#include <itkKernelImageFilter.h>

Inheritance diagram for itk::FlatStructuringElement< VDimension >:

Collaboration diagram for itk::FlatStructuringElement< VDimension >:

Detailed Description

template<unsigned int VDimension>
class itk::FlatStructuringElement< VDimension >

A class to support a variety of flat structuring elements, including versions created by decomposition of lines.

FlatStructuringElement provides several static methods, which can be used to create a structuring element with a particular shape, size, etc. Currently, those methods enable the creation of the following structuring elements: ball, box, cross, annulus, or polygon. Polygons are available as fast approximations of balls using line decompositions. Boxes also use line decompositions.

"Flat" refers to binary as opposed to grayscale structuring elements. Flat structuring elements can be used for both binary and grayscale images.

A Neighborhood has an N-dimensional radius. The radius is defined separately for each dimension as the number of pixels that the neighborhood extends outward from the center pixel. For example, a 2D Neighborhood object with a radius of 2x3 has sides of length 5x7. However, in the case of balls and annuli, this definition is slightly different from the parametric definition of those objects. For example, an ellipse of radius 2x3 has a diameter of 4x6, not 5x7. To have a diameter of 5x7, the radius would need to increase by 0.5 in each dimension. Thus, the "radius" of the neighborhood and the "radius" of the object should be distinguished.

To accomplish this, the "ball" and "annulus" structuring elements have an optional flag called "radiusIsParametric" (off by default). Setting this flag to true will use the parametric definition of the object and will generate structuring elements with more accurate areas, which can be especially important when morphological operations are intended to remove or retain objects of particular sizes. When the mode is turned off (default), the radius is the same, but the object diameter is set to (radius*2)+1, which is the size of the neighborhood region. Thus, the original ball and annulus structuring elements have a systematic bias in the radius of +0.5 voxels in each dimension relative to the parametric definition of the radius. Thus, we recommend turning this mode on for more accurate structuring elements, but this mode is turned off by default for backward compatibility.

As an example, a 3D ball of radius 5 should have an area of 523. With this mode turned on, the number of "on" pixels is 515 (error 1.6%), but with it turned off, the area is 739 (error 41%). For a 3D annulus of radius 5 and thickness 2, the area should be 410. With this mode turned on, the area is 392 (error 4.5%), but when turned off it is 560 (error 36%). This same trend holds for balls and annuli of any radius or dimension. For more detailed experiments with this mode, please refer to the results of the test itkFlatStructuringElementTest.cxx or the wiki example.

Wiki Examples:

Examples:: SphinxExamples/src/Filtering/BinaryMathematicalMorphology/DilateABinaryImage/Code.cxx, SphinxExamples/src/Filtering/BinaryMathematicalMorphology/ErodeABinaryImage/Code.cxx, SphinxExamples/src/Filtering/LabelMap/ApplyMorphologicalClosingOnAllLabelObjects/Code.cxx, SphinxExamples/src/Filtering/LabelMap/ApplyMorphologicalClosingOnSpecificLabelObject/Code.cxx, SphinxExamples/src/Filtering/MathematicalMorphology/DilateAGrayscaleImage/Code.cxx, SphinxExamples/src/Filtering/MathematicalMorphology/ErodeAGrayscaleImage/Code.cxx, WikiExamples/Morphology/FlatStructuringElement.cxx, and WikiExamples/Morphology/FlatStructuringElementRadiusIsParametric.cxx.

Definition at line 26 of file itkKernelImageFilter.h.

Classes
struct	StructuringElementFacet

Public Types
typedef Superclass::ConstIterator	ConstIterator

typedef std::vector< LType >	DecompType

typedef itk::Image< PixelType, VDimension >	ImageType

typedef Superclass::Iterator	Iterator

typedef Vector< float, VDimension >	LType

typedef Superclass::OffsetType	OffsetType

typedef Superclass::PixelType	PixelType

typedef Superclass::RadiusType	RadiusType

typedef FlatStructuringElement < VDimension >	Self

typedef Superclass::SizeType	SizeType

typedef Superclass::SliceIteratorType	SliceIteratorType

typedef Neighborhood< bool, VDimension >	Superclass

Public Types inherited from itk::Neighborhood< bool, VDimension >
typedef NeighborhoodAllocator < bool >	AllocatorType

typedef AllocatorType::const_iterator	ConstIterator

typedef unsigned int	DimensionValueType

typedef AllocatorType::iterator	Iterator

typedef SizeValueType	NeighborIndexType

typedef Offset< VDimension >	OffsetType

typedef bool	PixelType

typedef Neighborhood	Self

typedef SizeType::SizeValueType	SizeValueType

typedef SliceIterator< bool, Self >	SliceIteratorType

Public Member Functions
bool	CheckParallel (LType NewVec) const

void	ComputeBufferFromLines ()

	FlatStructuringElement ()

virtual	~FlatStructuringElement ()


bool	GetDecomposable () const

void	SetDecomposable (bool v)


const DecompType &	GetLines () const

void	AddLine (LType l)


bool	GetRadiusIsParametric () const

void	SetRadiusIsParametric (bool flag)

virtual void	RadiusIsParametricOn ()

virtual void	RadiusIsParametricOff ()

Public Member Functions inherited from itk::Neighborhood< bool, VDimension >
NeighborIndexType	GetCenterNeighborhoodIndex () const

bool	GetCenterValue () const

virtual NeighborIndexType	GetNeighborhoodIndex (const OffsetType &) const

OffsetType	GetOffset (NeighborIndexType i) const

const SizeType	GetRadius () const

SizeValueType	GetRadius (DimensionValueType n) const

SizeValueType	GetSize (DimensionValueType n) const

SizeType	GetSize () const

std::slice	GetSlice (unsigned int) const

OffsetValueType	GetStride (DimensionValueType axis) const

	itkTypeMacroNoParent (Neighborhood)

	Neighborhood (const Self &other)

bool	operator!= (const Self &other) const

Self &	operator= (const Self &other)

bool	operator== (const Self &other) const

void	Print (std::ostream &os) const

void	SetRadius (const SizeType &)

void	SetRadius (const SizeValueType)

NeighborIndexType	Size () const

virtual	~Neighborhood ()

	Neighborhood ()

Iterator	End ()

ConstIterator	End () const

Iterator	Begin ()

ConstIterator	Begin () const

bool &	operator[] (NeighborIndexType i)

const bool &	operator[] (NeighborIndexType i) const

bool &	GetElement (NeighborIndexType i)

bool &	operator[] (const OffsetType &o)

const bool &	operator[] (const OffsetType &o) const

void	SetRadius (const SizeValueType *rad)

AllocatorType &	GetBufferReference ()

const AllocatorType &	GetBufferReference () const

Static Public Member Functions
static Self	Annulus (RadiusType radius, unsigned int thickness=1, bool includeCenter=false, bool radiusIsParametric=false)

static Self	Ball (RadiusType radius, bool radiusIsParametric=false)

static Self	Box (RadiusType radius)

static Self	Cross (RadiusType radius)

static Self	FromImage (const ImageType *image)

static Self	Polygon (RadiusType radius, unsigned lines)

Static Public Attributes
static const unsigned int	NeighborhoodDimension = VDimension

Static Public Attributes inherited from itk::Neighborhood< bool, VDimension >
static const unsigned int	NeighborhoodDimension

Protected Member Functions
void	PrintSelf (std::ostream &os, Indent indent) const override

Protected Member Functions inherited from itk::Neighborhood< bool, VDimension >
virtual void	Allocate (NeighborIndexType i)

virtual void	ComputeNeighborhoodOffsetTable ()

virtual void	ComputeNeighborhoodStrideTable ()

void	SetSize ()

Private Types
typedef StructuringElementFacet < VDimension >	FacetType

typedef StructuringElementFacet< 3 >	FacetType3

typedef Vector< float, 2 >	LType2

typedef Vector< float, 3 >	LType3

Static Private Member Functions
static RadiusType	CheckImageSize (const ImageType *image)

template<typename TStructuringElement , typename TRadius >
static void	GeneratePolygon (TStructuringElement &res, TRadius radius, unsigned lines)

static void	GeneratePolygon (itk::FlatStructuringElement< 2 > &res, itk::Size< 2 > radius, unsigned lines)

static void	GeneratePolygon (itk::FlatStructuringElement< 3 > &res, itk::Size< 3 > radius, unsigned lines)

Private Attributes
bool	m_Decomposable

DecompType	m_Lines

bool	m_RadiusIsParametric

Additional Inherited Members
Public Attributes inherited from itk::Neighborhood< bool, VDimension >
typedef::itk::Size< VDimension >	RadiusType

typedef::itk::Size< VDimension >	SizeType

Member Typedef Documentation

template<unsigned int VDimension>

typedef Superclass::ConstIterator itk::FlatStructuringElement< VDimension >::ConstIterator

Definition at line 103 of file itkFlatStructuringElement.h.

template<unsigned int VDimension>

typedef std::vector< LType > itk::FlatStructuringElement< VDimension >::DecompType

Definition at line 119 of file itkFlatStructuringElement.h.

template<unsigned int VDimension>

typedef StructuringElementFacet< VDimension > itk::FlatStructuringElement< VDimension >::FacetType

private

Definition at line 228 of file itkFlatStructuringElement.h.

template<unsigned int VDimension>

typedef StructuringElementFacet< 3 > itk::FlatStructuringElement< VDimension >::FacetType3

private

Definition at line 238 of file itkFlatStructuringElement.h.

template<unsigned int VDimension>

typedef itk::Image< PixelType, VDimension > itk::FlatStructuringElement< VDimension >::ImageType

ImageType used in constructors

Definition at line 122 of file itkFlatStructuringElement.h.

template<unsigned int VDimension>

typedef Superclass::Iterator itk::FlatStructuringElement< VDimension >::Iterator

Iterator typedef support. Note the naming is intentional, i.e., AllocatorType::iterator and AllocatorType::const_iterator, because the allocator may be a vnl object or other type, which uses this form.

Definition at line 102 of file itkFlatStructuringElement.h.

template<unsigned int VDimension>

typedef Vector< float, VDimension > itk::FlatStructuringElement< VDimension >::LType

Definition at line 118 of file itkFlatStructuringElement.h.

template<unsigned int VDimension>

typedef Vector< float, 2 > itk::FlatStructuringElement< VDimension >::LType2

private

Definition at line 235 of file itkFlatStructuringElement.h.

template<unsigned int VDimension>

typedef Vector< float, 3 > itk::FlatStructuringElement< VDimension >::LType3

private

Definition at line 237 of file itkFlatStructuringElement.h.

template<unsigned int VDimension>

typedef Superclass::OffsetType itk::FlatStructuringElement< VDimension >::OffsetType

Definition at line 107 of file itkFlatStructuringElement.h.

template<unsigned int VDimension>

typedef Superclass::PixelType itk::FlatStructuringElement< VDimension >::PixelType

External support for pixel type.

Definition at line 97 of file itkFlatStructuringElement.h.

template<unsigned int VDimension>

typedef Superclass::RadiusType itk::FlatStructuringElement< VDimension >::RadiusType

Radius typedef support.

Definition at line 110 of file itkFlatStructuringElement.h.

template<unsigned int VDimension>

typedef FlatStructuringElement< VDimension > itk::FlatStructuringElement< VDimension >::Self

Standard class typedefs.

Definition at line 93 of file itkFlatStructuringElement.h.

template<unsigned int VDimension>

typedef Superclass::SizeType itk::FlatStructuringElement< VDimension >::SizeType

Size and value typedef support.

Definition at line 106 of file itkFlatStructuringElement.h.

template<unsigned int VDimension>

typedef Superclass::SliceIteratorType itk::FlatStructuringElement< VDimension >::SliceIteratorType

External slice iterator type typedef support.

Definition at line 113 of file itkFlatStructuringElement.h.

template<unsigned int VDimension>

typedef Neighborhood< bool, VDimension > itk::FlatStructuringElement< VDimension >::Superclass

Definition at line 94 of file itkFlatStructuringElement.h.

Constructor & Destructor Documentation

template<unsigned int VDimension>

virtual itk::FlatStructuringElement< VDimension >::~FlatStructuringElement ( )

inlinevirtual

Default destructor.

Definition at line 125 of file itkFlatStructuringElement.h.

template<unsigned int VDimension>

itk::FlatStructuringElement< VDimension >::FlatStructuringElement ( )

inline

Default constructor.

Definition at line 128 of file itkFlatStructuringElement.h.

References itk::FlatStructuringElement< VDimension >::m_Decomposable, and itk::FlatStructuringElement< VDimension >::m_RadiusIsParametric.

Member Function Documentation

template<unsigned int VDimension>

void itk::FlatStructuringElement< VDimension >::AddLine ( LType l )

inline

Return the lines associated with the structuring element

Definition at line 181 of file itkFlatStructuringElement.h.

References itk::FlatStructuringElement< VDimension >::m_Lines.

template<unsigned int VDimension>

static Self itk::FlatStructuringElement< VDimension >::Annulus	(	RadiusType	radius,
		unsigned int	thickness = `1`,
		bool	includeCenter = `false`,
		bool	radiusIsParametric = `false`
	)

static

Create an annulus structuring element

template<unsigned int VDimension>

static Self itk::FlatStructuringElement< VDimension >::Ball	(	RadiusType	radius,
		bool	radiusIsParametric = `false`
	)

static

Create a ball structuring element

template<unsigned int VDimension>

static Self itk::FlatStructuringElement< VDimension >::Box ( RadiusType radius )

static

Various constructors Create a box structuring element. The structuring element is is decomposable.

Referenced by itk::KernelImageFilter< TImage, TImage, TKernel >::MakeKernel().

template<unsigned int VDimension>

static RadiusType itk::FlatStructuringElement< VDimension >::CheckImageSize ( const ImageType * image )

staticprivate

Check for correct odd size image. Return image size. Called in constructor FromImage.

template<unsigned int VDimension>

bool itk::FlatStructuringElement< VDimension >::CheckParallel ( LType NewVec ) const

template<unsigned int VDimension>

void itk::FlatStructuringElement< VDimension >::ComputeBufferFromLines ( )

Fill the buffer of the structuring element based on the lines associated to the structuring element

template<unsigned int VDimension>

static Self itk::FlatStructuringElement< VDimension >::Cross ( RadiusType radius )

static

Create a cross structuring element

template<unsigned int VDimension>

static Self itk::FlatStructuringElement< VDimension >::FromImage ( const ImageType * image )

static

Create a FlatStructureElement from a bool image. Image must be odd in all dimensions.

template<unsigned int VDimension>

template<typename TStructuringElement , typename TRadius >

static void itk::FlatStructuringElement< VDimension >::GeneratePolygon	(	TStructuringElement &	res,
		TRadius	radius,
		unsigned	lines
	)

staticprivate

template<unsigned int VDimension>

static void itk::FlatStructuringElement< VDimension >::GeneratePolygon	(	itk::FlatStructuringElement< 2 > &	res,
		itk::Size< 2 >	radius,
		unsigned	lines
	)

staticprivate

template<unsigned int VDimension>

static void itk::FlatStructuringElement< VDimension >::GeneratePolygon	(	itk::FlatStructuringElement< 3 > &	res,
		itk::Size< 3 >	radius,
		unsigned	lines
	)

staticprivate

template<unsigned int VDimension>

bool itk::FlatStructuringElement< VDimension >::GetDecomposable ( ) const

inline

Returns whether the structuring element is decomposable or not. If the structuring is decomposable, the set of lines associated with the structuring may be used by an algorithm instead of the standard buffer.

Definition at line 166 of file itkFlatStructuringElement.h.

References itk::FlatStructuringElement< VDimension >::m_Decomposable.

Referenced by itk::KernelImageFilter< TImage, TImage, TKernel >::MakeKernel().

template<unsigned int VDimension>

const DecompType& itk::FlatStructuringElement< VDimension >::GetLines ( ) const

inline

Return the lines associated with the structuring element

Definition at line 177 of file itkFlatStructuringElement.h.

References itk::FlatStructuringElement< VDimension >::m_Lines.

template<unsigned int VDimension>

bool itk::FlatStructuringElement< VDimension >::GetRadiusIsParametric ( ) const

inline

The RadiusIsParametric mode ensures that the area of the foreground corresponds to the radius that was specified. This defaults to "off" for backward compatibility.

Definition at line 200 of file itkFlatStructuringElement.h.

References itk::FlatStructuringElement< VDimension >::m_RadiusIsParametric.

template<unsigned int VDimension>

static Self itk::FlatStructuringElement< VDimension >::Polygon	(	RadiusType	radius,
		unsigned	lines
	)

static

Create a polygon structuring element. The structuring element is is decomposable. lines is the number of elements in the decomposition

template<unsigned int VDimension>

void itk::FlatStructuringElement< VDimension >::PrintSelf	(	std::ostream &	,
		Indent
	)		const

overrideprotectedvirtual

Standard itk object method.

Reimplemented from itk::Neighborhood< bool, VDimension >.

template<unsigned int VDimension>

virtual void itk::FlatStructuringElement< VDimension >::RadiusIsParametricOff ( )

virtual

The RadiusIsParametric mode ensures that the area of the foreground corresponds to the radius that was specified. This defaults to "off" for backward compatibility.

template<unsigned int VDimension>

virtual void itk::FlatStructuringElement< VDimension >::RadiusIsParametricOn ( )

virtual

The RadiusIsParametric mode ensures that the area of the foreground corresponds to the radius that was specified. This defaults to "off" for backward compatibility.

template<unsigned int VDimension>

void itk::FlatStructuringElement< VDimension >::SetDecomposable ( bool v )

inline

Returns whether the structuring element is decomposable or not. If the structuring is decomposable, the set of lines associated with the structuring may be used by an algorithm instead of the standard buffer.

Definition at line 170 of file itkFlatStructuringElement.h.

References itk::FlatStructuringElement< VDimension >::m_Decomposable.

template<unsigned int VDimension>

void itk::FlatStructuringElement< VDimension >::SetRadiusIsParametric ( bool flag )

inline

The RadiusIsParametric mode ensures that the area of the foreground corresponds to the radius that was specified. This defaults to "off" for backward compatibility.

Definition at line 204 of file itkFlatStructuringElement.h.

References itk::FlatStructuringElement< VDimension >::m_RadiusIsParametric.