itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType > Class Template Reference

#include <itkDiffusionTensor3DReconstructionImageFilter.h>

Inheritance diagram for itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >:

Collaboration diagram for itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >:

Detailed Description

template<typename TReferenceImagePixelType, typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>
class itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >

This class takes as input one or more reference image (acquired in the absence of diffusion sensitizing gradients) and 'n' diffusion weighted images and their gradient directions and computes an image of tensors. (with DiffusionTensor3D as the pixel type). Once that is done, you can apply filters on this tensor image to compute FA, ADC, RGB weighted maps etc.

Inputs and Usage

There are two ways to use this class. When you have one reference image and n gradient images, you would use the class as

*       filter->SetReferenceImage( image0 );
*       filter->AddGradientImage( direction1, image1 );
*       filter->AddGradientImage( direction2, image2 );
*   ...
* 

When you have the 'n' gradient and one or more reference images in a single multi-component image (VectorImage), you can specify the images simply as

*       filter->SetGradientImage( directionsContainer, vectorImage );
* 

Note that this method is used to specify both the reference and gradient images. This is convenient when the DWI images are read in using the NRRD format. Like the Nrrd format, the reference images are those components of the vectorImage whose gradient direction is (0,0,0). If more than one reference image is present, they are averaged prior to applying the Stejskal-Tanner equations.

Outputs

The output image is an image of Tensors:

*       Image< DiffusionTensor3D< TTensorPixelType >, 3 >
* 

Parameters

• Threshold - Threshold on the reference image data. The output tensor will be a null tensor for pixels in the reference image that have a value less than this.
• BValue - See the documentation of SetBValue().
• At least 6 gradient images must be specified for the filter to be able to run.

Template parameters

The class is templated over the pixel type of the reference and gradient images (expected to be scalar data types) and the internal representation of the DiffusionTensor3D pixel (double, float etc).

References:

• [1] C.F.Westin, S.E.Maier, H.Mamata, A.Nabavi, F.A.Jolesz, R.Kikinis, "Processing and visualization for Diffusion tensor MRI", Medical image Analysis, 2002, pp 93-108.
• [2] A Dual Tensor Basis Solution to the Stejskal-Tanner Equations for DT-MRI

Warning

Although this filter has been written to support multiple threads, please set the number of threads to 1.

*         filter->SetNumberOfThreads(1);
* 

This is due to buggy code in netlib/dsvdc, that is called by vnl_svd. (used to compute the pseudo-inverse to find the dual tensor basis).

Author

Xiaodong Tao, GE, for contributing parts of this class.

Casey Goodlet, UNC for patches to support multiple baseline images and other improvements.

Note

This work is part of the National Alliance for Medical image Computing (NAMIC), funded by the National Institutes of Health through the NIH Roadmap for Medical Research, Grant U54 EB005149.

Examples and Datasets

Sample DTI datasets may be obtained from

*   \li ftp://public.kitware.com/pub/namic/DTI/Data/dwi.nhdr
*   \li ftp://public.kitware.com/pub/namic/DTI/Data/dwi.img.gz ( gunzip this )
* 

See Also

DiffusionTensor3D SymmetricSecondRankTensor

Examples:

Examples/Filtering/DiffusionTensor3DReconstructionImageFilter.cxx.

Definition at line 126 of file itkDiffusionTensor3DReconstructionImageFilter.h.

Public Types
typedef vnl_matrix< double >	CoefficientMatrixType
typedef SmartPointer< const Self >	ConstPointer
typedef VectorContainer < unsigned int, GradientDirectionType >	GradientDirectionContainerType
typedef vnl_vector_fixed < double, 3 >	GradientDirectionType
typedef VectorImage < GradientPixelType, 3 >	GradientImagesType
typedef Image < GradientPixelType, 3 >	GradientImageType
typedef TGradientImagePixelType	GradientPixelType
typedef TMaskImageType	MaskImageType
typedef SpatialObject< 3 >	MaskSpatialObjectType
typedef Superclass::OutputImageRegionType	OutputImageRegionType
typedef TensorImageType	OutputImageType
typedef SmartPointer< Self >	Pointer
typedef Superclass::InputImageType	ReferenceImageType
typedef TReferenceImagePixelType	ReferencePixelType
typedef DiffusionTensor3DReconstructionImageFilter	Self
typedef ImageToImageFilter < Image < TReferenceImagePixelType, 3 > , Image< DiffusionTensor3D < TTensorPixelType >, 3 > >	Superclass
typedef vnl_matrix_fixed < double, 6, 6 >	TensorBasisMatrixType
typedef Image< TensorPixelType, 3 >	TensorImageType
typedef DiffusionTensor3D < TTensorPixelType >	TensorPixelType
Public Types inherited from itk::ImageToImageFilter< Image< TReferenceImagePixelType, 3 >, Image< DiffusionTensor3D< TTensorPixelType >, 3 > >
typedef SmartPointer< const Self >	ConstPointer
typedef InputImageType::ConstPointer	InputImageConstPointer
typedef InputImageType::PixelType	InputImagePixelType
typedef InputImageType::Pointer	InputImagePointer
typedef InputImageType::RegionType	InputImageRegionType
typedef Image < TReferenceImagePixelType, 3 >	InputImageType
typedef Superclass::OutputImagePixelType	OutputImagePixelType
typedef Superclass::OutputImageRegionType	OutputImageRegionType
typedef SmartPointer< Self >	Pointer
typedef ImageToImageFilter	Self
typedef ImageSource< Image < DiffusionTensor3D < TTensorPixelType >, 3 > >	Superclass
Public Types inherited from itk::ImageSource< Image< DiffusionTensor3D< TTensorPixelType >, 3 > >
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::DataObjectIdentifierType	DataObjectIdentifierType
typedef DataObject::Pointer	DataObjectPointer
typedef Superclass::DataObjectPointerArraySizeType	DataObjectPointerArraySizeType
typedef OutputImageType::PixelType	OutputImagePixelType
typedef OutputImageType::Pointer	OutputImagePointer
typedef OutputImageType::RegionType	OutputImageRegionType
typedef Image < DiffusionTensor3D < TTensorPixelType >, 3 >	OutputImageType
typedef SmartPointer< Self >	Pointer
typedef ImageSource	Self
typedef ProcessObject	Superclass
Public Types inherited from itk::ProcessObject
typedef SmartPointer< const Self >	ConstPointer
typedef DataObject::DataObjectIdentifierType	DataObjectIdentifierType
typedef DataObject::Pointer	DataObjectPointer
typedef std::vector < DataObjectPointer >	DataObjectPointerArray
typedef DataObjectPointerArray::size_type	DataObjectPointerArraySizeType
typedef std::vector < DataObjectIdentifierType >	NameArray
typedef SmartPointer< Self >	Pointer
typedef ProcessObject	Self
typedef Object	Superclass
Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef Object	Self
typedef LightObject	Superclass
Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef LightObject	Self

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother () const
virtual const char *	GetNameOfClass () const
virtual ReferenceImageType *	GetReferenceImage ()
void	SetGradientImage (GradientDirectionContainerType *, const GradientImagesType *image)
void	SetMaskImage (MaskImageType *maskImage)
void	SetMaskSpatialObject (MaskSpatialObjectType *maskSpatialObject)
void	SetReferenceImage (ReferenceImageType *referenceImage)
	typedef (Concept::EqualityComparable< ReferencePixelType >) ReferenceEqualityComparableCheck
	typedef (Concept::EqualityComparable< TensorPixelType >) TensorEqualityComparableCheck
	typedef (Concept::Convertible< GradientPixelType, double >) GradientConvertibleToDoubleCheck
	typedef (Concept::Convertible< double, TensorPixelType >) DoubleConvertibleToTensorCheck
	typedef (Concept::AdditiveOperators< GradientPixelType, GradientPixelType, ReferencePixelType >) GradientReferenceAdditiveOperatorsCheck
	typedef (Concept::AdditiveAndAssignOperators< GradientPixelType, ReferencePixelType >) GradientReferenceAdditiveAndAssignOperatorsCheck
	typedef (Concept::OStreamWritable< ReferencePixelType >) ReferenceOStreamWritableCheck
	typedef (Concept::OStreamWritable< TensorPixelType >) TensorOStreamWritableCheck
void	AddGradientImage (const GradientDirectionType &, const GradientImageType *image)
const GradientImageType *	GetGradientImage (unsigned index) const
virtual GradientDirectionType	GetGradientDirection (unsigned int idx) const
virtual void	SetThreshold (ReferencePixelType _arg)
virtual ReferencePixelType	GetThreshold () const
virtual void	SetBValue (TTensorPixelType _arg)
virtual const TTensorPixelType &	GetBValue () const
Public Member Functions inherited from itk::ImageToImageFilter< Image< TReferenceImagePixelType, 3 >, Image< DiffusionTensor3D< TTensorPixelType >, 3 > >
const InputImageType *	GetInput () const
const InputImageType *	GetInput (unsigned int idx) const
virtual void	PopBackInput () override
virtual void	PopFrontInput () override
virtual void	PushBackInput (const InputImageType *image)
virtual void	PushFrontInput (const InputImageType *image)
virtual void	SetInput (const InputImageType *image)
virtual void	SetInput (unsigned int, const Image< TReferenceImagePixelType, 3 > *image)
virtual void	SetCoordinateTolerance (double _arg)
virtual double	GetCoordinateTolerance () const
virtual void	SetDirectionTolerance (double _arg)
virtual double	GetDirectionTolerance () const
Public Member Functions inherited from itk::ImageSource< Image< DiffusionTensor3D< TTensorPixelType >, 3 > >
OutputImageType *	GetOutput (unsigned int idx)
virtual void	GraftNthOutput (unsigned int idx, DataObject *output)
virtual void	GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
OutputImageType *	GetOutput ()
const OutputImageType *	GetOutput () const
virtual void	GraftOutput (DataObject *output)
virtual ProcessObject::DataObjectPointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override
virtual ProcessObject::DataObjectPointer	MakeOutput (const ProcessObject::DataObjectIdentifierType &) override
Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()
virtual void	AbortGenerateDataOn ()
virtual void	EnlargeOutputRequestedRegion (DataObject *)
virtual const bool &	GetAbortGenerateData () const
DataObjectPointerArray	GetIndexedInputs ()
DataObjectPointerArray	GetIndexedOutputs ()
NameArray	GetInputNames () const
DataObjectPointerArray	GetInputs ()
MultiThreader *	GetMultiThreader () const
DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const
DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const
DataObjectPointerArraySizeType	GetNumberOfInputs () const
DataObjectPointerArraySizeType	GetNumberOfOutputs () const
virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const
NameArray	GetOutputNames () const
DataObjectPointerArray	GetOutputs ()
virtual const float &	GetProgress () const
NameArray	GetRequiredInputNames () const
bool	HasInput (const DataObjectIdentifierType &key) const
bool	HasOutput (const DataObjectIdentifierType &key) const
virtual void	PrepareOutputs ()
virtual void	PropagateRequestedRegion (DataObject *output)
virtual void	ResetPipeline ()
virtual void	SetAbortGenerateData (bool _arg)
virtual void	Update ()
virtual void	UpdateLargestPossibleRegion ()
virtual void	UpdateOutputData (DataObject *output)
virtual void	UpdateOutputInformation ()
void	UpdateProgress (float progress)
void	SetProgress (float progress)
virtual void	SetReleaseDataFlag (bool flag)
virtual bool	GetReleaseDataFlag () const
void	ReleaseDataFlagOn ()
void	ReleaseDataFlagOff ()
virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual const bool &	GetReleaseDataBeforeUpdateFlag () const
virtual void	ReleaseDataBeforeUpdateFlagOn ()
virtual void	ReleaseDataBeforeUpdateFlagOff ()
virtual void	SetNumberOfThreads (ThreadIdType _arg)
virtual const ThreadIdType &	GetNumberOfThreads () const
Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
virtual void	DebugOff () const
virtual void	DebugOn () const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
MetaDataDictionary &	GetMetaDataDictionary ()
const MetaDataDictionary &	GetMetaDataDictionary () const
virtual ModifiedTimeType	GetMTime () const
virtual const TimeStamp &	GetTimeStamp () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
virtual void	Register () const override
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
void	SetDebug (bool debugFlag) const
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetReferenceCount (int) override
virtual void	UnRegister () const noexceptoverride
virtual void	SetObjectName (std::string _arg)
virtual const std::string &	GetObjectName () const
Public Member Functions inherited from itk::LightObject
virtual void	Delete ()
virtual int	GetReferenceCount () const
	itkCloneMacro (Self)
void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOff ()
static void	GlobalWarningDisplayOn ()
static Pointer	New ()
static void	SetGlobalWarningDisplay (bool flag)
Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()
static Pointer	New ()

Protected Types
enum	GradientImageTypeEnumeration {   GradientIsInASingleImage = 1,   GradientIsInManyImages,   Else }
Protected Types inherited from itk::ImageToImageFilter< Image< TReferenceImagePixelType, 3 >, Image< DiffusionTensor3D< TTensorPixelType >, 3 > >
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension) >	InputToOutputRegionCopierType
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension) >	OutputToInputRegionCopierType

Protected Member Functions
void	BeforeThreadedGenerateData () override
void	ComputeTensorBasis ()
	DiffusionTensor3DReconstructionImageFilter ()
void	PrintSelf (std::ostream &os, Indent indent) const override
void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType) override
void	VerifyPreconditions () override
	~DiffusionTensor3DReconstructionImageFilter ()
Protected Member Functions inherited from itk::ImageToImageFilter< Image< TReferenceImagePixelType, 3 >, Image< DiffusionTensor3D< TTensorPixelType >, 3 > >
virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
virtual void	GenerateInputRequestedRegion () override
	ImageToImageFilter ()
virtual void	VerifyInputInformation () override
	~ImageToImageFilter ()
void	PushBackInput (const DataObject *input) override
void	PushFrontInput (const DataObject *input) override
Protected Member Functions inherited from itk::ImageSource< Image< DiffusionTensor3D< TTensorPixelType >, 3 > >
virtual void	AfterThreadedGenerateData ()
virtual void	AllocateOutputs ()
virtual void	GenerateData () override
virtual const ImageRegionSplitterBase *	GetImageRegionSplitter () const
	ImageSource ()
virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)
virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
virtual	~ImageSource ()
Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)
virtual void	AddOutput (DataObject *output)
bool	AddRequiredInputName (const DataObjectIdentifierType &)
bool	AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
virtual void	CacheInputReleaseDataFlags ()
virtual void	GenerateOutputInformation ()
virtual void	GenerateOutputRequestedRegion (DataObject *output)
DataObject *	GetInput (const DataObjectIdentifierType &key)
const DataObject *	GetInput (const DataObjectIdentifierType &key) const
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs () const
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs () const
bool	IsIndexedInputName (const DataObjectIdentifierType &) const
bool	IsIndexedOutputName (const DataObjectIdentifierType &) const
bool	IsRequiredInputName (const DataObjectIdentifierType &) const
	itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
	itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
	itkLegacyMacro (virtual void RemoveInput(DataObject *input))
	itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
DataObjectPointerArraySizeType	MakeIndexFromInputName (const DataObjectIdentifierType &name) const
DataObjectPointerArraySizeType	MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
DataObjectIdentifierType	MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
DataObjectIdentifierType	MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
	ProcessObject ()
virtual void	PropagateResetPipeline ()
virtual void	ReleaseInputs ()
virtual void	RemoveInput (const DataObjectIdentifierType &key)
virtual void	RemoveInput (DataObjectPointerArraySizeType)
virtual void	RemoveOutput (const DataObjectIdentifierType &key)
virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)
bool	RemoveRequiredInputName (const DataObjectIdentifierType &)
virtual void	RestoreInputReleaseDataFlags ()
virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void	SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
virtual void	SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
virtual void	SetOutput (const DataObjectIdentifierType &key, DataObject *output)
virtual void	SetPrimaryInput (DataObject *input)
virtual void	SetPrimaryOutput (DataObject *output)
void	SetRequiredInputNames (const NameArray &)
	~ProcessObject ()
DataObject *	GetInput (DataObjectPointerArraySizeType idx)
const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryInput ()
const DataObject *	GetPrimaryInput () const
virtual void	SetPrimaryInputName (const DataObjectIdentifierType &key)
virtual const char *	GetPrimaryInputName (void) const
DataObject *	GetOutput (const DataObjectIdentifierType &key)
const DataObject *	GetOutput (const DataObjectIdentifierType &key) const
virtual void	SetPrimaryOutputName (const DataObjectIdentifierType &key)
virtual const char *	GetPrimaryOutputName (void) const
DataObject *	GetOutput (DataObjectPointerArraySizeType idx)
const DataObject *	GetOutput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryOutput ()
const DataObject *	GetPrimaryOutput () const
Protected Member Functions inherited from itk::Object
	Object ()
bool	PrintObservers (std::ostream &os, Indent indent) const
virtual void	SetTimeStamp (const TimeStamp &time)
virtual	~Object ()
Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()

Private Attributes
CoefficientMatrixType	m_BMatrix
TTensorPixelType	m_BValue
GradientDirectionContainerType::Pointer	m_GradientDirectionContainer
GradientImageTypeEnumeration	m_GradientImageTypeEnumeration
bool	m_MaskImagePresent
unsigned int	m_NumberOfBaselineImages
unsigned int	m_NumberOfGradientDirections
TensorBasisMatrixType	m_TensorBasis
ReferencePixelType	m_Threshold

Additional Inherited Members
Static Public Attributes inherited from itk::ImageToImageFilter< Image< TReferenceImagePixelType, 3 >, Image< DiffusionTensor3D< TTensorPixelType >, 3 > >
static const unsigned int	InputImageDimension
static const unsigned int	OutputImageDimension
Static Public Attributes inherited from itk::ImageSource< Image< DiffusionTensor3D< TTensorPixelType >, 3 > >
static const unsigned int	OutputImageDimension
Static Protected Member Functions inherited from itk::ImageSource< Image< DiffusionTensor3D< TTensorPixelType >, 3 > >
static const ImageRegionSplitterBase *	GetGlobalDefaultSplitter ()
static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)
Protected Attributes inherited from itk::ProcessObject
TimeStamp	m_OutputInformationMTime
bool	m_Updating
Protected Attributes inherited from itk::LightObject
AtomicInt< int >	m_ReferenceCount

Member Typedef Documentation

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

typedef vnl_matrix< double > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::CoefficientMatrixType

Definition at line 181 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

typedef SmartPointer< const Self > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::ConstPointer

Definition at line 134 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

typedef VectorContainer< unsigned int, GradientDirectionType > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GradientDirectionContainerType

Container to hold gradient directions of the 'n' DW measurements

Definition at line 188 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

typedef vnl_vector_fixed< double, 3 > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GradientDirectionType

Holds each magnetic field gradient used to acquire one DWImage

Definition at line 184 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

typedef VectorImage< GradientPixelType, 3 > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GradientImagesType

An alternative typedef defining one (of the many) gradient images. It will be assumed that the vectorImage has the same dimension as the Reference image and a vector length parameter of n (number of gradient directions)

Definition at line 170 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

typedef Image< GradientPixelType, 3 > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GradientImageType

Typedef defining one (of the many) gradient images.

Definition at line 164 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

typedef TGradientImagePixelType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GradientPixelType

Definition at line 148 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

typedef TMaskImageType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::MaskImageType

The type for the optional mask image

Definition at line 176 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

typedef SpatialObject<3> itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::MaskSpatialObjectType

The type for the optional SpatialObject for masking

Definition at line 173 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

typedef Superclass::OutputImageRegionType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::OutputImageRegionType

Definition at line 161 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

typedef TensorImageType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::OutputImageType

Definition at line 158 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

typedef SmartPointer< Self > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::Pointer

Definition at line 133 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

typedef Superclass::InputImageType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::ReferenceImageType

Reference image data, This image is acquired in the absence of a diffusion sensitizing field gradient

Definition at line 154 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

typedef TReferenceImagePixelType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::ReferencePixelType

Definition at line 144 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

typedef DiffusionTensor3DReconstructionImageFilter itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::Self

Definition at line 132 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

typedef ImageToImageFilter< Image< TReferenceImagePixelType, 3 >, Image< DiffusionTensor3D< TTensorPixelType >, 3 > > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::Superclass

Definition at line 137 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

typedef vnl_matrix_fixed< double, 6, 6 > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::TensorBasisMatrixType

Holds the tensor basis coefficients G_k

Definition at line 179 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

typedef Image< TensorPixelType, 3 > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::TensorImageType

Definition at line 156 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

typedef DiffusionTensor3D< TTensorPixelType > itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::TensorPixelType

Definition at line 150 of file itkDiffusionTensor3DReconstructionImageFilter.h.

Member Enumeration Documentation

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

enum itk::DiffusionTensor3DReconstructionImageFilter::GradientImageTypeEnumeration

protected

enum to indicate if the gradient image is specified as a single multi- component image or as several separate images

Enumerator
GradientIsInASingleImage
GradientIsInManyImages
Else

Definition at line 300 of file itkDiffusionTensor3DReconstructionImageFilter.h.

Constructor & Destructor Documentation

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::DiffusionTensor3DReconstructionImageFilter ( )

protected

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::~DiffusionTensor3DReconstructionImageFilter ( )

inlineprotected

Definition at line 286 of file itkDiffusionTensor3DReconstructionImageFilter.h.

Member Function Documentation

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::AddGradientImage	(	const GradientDirectionType &	,
		const GradientImageType *	image
	)

Set method to add a gradient direction and its corresponding image.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::BeforeThreadedGenerateData ( void  )

overrideprotectedvirtual

If an imaging filter needs to perform processing after the buffer has been allocated but before threads are spawned, the filter can can provide an implementation for BeforeThreadedGenerateData(). The execution flow in the default GenerateData() method will be: 1) Allocate the output buffer 2) Call BeforeThreadedGenerateData() 3) Spawn threads, calling ThreadedGenerateData() in each thread. 4) Call AfterThreadedGenerateData() Note that this flow of control is only available if a filter provides a ThreadedGenerateData() method and NOT a GenerateData() method.

Reimplemented from itk::ImageSource< Image< DiffusionTensor3D< TTensorPixelType >, 3 > >.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::ComputeTensorBasis ( )

protected

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

virtual::itk::LightObject::Pointer itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::CreateAnother ( ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

virtual const TTensorPixelType& itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GetBValue ( ) const

virtual

The BValue value used in normalizing the tensors to physically meaningful units. See equation (24) of the first reference for a description of how this is applied to the tensor estimation. Equation (1) of the same reference describes the physical significance.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

virtual GradientDirectionType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GetGradientDirection ( unsigned int  idx ) const

inlinevirtual

Return the gradient direction. idx is 0 based

Definition at line 223 of file itkDiffusionTensor3DReconstructionImageFilter.h.

References itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::m_GradientDirectionContainer, and itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::m_NumberOfGradientDirections.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

const GradientImageType* itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GetGradientImage

(

unsigned

index

)

const

Set method to add a gradient direction and its corresponding image.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

virtual const char* itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GetNameOfClass ( ) const

virtual

Runtime information support.

Reimplemented from itk::ImageToImageFilter< Image< TReferenceImagePixelType, 3 >, Image< DiffusionTensor3D< TTensorPixelType >, 3 > >.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

virtual ReferenceImageType* itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GetReferenceImage ( )

inlinevirtual

Get reference image

Definition at line 219 of file itkDiffusionTensor3DReconstructionImageFilter.h.

References itk::ProcessObject::GetInput().

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

virtual ReferencePixelType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GetThreshold ( ) const

virtual

Threshold on the reference image data. The output tensor will be a null tensor for pixels in the reference image that have a value less than this threshold.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

static Pointer itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::New ( )

static

Method for creation through the object factory.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageToImageFilter< Image< TReferenceImagePixelType, 3 >, Image< DiffusionTensor3D< TTensorPixelType >, 3 > >.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

virtual void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::SetBValue ( TTensorPixelType  _arg )

virtual

The BValue value used in normalizing the tensors to physically meaningful units. See equation (24) of the first reference for a description of how this is applied to the tensor estimation. Equation (1) of the same reference describes the physical significance.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::SetGradientImage	(	GradientDirectionContainerType *	,
		const GradientImagesType *	image
	)

Another set method to add a gradient directions and its corresponding image. The image here is a VectorImage. The user is expected to pass the gradient directions in a container. The ith element of the container corresponds to the gradient direction of the ith component image the VectorImage. For the baseline image, a vector of all zeros should be set.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::SetMaskImage

(

MaskImageType *

maskImage

)

set an image mask

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::SetMaskSpatialObject

(

MaskSpatialObjectType *

maskSpatialObject

)

set a spatial object mask

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::SetReferenceImage ( ReferenceImageType *  referenceImage )

inline

Set method to set the reference image.

Definition at line 205 of file itkDiffusionTensor3DReconstructionImageFilter.h.

References itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GradientIsInASingleImage, itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GradientIsInManyImages, itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::m_GradientImageTypeEnumeration, and itk::ProcessObject::SetNthInput().

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

virtual void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::SetThreshold ( ReferencePixelType  _arg )

virtual

Threshold on the reference image data. The output tensor will be a null tensor for pixels in the reference image that have a value less than this threshold.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::ThreadedGenerateData ( const OutputImageRegionType &  outputRegionForThread, ThreadIdType    )

overrideprotected

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::typedef

(

Concept::EqualityComparable< ReferencePixelType >

)

This class requires ReferenceEqualityComparableCheck in the form of ( Concept::EqualityComparable< ReferencePixelType > )

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::typedef

(

Concept::EqualityComparable< TensorPixelType >

)

This class requires TensorEqualityComparableCheck in the form of ( Concept::EqualityComparable< TensorPixelType > )

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::typedef

(

Concept::Convertible< GradientPixelType, double >

)

This class requires GradientConvertibleToDoubleCheck in the form of ( Concept::Convertible< GradientPixelType, double > )

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::typedef

(

Concept::Convertible< double, TensorPixelType >

)

This class requires DoubleConvertibleToTensorCheck in the form of ( Concept::Convertible< double, TensorPixelType > )

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::typedef

(

Concept::AdditiveOperators< GradientPixelType, GradientPixelType, ReferencePixelType >

)

This class requires GradientReferenceAdditiveOperatorsCheck in the form of ( Concept::AdditiveOperators< GradientPixelType, GradientPixelType, ReferencePixelType > )

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::typedef

(

Concept::AdditiveAndAssignOperators< GradientPixelType, ReferencePixelType >

)

This class requires GradientReferenceAdditiveAndAssignOperatorsCheck in the form of ( Concept::AdditiveAndAssignOperators< GradientPixelType, ReferencePixelType > )

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::typedef

(

Concept::OStreamWritable< ReferencePixelType >

)

This class requires ReferenceOStreamWritableCheck in the form of ( Concept::OStreamWritable< ReferencePixelType > )

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::typedef

(

Concept::OStreamWritable< TensorPixelType >

)

This class requires TensorOStreamWritableCheck in the form of ( Concept::OStreamWritable< TensorPixelType > )

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

void itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::VerifyPreconditions ( )

overrideprotectedvirtual

Verifies that the process object has been configured correctly, that all required inputs are set, and needed parameters are set appropriately. If not valid an exceptions will be thrown.

This method is called before UpdateOutputInformation is propagated to the inputs.

The ProcessObject's implementation verifies that the NumberOfRequiredInputs are set and not null.

Reimplemented from itk::ProcessObject.

Member Data Documentation

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

CoefficientMatrixType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::m_BMatrix

private

Definition at line 311 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

TTensorPixelType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::m_BValue

private

LeBihan's b-value for normalizing tensors

Definition at line 326 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

GradientDirectionContainerType::Pointer itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::m_GradientDirectionContainer

private

container to hold gradient directions

Definition at line 314 of file itkDiffusionTensor3DReconstructionImageFilter.h.

Referenced by itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GetGradientDirection().

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

GradientImageTypeEnumeration itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::m_GradientImageTypeEnumeration

private

Gradient image was specified in a single image or in multiple images

Definition at line 329 of file itkDiffusionTensor3DReconstructionImageFilter.h.

Referenced by itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::SetReferenceImage().

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

bool itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::m_MaskImagePresent

private

Mask Image Present

Definition at line 332 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

unsigned int itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::m_NumberOfBaselineImages

private

Number of baseline images

Definition at line 320 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

unsigned int itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::m_NumberOfGradientDirections

private

Number of gradient measurements

Definition at line 317 of file itkDiffusionTensor3DReconstructionImageFilter.h.

Referenced by itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::GetGradientDirection().

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

TensorBasisMatrixType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::m_TensorBasis

private

Definition at line 309 of file itkDiffusionTensor3DReconstructionImageFilter.h.

template<typename TReferenceImagePixelType , typename TGradientImagePixelType = TReferenceImagePixelType, typename TTensorPixelType = double, typename TMaskImageType = Image<unsigned char, 3>>

ReferencePixelType itk::DiffusionTensor3DReconstructionImageFilter< TReferenceImagePixelType, TGradientImagePixelType, TTensorPixelType, TMaskImageType >::m_Threshold

private

Threshold on the reference image data

Definition at line 323 of file itkDiffusionTensor3DReconstructionImageFilter.h.

---

The documentation for this class was generated from the following file:

• itkDiffusionTensor3DReconstructionImageFilter.h