &	GetFixedParameters (void) const override

unsigned int	GetInputSpaceDimension (void) const override

bool	GetInverse (Self *) const

virtual NumberOfParametersType	GetNumberOfFixedParameters () const

virtual NumberOfParametersType	GetNumberOfParameters (void) const override

unsigned int	GetOutputSpaceDimension (void) const override

virtual const ParametersType &	GetParameters (void) const override

virtual std::string	GetTransformTypeAsString () const override

virtual bool	IsLinear () const

	itkCloneMacro (Self)

virtual void	SetParametersByValue (const ParametersType &p) override

virtual OutputCovariantVectorType	TransformCovariantVector (const InputCovariantVectorType &) const

virtual OutputCovariantVectorType	TransformCovariantVector (const InputCovariantVectorType &vector, const InputPointType &point) const

virtual OutputVectorPixelType	TransformCovariantVector (const InputVectorPixelType &) const

virtual OutputVectorPixelType	TransformCovariantVector (const InputVectorPixelType &vector, const InputPointType &point) const

virtual OutputDiffusionTensor3DType	TransformDiffusionTensor3D (const InputDiffusionTensor3DType &) const

virtual OutputDiffusionTensor3DType	TransformDiffusionTensor3D (const InputDiffusionTensor3DType &tensor, const InputPointType &point) const

virtual OutputVectorPixelType	TransformDiffusionTensor3D (const InputVectorPixelType &) const

virtual OutputVectorPixelType	TransformDiffusionTensor3D (const InputVectorPixelType &tensor, const InputPointType &point) const

virtual OutputPointType	TransformPoint (const InputPointType &) const =0

virtual OutputSymmetricSecondRankTensorType	TransformSymmetricSecondRankTensor (const InputSymmetricSecondRankTensorType &tensor, const InputPointType &point) const

virtual OutputSymmetricSecondRankTensorType	TransformSymmetricSecondRankTensor (const InputSymmetricSecondRankTensorType &) const

virtual OutputVectorPixelType	TransformSymmetricSecondRankTensor (const InputVectorPixelType &) const

virtual OutputVectorPixelType	TransformSymmetricSecondRankTensor (const InputVectorPixelType &tensor, const InputPointType &point) const

virtual OutputVectorType	TransformVector (const InputVectorType &) const

virtual OutputVectorType	TransformVector (const InputVectorType &vector, const InputPointType &point) const

virtual OutputVnlVectorType	TransformVector (const InputVnlVectorType &) const

virtual OutputVnlVectorType	TransformVector (const InputVnlVectorType &vector, const InputPointType &point) const

virtual OutputVectorPixelType	TransformVector (const InputVectorPixelType &) const

virtual OutputVectorPixelType	TransformVector (const InputVectorPixelType &vector, const InputPointType &point) const

virtual void	UpdateTransformParameters (const DerivativeType &update, ParametersValueType factor=1.0)

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)

unsigned long	AddObserver (const EventObject &event, Command *) const

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary ()

const MetaDataDictionary &	GetMetaDataDictionary () const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

virtual void	Register () const override

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag)

void	SetDebug (bool debugFlag) const

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

virtual void	SetReferenceCount (int) override

virtual void	UnRegister () const noexceptoverride

virtual void	SetObjectName (std::string _arg)

virtual const std::string &	GetObjectName () const

Public Member Functions inherited from itk::LightObject
virtual void	Delete ()

virtual int	GetReferenceCount () const

	itkCloneMacro (Self)

void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::DisplacementFieldTransform< TParametersValueType, NDimensions >
static Pointer	New ()

Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool flag)

Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Static Public Attributes
static const unsigned int	ConstantVelocityFieldDimension = NDimensions

static const unsigned int	Dimension = NDimensions

Static Public Attributes inherited from itk::DisplacementFieldTransform< TParametersValueType, NDimensions >
static const unsigned int	Dimension = NDimensions

Static Public Attributes inherited from itk::Transform< TParametersValueType, NDimensions, NDimensions >
static const unsigned int	InputSpaceDimension

static const unsigned int	OutputSpaceDimension

Protected Member Functions
	ConstantVelocityFieldTransform ()

DisplacementFieldType::Pointer	CopyDisplacementField (const DisplacementFieldType *) const

virtual LightObject::Pointer	InternalClone () const override

void	PrintSelf (std::ostream &os, Indent indent) const override

virtual	~ConstantVelocityFieldTransform ()

Protected Member Functions inherited from itk::DisplacementFieldTransform< TParametersValueType, NDimensions >
	DisplacementFieldTransform ()

void	PrintSelf (std::ostream &os, Indent indent) const override

virtual	~DisplacementFieldTransform ()

Protected Member Functions inherited from itk::Transform< TParametersValueType, NDimensions, NDimensions >
OutputDiffusionTensor3DType	PreservationOfPrincipalDirectionDiffusionTensor3DReorientation (const InputDiffusionTensor3DType, const JacobianType) const

	Transform ()

	Transform (NumberOfParametersType NumberOfParameters)

virtual	~Transform ()

Protected Member Functions inherited from itk::TransformBaseTemplate< TParametersValueType >
	TransformBaseTemplate ()

virtual	~TransformBaseTemplate ()

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &time)

virtual	~Object ()

Protected Member Functions inherited from itk::LightObject
	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Protected Attributes
bool	m_CalculateNumberOfIntegrationStepsAutomatically

ConstantVelocityFieldPointer	m_ConstantVelocityField

ConstantVelocityFieldInterpolatorPointer	m_ConstantVelocityFieldInterpolator

ModifiedTimeType	m_ConstantVelocityFieldSetTime

ScalarType	m_LowerTimeBound

unsigned int	m_NumberOfIntegrationSteps

ScalarType	m_UpperTimeBound

Protected Attributes inherited from itk::DisplacementFieldTransform< TParametersValueType, NDimensions >
DisplacementFieldType::Pointer	m_DisplacementField

ModifiedTimeType	m_DisplacementFieldSetTime

JacobianType	m_IdentityJacobian

InterpolatorType::Pointer	m_Interpolator

DisplacementFieldType::Pointer	m_InverseDisplacementField

InterpolatorType::Pointer	m_InverseInterpolator

Protected Attributes inherited from itk::Transform< TParametersValueType, NDimensions, NDimensions >
DirectionChangeMatrix	m_DirectionChange

FixedParametersType	m_FixedParameters

ParametersType	m_Parameters

Protected Attributes inherited from itk::LightObject
AtomicInt< int >	m_ReferenceCount

Private Member Functions
	ConstantVelocityFieldTransform (const Self &) ITK_DELETE_FUNCTION

void	operator= (const Self &) ITK_DELETE_FUNCTION

virtual void	SetFixedParametersFromConstantVelocityField () const