itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage > Class Template Reference

#include <itkLesionSegmentationImageFilter8.h>

Inheritance diagram for itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >:

Collaboration diagram for itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >:

Detailed Description

template<class TInputImage, class TOutputImage>
class itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >

Definition at line 45 of file itkLesionSegmentationImageFilter8.h.

Public Types
typedef CannyEdgesFeatureGenerator < ImageDimension >	CannyEdgesFeatureGeneratorType
typedef SmartPointer< const Self >	ConstPointer
typedef TInputImage::IndexType	IndexType
typedef TInputImage::PixelType	InputImagePixelType
typedef TInputImage	InputImageType
typedef TOutputImage::PixelType	OutputImagePixelType
typedef TOutputImage::RegionType	OutputImageRegionType
typedef TOutputImage	OutputImageType
typedef SmartPointer< Self >	Pointer
typedef SeedSpatialObjectType::PointListType	PointListType
typedef TOutputImage::RegionType	RegionType
typedef itk::LandmarkSpatialObject < ImageDimension >	SeedSpatialObjectType
typedef LesionSegmentationImageFilter8	Self
typedef CannyEdgesFeatureGeneratorType::SigmaArrayType	SigmaArrayType
typedef InputImageType::SpacingType	SpacingType
typedef ImageToImageFilter < TInputImage, TOutputImage >	Superclass
Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const Self >	ConstPointer
typedef InputImageType::ConstPointer	InputImageConstPointer
typedef InputImageType::PixelType	InputImagePixelType
typedef InputImageType::Pointer	InputImagePointer
typedef InputImageType::RegionType	InputImageRegionType
typedef TInputImage	InputImageType
typedef Superclass::OutputImagePixelType	OutputImagePixelType
typedef Superclass::OutputImageRegionType	OutputImageRegionType
typedef SmartPointer< Self >	Pointer
typedef ImageToImageFilter	Self
typedef ImageSource< TOutputImage >	Superclass
Public Types inherited from itk::ImageSource< TOutputImage >
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::DataObjectIdentifierType	DataObjectIdentifierType
typedef DataObject::Pointer	DataObjectPointer
typedef Superclass::DataObjectPointerArraySizeType	DataObjectPointerArraySizeType
typedef OutputImageType::PixelType	OutputImagePixelType
typedef OutputImageType::Pointer	OutputImagePointer
typedef OutputImageType::RegionType	OutputImageRegionType
typedef TOutputImage	OutputImageType
typedef SmartPointer< Self >	Pointer
typedef ImageSource	Self
typedef ProcessObject	Superclass
Public Types inherited from itk::ProcessObject
typedef SmartPointer< const Self >	ConstPointer
typedef DataObject::DataObjectIdentifierType	DataObjectIdentifierType
typedef DataObject::Pointer	DataObjectPointer
typedef std::vector < DataObjectPointer >	DataObjectPointerArray
typedef DataObjectPointerArray::size_type	DataObjectPointerArraySizeType
typedef std::vector < DataObjectIdentifierType >	NameArray
typedef SmartPointer< Self >	Pointer
typedef ProcessObject	Self
typedef Object	Superclass
Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef Object	Self
typedef LightObject	Superclass
Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef LightObject	Self

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother () const
virtual void	GenerateInputRequestedRegion () throw (InvalidRequestedRegionError)
virtual const char *	GetNameOfClass () const
PointListType	GetSeeds ()
const char *	GetStatusMessage () const
void	ProgressUpdate (Object *caller, const EventObject &event)
virtual void	SetAbortGenerateData (const bool)
void	SetSeeds (PointListType p)
virtual void	SetSigma (SigmaArrayType sigmas)
	typedef (Concept::HasNumericTraits< InputImagePixelType >) InputHasNumericTraitsCheck
	typedef (Concept::HasNumericTraits< OutputImagePixelType >) OutputHasNumericTraitsCheck
	typedef (Concept::SameDimension< ImageDimension, OutputImageDimension >) SameDimensionCheck
	typedef (Concept::IsFloatingPoint< OutputImagePixelType >) OutputIsFloatingPointCheck
virtual void	SetRegionOfInterest (RegionType _arg)
virtual RegionType	GetRegionOfInterest ()
virtual void	SetSigmoidBeta (double _arg)
virtual double	GetSigmoidBeta ()
virtual void	SetResampleThickSliceData (bool _arg)
virtual bool	GetResampleThickSliceData ()
virtual void	ResampleThickSliceDataOn ()
virtual void	ResampleThickSliceDataOff ()
virtual void	SetAnisotropyThreshold (double _arg)
virtual double	GetAnisotropyThreshold ()
virtual void	SetUseVesselEnhancingDiffusion (bool)
virtual void	UseVesselEnhancingDiffusionOn ()
virtual void	UseVesselEnhancingDiffusionOff ()
Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
const InputImageType *	GetInput () const
const InputImageType *	GetInput (unsigned int idx) const
virtual void	PopBackInput () override
virtual void	PopFrontInput () override
virtual void	PushBackInput (const InputImageType *image)
virtual void	PushFrontInput (const InputImageType *image)
virtual void	SetInput (const InputImageType *image)
virtual void	SetInput (unsigned int, const TInputImage *image)
virtual void	SetCoordinateTolerance (double _arg)
virtual double	GetCoordinateTolerance () const
virtual void	SetDirectionTolerance (double _arg)
virtual double	GetDirectionTolerance () const
Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageType *	GetOutput (unsigned int idx)
virtual void	GraftNthOutput (unsigned int idx, DataObject *output)
virtual void	GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
OutputImageType *	GetOutput ()
const OutputImageType *	GetOutput () const
virtual void	GraftOutput (DataObject *output)
virtual ProcessObject::DataObjectPointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override
virtual ProcessObject::DataObjectPointer	MakeOutput (const ProcessObject::DataObjectIdentifierType &) override
Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()
virtual void	AbortGenerateDataOn ()
virtual void	EnlargeOutputRequestedRegion (DataObject *)
virtual const bool &	GetAbortGenerateData () const
DataObjectPointerArray	GetIndexedInputs ()
DataObjectPointerArray	GetIndexedOutputs ()
NameArray	GetInputNames () const
DataObjectPointerArray	GetInputs ()
MultiThreader *	GetMultiThreader () const
DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const
DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const
DataObjectPointerArraySizeType	GetNumberOfInputs () const
DataObjectPointerArraySizeType	GetNumberOfOutputs () const
virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const
NameArray	GetOutputNames () const
DataObjectPointerArray	GetOutputs ()
virtual const float &	GetProgress () const
NameArray	GetRequiredInputNames () const
bool	HasInput (const DataObjectIdentifierType &key) const
bool	HasOutput (const DataObjectIdentifierType &key) const
virtual void	PrepareOutputs ()
virtual void	PropagateRequestedRegion (DataObject *output)
virtual void	ResetPipeline ()
virtual void	Update ()
virtual void	UpdateLargestPossibleRegion ()
virtual void	UpdateOutputData (DataObject *output)
virtual void	UpdateOutputInformation ()
void	UpdateProgress (float progress)
void	SetProgress (float progress)
virtual void	SetReleaseDataFlag (bool flag)
virtual bool	GetReleaseDataFlag () const
void	ReleaseDataFlagOn ()
void	ReleaseDataFlagOff ()
virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual const bool &	GetReleaseDataBeforeUpdateFlag () const
virtual void	ReleaseDataBeforeUpdateFlagOn ()
virtual void	ReleaseDataBeforeUpdateFlagOff ()
virtual void	SetNumberOfThreads (ThreadIdType _arg)
virtual const ThreadIdType &	GetNumberOfThreads () const
Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
virtual void	DebugOff () const
virtual void	DebugOn () const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
MetaDataDictionary &	GetMetaDataDictionary ()
const MetaDataDictionary &	GetMetaDataDictionary () const
virtual ModifiedTimeType	GetMTime () const
virtual const TimeStamp &	GetTimeStamp () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
virtual void	Register () const override
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
void	SetDebug (bool debugFlag) const
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetReferenceCount (int) override
virtual void	UnRegister () const noexceptoverride
virtual void	SetObjectName (std::string _arg)
virtual const std::string &	GetObjectName () const
Public Member Functions inherited from itk::LightObject
virtual void	Delete ()
virtual int	GetReferenceCount () const
	itkCloneMacro (Self)
void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOff ()
static void	GlobalWarningDisplayOn ()
static Pointer	New ()
static void	SetGlobalWarningDisplay (bool flag)
Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()
static Pointer	New ()

Static Public Attributes
static const unsigned int	ImageDimension = TInputImage::ImageDimension
static const unsigned int	OutputImageDimension = TOutputImage::ImageDimension
Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
static const unsigned int	InputImageDimension = TInputImage::ImageDimension
static const unsigned int	OutputImageDimension = TOutputImage::ImageDimension
Static Public Attributes inherited from itk::ImageSource< TOutputImage >
static const unsigned int	OutputImageDimension = TOutputImage::ImageDimension

Protected Types
typedef MemberCommand< Self >	CommandType
typedef RegionOfInterestImageFilter < InputImageType, InputImageType >	CropFilterType
typedef MinimumFeatureAggregator < ImageDimension >	FeatureAggregatorType
typedef ImageSpatialObject < ImageDimension, InputImagePixelType >	InputImageSpatialObjectType
typedef IsotropicResamplerImageFilter < InputImageType, InputImageType >	IsotropicResamplerType
typedef LesionSegmentationMethod < ImageDimension >	LesionSegmentationMethodType
typedef LungWallFeatureGenerator < ImageDimension >	LungWallGeneratorType
typedef SegmentationModuleType::OutputSpatialObjectType	OutputSpatialObjectType
typedef FastMarchingAndGeodesicActiveContourLevelSetSegmentationModule < ImageDimension >	SegmentationModuleType
typedef SigmoidFeatureGenerator < ImageDimension >	SigmoidFeatureGeneratorType
typedef RegionType::SizeType	SizeType
typedef SizeType::SizeValueType	SizeValueType
typedef SegmentationModuleType::SpatialObjectType	SpatialObjectType
typedef SatoVesselnessSigmoidFeatureGenerator < ImageDimension >	VesselnessGeneratorType
Protected Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension) >	InputToOutputRegionCopierType
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension) >	OutputToInputRegionCopierType

Protected Member Functions
void	GenerateData ()
virtual void	GenerateOutputInformation ()
	LesionSegmentationImageFilter8 ()
	LesionSegmentationImageFilter8 (const Self &)
void	PrintSelf (std::ostream &os, Indent indent) const
Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
	ImageToImageFilter ()
virtual void	VerifyInputInformation () override
	~ImageToImageFilter ()
void	PushBackInput (const DataObject *input) override
void	PushFrontInput (const DataObject *input) override
Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void	AfterThreadedGenerateData ()
virtual void	AllocateOutputs ()
virtual void	BeforeThreadedGenerateData ()
virtual const ImageRegionSplitterBase *	GetImageRegionSplitter () const
	ImageSource ()
virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)
virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
virtual	~ImageSource ()
Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)
virtual void	AddOutput (DataObject *output)
bool	AddRequiredInputName (const DataObjectIdentifierType &)
bool	AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
virtual void	CacheInputReleaseDataFlags ()
virtual void	GenerateOutputRequestedRegion (DataObject *output)
DataObject *	GetInput (const DataObjectIdentifierType &key)
const DataObject *	GetInput (const DataObjectIdentifierType &key) const
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs () const
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs () const
bool	IsIndexedInputName (const DataObjectIdentifierType &) const
bool	IsIndexedOutputName (const DataObjectIdentifierType &) const
bool	IsRequiredInputName (const DataObjectIdentifierType &) const
	itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
	itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
	itkLegacyMacro (virtual void RemoveInput(DataObject *input))
	itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
DataObjectPointerArraySizeType	MakeIndexFromInputName (const DataObjectIdentifierType &name) const
DataObjectPointerArraySizeType	MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
DataObjectIdentifierType	MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
DataObjectIdentifierType	MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
	ProcessObject ()
virtual void	PropagateResetPipeline ()
virtual void	ReleaseInputs ()
virtual void	RemoveInput (const DataObjectIdentifierType &key)
virtual void	RemoveInput (DataObjectPointerArraySizeType)
virtual void	RemoveOutput (const DataObjectIdentifierType &key)
virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)
bool	RemoveRequiredInputName (const DataObjectIdentifierType &)
virtual void	RestoreInputReleaseDataFlags ()
virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void	SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
virtual void	SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
virtual void	SetOutput (const DataObjectIdentifierType &key, DataObject *output)
virtual void	SetPrimaryInput (DataObject *input)
virtual void	SetPrimaryOutput (DataObject *output)
void	SetRequiredInputNames (const NameArray &)
virtual void	VerifyPreconditions ()
	~ProcessObject ()
DataObject *	GetInput (DataObjectPointerArraySizeType idx)
const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryInput ()
const DataObject *	GetPrimaryInput () const
virtual void	SetPrimaryInputName (const DataObjectIdentifierType &key)
virtual const char *	GetPrimaryInputName (void) const
DataObject *	GetOutput (const DataObjectIdentifierType &key)
const DataObject *	GetOutput (const DataObjectIdentifierType &key) const
virtual void	SetPrimaryOutputName (const DataObjectIdentifierType &key)
virtual const char *	GetPrimaryOutputName (void) const
DataObject *	GetOutput (DataObjectPointerArraySizeType idx)
const DataObject *	GetOutput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryOutput ()
const DataObject *	GetPrimaryOutput () const
Protected Member Functions inherited from itk::Object
	Object ()
bool	PrintObservers (std::ostream &os, Indent indent) const
virtual void	SetTimeStamp (const TimeStamp &time)
virtual	~Object ()
Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()

Private Member Functions
virtual	~LesionSegmentationImageFilter8 ()

Private Attributes
double	m_AnisotropyThreshold
CannyEdgesFeatureGeneratorType::Pointer	m_CannyEdgesFeatureGenerator
CommandType::Pointer	m_CommandObserver
CropFilterType::Pointer	m_CropFilter
double	m_FastMarchingDistanceFromSeeds
double	m_FastMarchingStoppingTime
FeatureAggregatorType::Pointer	m_FeatureAggregator
InputImageSpatialObjectType::Pointer	m_InputSpatialObject
IsotropicResamplerType::Pointer	m_IsotropicResampler
LesionSegmentationMethodType::Pointer	m_LesionSegmentationMethod
LungWallGeneratorType::Pointer	m_LungWallFeatureGenerator
RegionType	m_RegionOfInterest
bool	m_ResampleThickSliceData
SeedSpatialObjectType::PointListType	m_Seeds
SegmentationModuleType::Pointer	m_SegmentationModule
double	m_SigmoidBeta
SigmoidFeatureGeneratorType::Pointer	m_SigmoidFeatureGenerator
std::string	m_StatusMessage
bool	m_UserSpecifiedSigmas
VesselnessGeneratorType::Pointer	m_VesselnessFeatureGenerator

Additional Inherited Members
Static Protected Member Functions inherited from itk::ImageSource< TOutputImage >
static const ImageRegionSplitterBase *	GetGlobalDefaultSplitter ()
static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)
Protected Attributes inherited from itk::ProcessObject
TimeStamp	m_OutputInformationMTime
bool	m_Updating
Protected Attributes inherited from itk::LightObject
AtomicInt< int >	m_ReferenceCount

Member Typedef Documentation

template<class TInputImage , class TOutputImage >

typedef CannyEdgesFeatureGenerator< ImageDimension > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::CannyEdgesFeatureGeneratorType

Definition at line 84 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef MemberCommand< Self > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::CommandType

protected

Definition at line 181 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef SmartPointer<const Self> itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::ConstPointer

Definition at line 59 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef RegionOfInterestImageFilter< InputImageType, InputImageType > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::CropFilterType

protected

Definition at line 174 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef MinimumFeatureAggregator< ImageDimension > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::FeatureAggregatorType

protected

Definition at line 172 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef TInputImage::IndexType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::IndexType

Definition at line 64 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef TInputImage::PixelType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::InputImagePixelType

Define pixel types.

Definition at line 62 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef ImageSpatialObject< ImageDimension, InputImagePixelType > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::InputImageSpatialObjectType

protected

Definition at line 177 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef TInputImage itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::InputImageType

Image typedef support

Definition at line 54 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef IsotropicResamplerImageFilter< InputImageType, InputImageType > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::IsotropicResamplerType

protected

Definition at line 178 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef LesionSegmentationMethod< ImageDimension > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::LesionSegmentationMethodType

protected

Definition at line 168 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef LungWallFeatureGenerator< ImageDimension > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::LungWallGeneratorType

protected

Definition at line 170 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef TOutputImage::PixelType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::OutputImagePixelType

Definition at line 63 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef TOutputImage::RegionType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::OutputImageRegionType

Typedef to describe the output image region type.

Definition at line 68 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef TOutputImage itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::OutputImageType

Definition at line 55 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef SegmentationModuleType::OutputSpatialObjectType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::OutputSpatialObjectType

protected

Definition at line 176 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef SmartPointer<Self> itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::Pointer

SmartPointer typedef support

Definition at line 58 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef SeedSpatialObjectType::PointListType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::PointListType

Definition at line 138 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef TOutputImage::RegionType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::RegionType

Definition at line 72 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef itk::LandmarkSpatialObject< ImageDimension > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SeedSpatialObjectType

Definition at line 134 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef FastMarchingAndGeodesicActiveContourLevelSetSegmentationModule< ImageDimension > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SegmentationModuleType

protected

Definition at line 173 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef LesionSegmentationImageFilter8 itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::Self

Standard "Self" & Superclass typedef.

Definition at line 50 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef CannyEdgesFeatureGeneratorType::SigmaArrayType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SigmaArrayType

Definition at line 85 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef SigmoidFeatureGenerator< ImageDimension > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SigmoidFeatureGeneratorType

protected

Definition at line 171 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef RegionType::SizeType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SizeType

protected

Definition at line 179 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef SizeType::SizeValueType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SizeValueType

protected

Definition at line 180 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef InputImageType::SpacingType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SpacingType

Definition at line 65 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef SegmentationModuleType::SpatialObjectType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SpatialObjectType

protected

Definition at line 175 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef ImageToImageFilter<TInputImage, TOutputImage> itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::Superclass

Definition at line 51 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

typedef SatoVesselnessSigmoidFeatureGenerator< ImageDimension > itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::VesselnessGeneratorType

protected

Definition at line 169 of file itkLesionSegmentationImageFilter8.h.

Constructor & Destructor Documentation

template<class TInputImage , class TOutputImage >

itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::LesionSegmentationImageFilter8 ( )

protected

template<class TInputImage , class TOutputImage >

itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::LesionSegmentationImageFilter8 ( const Self &  )

inlineprotected

Definition at line 161 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

virtual itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::~LesionSegmentationImageFilter8 ( )

inlineprivatevirtual

Definition at line 185 of file itkLesionSegmentationImageFilter8.h.

Member Function Documentation

template<class TInputImage , class TOutputImage >

virtual::itk::LightObject::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::CreateAnother ( ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<class TInputImage , class TOutputImage >

void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GenerateData ( )

protectedvirtual

A version of GenerateData() specific for image processing filters. This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling ThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter an be threaded, it should NOT provide a GenerateData() method but should provide a ThreadedGenerateData() instead.

See Also

ThreadedGenerateData()

Reimplemented from itk::ImageSource< TOutputImage >.

template<class TInputImage , class TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GenerateInputRequestedRegion ( ) throw ( InvalidRequestedRegionError )

virtual

What is the input requested region that is required to produce the output requested region? The base assumption for image processing filters is that the input requested region can be set to match the output requested region. If a filter requires more input (for instance a filter that uses neighborhoods needs more input than output to avoid introducing artificial boundary conditions) or less input (for instance a magnify filter) will have to override this method. In doing so, it should call its superclass' implementation as its first step. Note that imaging filters operate differently than the classes to this point in the class hierarchy. Up till now, the base assumption has been that the largest possible region will be requested of the input.

This implementation of GenerateInputRequestedRegion() only processes the inputs that are a subclass of the ImageBase<InputImageDimension>. If an input is another type of DataObject (including an Image of a different dimension), they are skipped by this method. The subclasses of ImageToImageFilter are responsible for providing an implementation of GenerateInputRequestedRegion() when there are multiple inputs of different types.

See Also

ProcessObject::GenerateInputRequestedRegion(), ImageSource::GenerateInputRequestedRegion()

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<class TInputImage , class TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GenerateOutputInformation ( )

protectedvirtual

Generate the information describing the output data. The default implementation of this method will copy information from the input to the output. A filter may override this method if its output will have different information than its input. For instance, a filter that shrinks an image will need to provide an implementation for this method that changes the spacing of the pixels. Such filters should call their superclass' implementation of this method prior to changing the information values they need (i.e. GenerateOutputInformation() should call Superclass::GenerateOutputInformation() prior to changing the information.

Reimplemented from itk::ProcessObject.

template<class TInputImage , class TOutputImage >

virtual double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetAnisotropyThreshold ( )

virtual

If ResampleThickSliceData is ON, set the maximum anisotropy. Defauls to twice the minimum spacing of the data. That will mean that 0.7 x 0.7 x 1.25 mm CT data will not be resampled. However 0.7 x 0.7 x 2.5 mm CT data will be resampled to 0.7 x 0.7 x 1.25 mm thick slices. Values less than 1.0 result in supersampling of the data. A value of 1 results in Isotropic resampling of the data.

template<class TInputImage , class TOutputImage >

virtual const char* itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<class TInputImage , class TOutputImage >

virtual RegionType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetRegionOfInterest ( )

virtual

End concept checking Set the ROI

template<class TInputImage , class TOutputImage >

virtual bool itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetResampleThickSliceData ( )

virtual

Turn On/Off isotropic resampling prior to running the segmentation

template<class TInputImage , class TOutputImage >

PointListType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetSeeds ( )

inline

Definition at line 141 of file itkLesionSegmentationImageFilter8.h.

References itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_Seeds.

template<class TInputImage , class TOutputImage >

virtual double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetSigmoidBeta ( )

virtual

Set the beta for the sigmoid intensity feature

template<class TInputImage , class TOutputImage >

const char* itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetStatusMessage ( ) const

inline

Definition at line 147 of file itkLesionSegmentationImageFilter8.h.

References itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_StatusMessage.

template<class TInputImage , class TOutputImage >

static Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::New ( )

static

Method for creation through the object factory.

template<class TInputImage , class TOutputImage >

void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

protectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

template<class TInputImage , class TOutputImage >

void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::ProgressUpdate	(	Object *	caller,
		const EventObject &	event
	)

Report progress

template<class TInputImage , class TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::ResampleThickSliceDataOff ( )

virtual

Turn On/Off isotropic resampling prior to running the segmentation

template<class TInputImage , class TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::ResampleThickSliceDataOn ( )

virtual

Turn On/Off isotropic resampling prior to running the segmentation

template<class TInputImage , class TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetAbortGenerateData ( const bool  )

virtual

Override the superclass implementation so as to set the flag on all the filters within our lesion segmentation pipeline

Reimplemented from itk::ProcessObject.

template<class TInputImage , class TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetAnisotropyThreshold ( double  _arg )

virtual

If ResampleThickSliceData is ON, set the maximum anisotropy. Defauls to twice the minimum spacing of the data. That will mean that 0.7 x 0.7 x 1.25 mm CT data will not be resampled. However 0.7 x 0.7 x 2.5 mm CT data will be resampled to 0.7 x 0.7 x 1.25 mm thick slices. Values less than 1.0 result in supersampling of the data. A value of 1 results in Isotropic resampling of the data.

template<class TInputImage , class TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetRegionOfInterest ( RegionType  _arg )

virtual

End concept checking Set the ROI

template<class TInputImage , class TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetResampleThickSliceData ( bool  _arg )

virtual

Turn On/Off isotropic resampling prior to running the segmentation

template<class TInputImage , class TOutputImage >

void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetSeeds ( PointListType  p )

inline

Definition at line 140 of file itkLesionSegmentationImageFilter8.h.

References itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_Seeds.

template<class TInputImage , class TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetSigma ( SigmaArrayType  sigmas )

virtual

template<class TInputImage , class TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetSigmoidBeta ( double  _arg )

virtual

Set the beta for the sigmoid intensity feature

template<class TInputImage , class TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetUseVesselEnhancingDiffusion ( bool  )

virtual

Turn On/Off the use of vessel enhancing diffusion (R. Manniesing et al) prior to computing the vesselness. This is slow. Defaults to false.

template<class TInputImage , class TOutputImage >

itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::typedef

(

Concept::HasNumericTraits< InputImagePixelType >

)

Begin concept checking This class requires InputHasNumericTraitsCheck in the form of (Concept::HasNumericTraits<InputImagePixelType>)

template<class TInputImage , class TOutputImage >

itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::typedef

(

Concept::HasNumericTraits< OutputImagePixelType >

)

This class requires OutputHasNumericTraitsCheck in the form of (Concept::HasNumericTraits<OutputImagePixelType>)

template<class TInputImage , class TOutputImage >

itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::typedef

(

Concept::SameDimension< ImageDimension, OutputImageDimension >

)

This class requires SameDimensionCheck in the form of (Concept::SameDimension<ImageDimension, OutputImageDimension>)

template<class TInputImage , class TOutputImage >

itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::typedef

(

Concept::IsFloatingPoint< OutputImagePixelType >

)

This class requires OutputIsFloatingPointCheck in the form of (Concept::IsFloatingPoint<OutputImagePixelType>)

template<class TInputImage , class TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::UseVesselEnhancingDiffusionOff ( )

virtual

Turn On/Off the use of vessel enhancing diffusion (R. Manniesing et al) prior to computing the vesselness. This is slow. Defaults to false.

template<class TInputImage , class TOutputImage >

virtual void itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::UseVesselEnhancingDiffusionOn ( )

virtual

Turn On/Off the use of vessel enhancing diffusion (R. Manniesing et al) prior to computing the vesselness. This is slow. Defaults to false.

Member Data Documentation

template<class TInputImage , class TOutputImage >

const unsigned int itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::ImageDimension = TInputImage::ImageDimension

static

ImageDimension constant

Definition at line 79 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_AnisotropyThreshold

private

Definition at line 206 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

CannyEdgesFeatureGeneratorType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_CannyEdgesFeatureGenerator

private

Definition at line 195 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

CommandType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_CommandObserver

private

Definition at line 200 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

CropFilterType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_CropFilter

private

Definition at line 198 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_FastMarchingDistanceFromSeeds

private

Definition at line 189 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_FastMarchingStoppingTime

private

Definition at line 188 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

FeatureAggregatorType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_FeatureAggregator

private

Definition at line 196 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

InputImageSpatialObjectType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_InputSpatialObject

private

Definition at line 204 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

IsotropicResamplerType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_IsotropicResampler

private

Definition at line 199 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

LesionSegmentationMethodType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_LesionSegmentationMethod

private

Definition at line 191 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

LungWallGeneratorType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_LungWallFeatureGenerator

private

Definition at line 192 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

RegionType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_RegionOfInterest

private

Definition at line 201 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

bool itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_ResampleThickSliceData

private

Definition at line 205 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

SeedSpatialObjectType::PointListType itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_Seeds

private

Definition at line 203 of file itkLesionSegmentationImageFilter8.h.

Referenced by itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetSeeds(), and itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::SetSeeds().

template<class TInputImage , class TOutputImage >

SegmentationModuleType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_SegmentationModule

private

Definition at line 197 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

double itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_SigmoidBeta

private

Definition at line 185 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

SigmoidFeatureGeneratorType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_SigmoidFeatureGenerator

private

Definition at line 194 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

std::string itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_StatusMessage

private

Definition at line 202 of file itkLesionSegmentationImageFilter8.h.

Referenced by itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::GetStatusMessage().

template<class TInputImage , class TOutputImage >

bool itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_UserSpecifiedSigmas

private

Definition at line 207 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

VesselnessGeneratorType::Pointer itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::m_VesselnessFeatureGenerator

private

Definition at line 193 of file itkLesionSegmentationImageFilter8.h.

template<class TInputImage , class TOutputImage >

const unsigned int itk::LesionSegmentationImageFilter8< TInputImage, TOutputImage >::OutputImageDimension = TOutputImage::ImageDimension

static

Definition at line 82 of file itkLesionSegmentationImageFilter8.h.

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The documentation for this class was generated from the following file:

• itkLesionSegmentationImageFilter8.h