#include <itkMattesMutualInformationImageToImageMetric.h>

Inheritance diagram for itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >:

Collaboration diagram for itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >:

Detailed Description

template<typename TFixedImage, typename TMovingImage>
class itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >

Computes the mutual information between two images to be registered using the method of Mattes et al.

MattesMutualInformationImageToImageMetric computes the mutual information between a fixed and moving image to be registered.

This class is templated over the FixedImage type and the MovingImage type.

The fixed and moving images are set via methods SetFixedImage() and SetMovingImage(). This metric makes use of user specified Transform and Interpolator. The Transform is used to map points from the fixed image to the moving image domain. The Interpolator is used to evaluate the image intensity at user specified geometric points in the moving image. The Transform and Interpolator are set via methods SetTransform() and SetInterpolator().

If a BSplineInterpolationFunction is used, this class obtain image derivatives from the BSpline interpolator. Otherwise, image derivatives are computed using central differencing.

Warning: This metric assumes that the moving image has already been connected to the interpolator outside of this class.

The method GetValue() computes of the mutual information while method GetValueAndDerivative() computes both the mutual information and its derivatives with respect to the transform parameters.

The calculations are based on the method of Mattes et al [1,2] where the probability density distribution are estimated using Parzen histograms. Since the fixed image PDF does not contribute to the derivatives, it does not need to be smooth. Hence, a zero order (box car) BSpline kernel is used for the fixed image intensity PDF. On the other hand, to ensure smoothness a third order BSpline kernel is used for the moving image intensity PDF.

On Initialize(), the FixedImage is uniformly sampled within the FixedImageRegion. The number of samples used can be set via SetNumberOfSpatialSamples(). Typically, the number of spatial samples used should increase with the image size.

The option UseAllPixelOn() disables the random sampling and uses all the pixels of the FixedImageRegion in order to estimate the joint intensity PDF.

During each call of GetValue(), GetDerivatives(), GetValueAndDerivatives(), marginal and joint intensity PDF's values are estimated at discrete position or bins. The number of bins used can be set via SetNumberOfHistogramBins(). To handle data with arbitray magnitude and dynamic range, the image intensity is scale such that any contribution to the histogram will fall into a valid bin.

One the PDF's have been contructed, the mutual information is obtained by doubling summing over the discrete PDF values.

Notes:

This class returns the negative mutual information value.

References: [1] "Nonrigid multimodality image registration" D. Mattes, D. R. Haynor, H. Vesselle, T. Lewellen and W. Eubank Medical Imaging 2001: Image Processing, 2001, pp. 1609-1620. [2] "PET-CT Image Registration in the Chest Using Free-form Deformations" D. Mattes, D. R. Haynor, H. Vesselle, T. Lewellen and W. Eubank IEEE Transactions in Medical Imaging. Vol.22, No.1, January 2003. pp.120-128. [3] "Optimization of Mutual Information for MultiResolution Image Registration" P. Thevenaz and M. Unser IEEE Transactions in Image Processing, 9(12) December 2000.

Examples:: Examples/RegistrationITKv3/DeformableRegistration12.cxx, Examples/RegistrationITKv3/DeformableRegistration13.cxx, Examples/RegistrationITKv3/DeformableRegistration14.cxx, Examples/RegistrationITKv3/DeformableRegistration15.cxx, Examples/RegistrationITKv3/DeformableRegistration8.cxx, Examples/RegistrationITKv3/ImageRegistration11.cxx, Examples/RegistrationITKv3/ImageRegistration13.cxx, Examples/RegistrationITKv3/ImageRegistration16.cxx, Examples/RegistrationITKv3/ImageRegistration4.cxx, Examples/RegistrationITKv3/MultiResImageRegistration1.cxx, Examples/RegistrationITKv3/MultiResImageRegistration2.cxx, Examples/RegistrationITKv3/MultiResImageRegistration3.cxx, Examples/RegistrationITKv4/DeformableRegistration13.cxx, Examples/RegistrationITKv4/DeformableRegistration14.cxx, Examples/RegistrationITKv4/DeformableRegistration15.cxx, Examples/RegistrationITKv4/ImageRegistration16.cxx, Examples/RegistrationITKv4/MultiResImageRegistration2.cxx, Examples/RegistrationITKv4/MultiResImageRegistration3.cxx, and WikiExamples/Registration/WatchRegistration.cxx.

Definition at line 112 of file itkMattesMutualInformationImageToImageMetric.h.

Classes
struct	MMIMetricPerThreadStruct

Public Types
typedef Superclass::BSplineTransformIndexArrayType	BSplineTransformIndexArrayType

typedef Superclass::BSplineTransformWeightsType	BSplineTransformWeightsType

typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::CoordinateRepresentationType	CoordinateRepresentationType

typedef Superclass::DerivativeType	DerivativeType

typedef Superclass::FixedImageConstPointer	FixedImageConstPointer

typedef Superclass::FixedImageSampleContainer	FixedImageSampleContainer

typedef Superclass::FixedImageType	FixedImageType

typedef Superclass::ImageDerivativesType	ImageDerivativesType

typedef Superclass::IndexValueType	IndexValueType

typedef Superclass::InterpolatorType	InterpolatorType

typedef Image< PDFValueType, 3 >	JointPDFDerivativesType

typedef Image< PDFValueType, 2 >	JointPDFType

typedef Superclass::MeasureType	MeasureType

typedef Superclass::MovingImageConstPointer	MovingImageConstPointer

typedef Superclass::MovingImagePointType	MovingImagePointType

typedef Superclass::MovingImageType	MovingImageType

typedef FixedImageType::OffsetValueType	OffsetValueType

typedef Superclass::ParametersType	ParametersType

typedef double	PDFValueType

typedef SmartPointer< Self >	Pointer

typedef MattesMutualInformationImageToImageMetric	Self

typedef ImageToImageMetric < TFixedImage, TMovingImage >	Superclass

typedef Superclass::TransformJacobianType	TransformJacobianType

typedef Superclass::TransformPointer	TransformPointer

typedef Superclass::TransformType	TransformType

typedef Superclass::WeightsValueType	WeightsValueType

Public Types inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
typedef SmartPointer< const Self >	ConstPointer

typedef Superclass::ParametersValueType	CoordinateRepresentationType

typedef Superclass::DerivativeType	DerivativeType

typedef FixedImageType::ConstPointer	FixedImageConstPointer

typedef std::vector < FixedImageIndexType >	FixedImageIndexContainer

typedef FixedImageType::IndexType	FixedImageIndexType

typedef FixedImageIndexType::IndexValueType	FixedImageIndexValueType

typedef FixedImageMaskType::ConstPointer	FixedImageMaskConstPointer

typedef FixedImageMaskType::Pointer	FixedImageMaskPointer

typedef SpatialObject < itkGetStaticConstMacro(FixedImageDimension) >	FixedImageMaskType

typedef TFixedImage::PixelType	FixedImagePixelType

typedef TransformType::InputPointType	FixedImagePointType

typedef FixedImageType::RegionType	FixedImageRegionType

typedef TFixedImage	FixedImageType

typedef TransformType::InputPointType	InputPointType

typedef InterpolatorType::Pointer	InterpolatorPointer

typedef InterpolateImageFunction < MovingImageType, CoordinateRepresentationType >	InterpolatorType

typedef Superclass::MeasureType	MeasureType

typedef MovingImageType::ConstPointer	MovingImageConstPointer

typedef MovingImageType::IndexType	MovingImageIndexType

typedef MovingImageMaskType::ConstPointer	MovingImageMaskConstPointer

typedef MovingImageMaskType::Pointer	MovingImageMaskPointer

typedef SpatialObject < itkGetStaticConstMacro(MovingImageDimension) >	MovingImageMaskType

typedef TMovingImage::PixelType	MovingImagePixelType

typedef TransformType::OutputPointType	MovingImagePointType

typedef TMovingImage	MovingImageType

typedef MultiThreader	MultiThreaderType

typedef TransformType::OutputPointType	OutputPointType

typedef Superclass::ParametersType	ParametersType

typedef SmartPointer< Self >	Pointer

typedef ImageToImageMetric	Self

typedef SingleValuedCostFunction	Superclass

typedef TransformType::JacobianType	TransformJacobianType

typedef TransformType::ParametersType	TransformParametersType

typedef TransformType::Pointer	TransformPointer

typedef Transform < CoordinateRepresentationType, itkGetStaticConstMacro(MovingImageDimension), itkGetStaticConstMacro(FixedImageDimension) >	TransformType

typedef NumericTraits < MovingImagePixelType > ::RealType	RealType

typedef CovariantVector < RealType, itkGetStaticConstMacro(MovingImageDimension) >	GradientPixelType

typedef Image < GradientPixelType, itkGetStaticConstMacro(MovingImageDimension) >	GradientImageType

typedef SmartPointer < GradientImageType >	GradientImagePointer

typedef GradientRecursiveGaussianImageFilter < MovingImageType, GradientImageType >	GradientImageFilterType

typedef GradientImageFilterType::Pointer	GradientImageFilterPointer

Public Types inherited from itk::SingleValuedCostFunction
typedef SmartPointer< const Self >	ConstPointer

typedef Array < ParametersValueType >	DerivativeType

typedef double	MeasureType

typedef Superclass::ParametersType	ParametersType

typedef Superclass::ParametersValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef SingleValuedCostFunction	Self

typedef CostFunction	Superclass

Public Types inherited from itk::CostFunctionTemplate< TInternalComputationValueType >
typedef SmartPointer< const Self >	ConstPointer

typedef OptimizerParameters < TInternalComputationValueType >	ParametersType

typedef TInternalComputationValueType	ParametersValueType

typedef SmartPointer< Self >	Pointer

typedef CostFunctionTemplate	Self

typedef Object	Superclass

Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef Object	Self

typedef LightObject	Superclass

Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer

typedef SmartPointer< Self >	Pointer

typedef LightObject	Self

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother () const

void	GetDerivative (const ParametersType &parameters, DerivativeType &Derivative) const override

virtual const char *	GetNameOfClass () const

MeasureType	GetValue (const ParametersType &parameters) const override

void	GetValueAndDerivative (const ParametersType &parameters, MeasureType &Value, DerivativeType &Derivative) const override

virtual void	Initialize (void) override throw ( ExceptionObject )


virtual void	SetNumberOfHistogramBins (SizeValueType _arg)

virtual const SizeValueType &	GetNumberOfHistogramBins () const


virtual void	SetUseExplicitPDFDerivatives (bool _arg)

virtual const bool &	GetUseExplicitPDFDerivatives () const

virtual void	UseExplicitPDFDerivativesOn ()

virtual void	UseExplicitPDFDerivativesOff ()


const JointPDFType::Pointer	GetJointPDF () const


const JointPDFDerivativesType::Pointer	GetJointPDFDerivatives () const

Public Member Functions inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
virtual void	ComputeGradient ()

virtual const FixedImageRegionType &	GetFixedImageRegion () const

virtual const FixedImagePixelType &	GetFixedImageSamplesIntensityThreshold () const

virtual const GradientImageType *	GetGradientImage () const

virtual const InterpolatorType *	GetInterpolator () const

virtual GradientImageType *	GetModifiableGradientImage ()

virtual InterpolatorType *	GetModifiableInterpolator ()

virtual TransformType *	GetModifiableTransform ()

SizeValueType	GetNumberOfMovingImageSamples (void)

virtual unsigned int	GetNumberOfParameters (void) const override

virtual const SizeValueType &	GetNumberOfPixelsCounted () const

SizeValueType	GetNumberOfSpatialSamples (void)

virtual const TransformType *	GetTransform () const

virtual const bool &	GetUseAllPixels () const

virtual const bool &	GetUseFixedImageIndexes () const

virtual const bool &	GetUseFixedImageSamplesIntensityThreshold () const

virtual const bool &	GetUseSequentialSampling () const

virtual void	MultiThreadingInitialize (void) throw ( ExceptionObject )

void	SetFixedImageIndexes (const FixedImageIndexContainer &indexes)

virtual void	SetFixedImageRegion (const FixedImageRegionType reg)

void	SetFixedImageSamplesIntensityThreshold (const FixedImagePixelType &thresh)

virtual void	SetInterpolator (InterpolatorType *_arg)

void	SetNumberOfSpatialSamples (SizeValueType num)

virtual void	SetTransform (TransformType *_arg)

void	SetTransformParameters (const ParametersType &parameters) const

void	SetUseAllPixels (bool useAllPixels)

void	SetUseFixedImageIndexes (bool useIndex)

void	SetUseFixedImageSamplesIntensityThreshold (bool useThresh)

void	SetUseSequentialSampling (bool sequentialSampling)

void	UseAllPixelsOff (void)

void	UseAllPixelsOn (void)

virtual void	SetFixedImage (const FixedImageType *_arg)

virtual const FixedImageType *	GetFixedImage () const

virtual void	SetMovingImage (const MovingImageType *_arg)

virtual const MovingImageType *	GetMovingImage () const

virtual void	SetMovingImageMask (MovingImageMaskType *_arg)

virtual void	SetMovingImageMask (const MovingImageMaskType *_arg)

virtual const MovingImageMaskType *	GetMovingImageMask () const

virtual void	SetFixedImageMask (FixedImageMaskType *_arg)

virtual void	SetFixedImageMask (const FixedImageMaskType *_arg)

virtual const FixedImageMaskType *	GetFixedImageMask () const

void	SetNumberOfThreads (ThreadIdType numberOfThreads)

virtual const ThreadIdType &	GetNumberOfThreads () const

virtual void	SetComputeGradient (bool _arg)

virtual const bool &	GetComputeGradient () const

virtual void	ComputeGradientOn ()

virtual void	ComputeGradientOff ()

virtual void	SetNumberOfFixedImageSamples (SizeValueType numSamples)

virtual const SizeValueType &	GetNumberOfFixedImageSamples () const

void	ReinitializeSeed ()

void	ReinitializeSeed (int seed)

virtual void	SetUseCachingOfBSplineWeights (bool _arg)

virtual const bool &	GetUseCachingOfBSplineWeights () const

virtual void	UseCachingOfBSplineWeightsOn ()

virtual void	UseCachingOfBSplineWeightsOff ()

virtual MultiThreaderType *	GetModifiableThreader ()

virtual const MultiThreaderType *	GetThreader () const

const TransformPointer *	GetThreaderTransform ()

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)

unsigned long	AddObserver (const EventObject &event, Command *) const

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary ()

const MetaDataDictionary &	GetMetaDataDictionary () const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

virtual void	Register () const override

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag)

void	SetDebug (bool debugFlag) const

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

virtual void	SetReferenceCount (int) override

virtual void	UnRegister () const noexceptoverride

virtual void	SetObjectName (std::string _arg)

virtual const std::string &	GetObjectName () const

Public Member Functions inherited from itk::LightObject
virtual void	Delete ()

virtual int	GetReferenceCount () const

	itkCloneMacro (Self)

void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool flag)

Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Static Public Attributes
static const unsigned int	MovingImageDimension = MovingImageType::ImageDimension

Static Public Attributes inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
static const unsigned int	MovingImageDimension = TMovingImage::ImageDimension

static const unsigned int	FixedImageDimension = TFixedImage::ImageDimension

Protected Member Functions
	MattesMutualInformationImageToImageMetric ()

void	PrintSelf (std::ostream &os, Indent indent) const override

virtual	~MattesMutualInformationImageToImageMetric ()

Protected Member Functions inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
virtual void	ComputeImageDerivatives (const MovingImagePointType &mappedPoint, ImageDerivativesType &gradient, ThreadIdType threadId) const

void	GetValueAndDerivativeMultiThreadedInitiate () const

void	GetValueAndDerivativeMultiThreadedPostProcessInitiate () const

void	GetValueAndDerivativeMultiThreadedPreProcessInitiate () const

virtual void	GetValueAndDerivativeThread (ThreadIdType threadId) const

void	GetValueMultiThreadedInitiate () const

void	GetValueMultiThreadedPostProcessInitiate () const

void	GetValueMultiThreadedPreProcessInitiate () const

virtual void	GetValueThread (ThreadIdType threadId) const

	ImageToImageMetric ()

virtual void	PreComputeTransformValues ()

virtual void	SampleFixedImageIndexes (FixedImageSampleContainer &samples) const

virtual void	SampleFixedImageRegion (FixedImageSampleContainer &samples) const

virtual void	SampleFullFixedImageRegion (FixedImageSampleContainer &samples) const

virtual void	SynchronizeTransforms () const

virtual void	TransformPoint (unsigned int sampleNumber, MovingImagePointType &mappedPoint, bool &sampleWithinSupportRegion, double &movingImageValue, ThreadIdType threadId) const

virtual void	TransformPointWithDerivatives (unsigned int sampleNumber, MovingImagePointType &mappedPoint, bool &sampleWithinSupportRegion, double &movingImageValue, ImageDerivativesType &gradient, ThreadIdType threadId) const

virtual	~ImageToImageMetric ()

Protected Member Functions inherited from itk::SingleValuedCostFunction
	SingleValuedCostFunction ()

virtual	~SingleValuedCostFunction ()

Protected Member Functions inherited from itk::CostFunctionTemplate< TInternalComputationValueType >
	CostFunctionTemplate ()

virtual	~CostFunctionTemplate ()

Protected Member Functions inherited from itk::Object
	Object ()

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &time)

virtual	~Object ()

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Private Types
typedef BSplineDerivativeKernelFunction < 3, PDFValueType >	CubicBSplineDerivativeFunctionType

typedef BSplineKernelFunction < 3, PDFValueType >	CubicBSplineFunctionType

typedef JointPDFDerivativesType::IndexType	JointPDFDerivativesIndexType

typedef JointPDFDerivativesType::RegionType	JointPDFDerivativesRegionType

typedef JointPDFDerivativesType::SizeType	JointPDFDerivativesSizeType

typedef JointPDFDerivativesType::PixelType	JointPDFDerivativesValueType

typedef JointPDFType::IndexType	JointPDFIndexType

typedef JointPDFType::RegionType	JointPDFRegionType

typedef JointPDFType::SizeType	JointPDFSizeType

typedef JointPDFType::PixelType	JointPDFValueType

typedef std::vector< PDFValueType >	MarginalPDFType

typedef Array2D< PRatioType >	PRatioArrayType

typedef PDFValueType	PRatioType

Private Member Functions
void	ComputeFixedImageParzenWindowIndices (FixedImageSampleContainer &samples)

void	ComputePDFDerivatives (ThreadIdType threadId, unsigned int sampleNumber, int movingImageParzenWindowIndex, const ImageDerivativesType &movingImageGradientValue, PDFValueType cubicBSplineDerivativeValue) const

virtual void	GetValueAndDerivativeThreadPostProcess (ThreadIdType threadId, bool withinSampleThread) const override

virtual void	GetValueAndDerivativeThreadPreProcess (ThreadIdType threadId, bool withinSampleThread) const override

virtual bool	GetValueAndDerivativeThreadProcessSample (ThreadIdType threadId, SizeValueType fixedImageSample, const MovingImagePointType &mappedPoint, double movingImageValue, const ImageDerivativesType &movingImageGradientValue) const override

virtual void	GetValueThreadPostProcess (ThreadIdType threadId, bool withinSampleThread) const override

virtual void	GetValueThreadPreProcess (ThreadIdType threadId, bool withinSampleThread) const override

virtual bool	GetValueThreadProcessSample (ThreadIdType threadId, SizeValueType fixedImageSample, const MovingImagePointType &mappedPoint, double movingImageValue) const override

	itkAlignedTypedef (ITK_CACHE_LINE_ALIGNMENT, PaddedMMIMetricPerThreadStruct, AlignedMMIMetricPerThreadStruct)

	itkPadStruct (ITK_CACHE_LINE_ALIGNMENT, MMIMetricPerThreadStruct, PaddedMMIMetricPerThreadStruct)

	MattesMutualInformationImageToImageMetric (const Self &) ITK_DELETE_FUNCTION

void	operator= (const Self &) ITK_DELETE_FUNCTION

Additional Inherited Members
Protected Types inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
typedef std::vector< bool >	BooleanArrayType

typedef BSplineInterpolateImageFunction < MovingImageType, CoordinateRepresentationType >	BSplineInterpolatorType

typedef FixedArray < SizeValueType, FixedImageType::ImageDimension >	BSplineParametersOffsetType

typedef BSplineTransformType::ParameterIndexArrayType	BSplineTransformIndexArrayType

typedef Array2D< IndexValueType >	BSplineTransformIndicesArrayType

typedef BSplineBaseTransform < CoordinateRepresentationType, FixedImageType::ImageDimension, itkGetStaticConstMacro(DeformationSplineOrder) >	BSplineTransformType

typedef Array2D< WeightsValueType >	BSplineTransformWeightsArrayType

typedef BSplineTransformType::WeightsType	BSplineTransformWeightsType

typedef CentralDifferenceImageFunction < MovingImageType, CoordinateRepresentationType >	DerivativeFunctionType

typedef std::vector < FixedImageSamplePoint >	FixedImageSampleContainer

typedef CovariantVector < double, itkGetStaticConstMacro(MovingImageDimension) >	ImageDerivativesType

typedef BSplineTransformIndexArrayType::ValueType	IndexValueType

typedef std::vector < MovingImagePointType >	MovingImagePointArrayType

typedef BSplineTransformWeightsType::ValueType	WeightsValueType

Static Protected Member Functions inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
static ITK_THREAD_RETURN_TYPE	GetValueAndDerivativeMultiThreaded (void *arg)

static ITK_THREAD_RETURN_TYPE	GetValueAndDerivativeMultiThreadedPostProcess (void *arg)

static ITK_THREAD_RETURN_TYPE	GetValueAndDerivativeMultiThreadedPreProcess (void *arg)

static ITK_THREAD_RETURN_TYPE	GetValueMultiThreaded (void *arg)

static ITK_THREAD_RETURN_TYPE	GetValueMultiThreadedPostProcess (void *arg)

static ITK_THREAD_RETURN_TYPE	GetValueMultiThreadedPreProcess (void *arg)

Protected Attributes inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
BSplineInterpolatorType::Pointer	m_BSplineInterpolator

BSplineParametersOffsetType	m_BSplineParametersOffset

MovingImagePointArrayType	m_BSplinePreTransformPointsArray

BSplineTransformType::Pointer	m_BSplineTransform

BSplineTransformIndexArrayType	m_BSplineTransformIndices

BSplineTransformIndicesArrayType	m_BSplineTransformIndicesArray

BSplineTransformWeightsType	m_BSplineTransformWeights

BSplineTransformWeightsArrayType	m_BSplineTransformWeightsArray

bool	m_ComputeGradient

DerivativeFunctionType::Pointer	m_DerivativeCalculator

FixedImageConstPointer	m_FixedImage

FixedImageIndexContainer	m_FixedImageIndexes

FixedImageMaskConstPointer	m_FixedImageMask

FixedImageSampleContainer	m_FixedImageSamples

FixedImagePixelType	m_FixedImageSamplesIntensityThreshold

GradientImagePointer	m_GradientImage

InterpolatorPointer	m_Interpolator

bool	m_InterpolatorIsBSpline

MovingImageConstPointer	m_MovingImage

MovingImageMaskConstPointer	m_MovingImageMask

SizeValueType	m_NumberOfFixedImageSamples

SizeValueType	m_NumberOfParameters

SizeValueType	m_NumberOfPixelsCounted

ThreadIdType	m_NumberOfThreads

SizeValueType	m_NumBSplineWeights

int	m_RandomSeed

bool	m_ReseedIterator

MultiThreaderType::Pointer	m_Threader

BSplineTransformIndexArrayType *	m_ThreaderBSplineTransformIndices

BSplineTransformWeightsType *	m_ThreaderBSplineTransformWeights

unsigned int *	m_ThreaderNumberOfMovingImageSamples

MultiThreaderParameterType	m_ThreaderParameter

TransformPointer *	m_ThreaderTransform

TransformPointer	m_Transform

bool	m_TransformIsBSpline

bool	m_UseAllPixels

bool	m_UseCachingOfBSplineWeights

bool	m_UseFixedImageIndexes

bool	m_UseFixedImageSamplesIntensityThreshold

bool	m_UseSequentialSampling

BooleanArrayType	m_WithinBSplineSupportRegionArray

bool	m_WithinThreadPostProcess

bool	m_WithinThreadPreProcess

Protected Attributes inherited from itk::LightObject
AtomicInt< int >	m_ReferenceCount

Static Protected Attributes inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
static const unsigned int	DeformationSplineOrder = 3

Member Typedef Documentation

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::BSplineTransformIndexArrayType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::BSplineTransformIndexArrayType

Definition at line 144 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::BSplineTransformWeightsType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::BSplineTransformWeightsType

Definition at line 143 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef SmartPointer<const Self> itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ConstPointer

Definition at line 121 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::CoordinateRepresentationType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::CoordinateRepresentationType

Definition at line 146 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef BSplineDerivativeKernelFunction<3,PDFValueType> itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::CubicBSplineDerivativeFunctionType

private

Definition at line 274 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef BSplineKernelFunction<3,PDFValueType> itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::CubicBSplineFunctionType

private

Typedefs for BSpline kernel and derivative functions.

Definition at line 273 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::DerivativeType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::DerivativeType

Definition at line 136 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::FixedImageConstPointer itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageConstPointer

Definition at line 141 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::FixedImageSampleContainer itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageSampleContainer

Definition at line 147 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::FixedImageType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::FixedImageType

Definition at line 138 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::ImageDerivativesType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ImageDerivativesType

Definition at line 148 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::IndexValueType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::IndexValueType

Definition at line 150 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::InterpolatorType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorType

Definition at line 134 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef JointPDFDerivativesType::IndexType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFDerivativesIndexType

private

Definition at line 267 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef JointPDFDerivativesType::RegionType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFDerivativesRegionType

private

Definition at line 269 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef JointPDFDerivativesType::SizeType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFDerivativesSizeType

private

Definition at line 270 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Image<PDFValueType, 3> itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFDerivativesType

Definition at line 221 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef JointPDFDerivativesType::PixelType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFDerivativesValueType

private

Definition at line 268 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef JointPDFType::IndexType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFIndexType

private

Definition at line 263 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef JointPDFType::RegionType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFRegionType

private

Definition at line 265 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef JointPDFType::SizeType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFSizeType

private

Definition at line 266 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Image<PDFValueType, 2> itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFType

Typedef for the joint PDF and PDF derivatives are stored as ITK Images.

Definition at line 220 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef JointPDFType::PixelType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::JointPDFValueType

private

Definition at line 264 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef std::vector< PDFValueType > itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MarginalPDFType

private

The moving image marginal PDF.

Definition at line 322 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::MeasureType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MeasureType

Definition at line 135 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::MovingImageConstPointer itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageConstPointer

Definition at line 142 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::MovingImagePointType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImagePointType

Definition at line 140 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::MovingImageType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageType

Definition at line 139 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef FixedImageType::OffsetValueType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::OffsetValueType

Definition at line 152 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::ParametersType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ParametersType

Definition at line 137 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef double itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::PDFValueType

The marginal PDFs are stored as std::vector.

Definition at line 213 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef SmartPointer<Self> itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Pointer

Definition at line 120 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Array2D<PRatioType> itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::PRatioArrayType

private

Definition at line 317 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef PDFValueType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::PRatioType

private

Helper array for storing the values of the JointPDF ratios.

Definition at line 316 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef MattesMutualInformationImageToImageMetric itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Self

Standard class typedefs.

Definition at line 118 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef ImageToImageMetric<TFixedImage, TMovingImage> itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Superclass

Definition at line 119 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::TransformJacobianType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformJacobianType

Definition at line 133 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::TransformPointer itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformPointer

Definition at line 132 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::TransformType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::TransformType

Types inherited from Superclass.

Definition at line 128 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

typedef Superclass::WeightsValueType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::WeightsValueType

Definition at line 149 of file itkMattesMutualInformationImageToImageMetric.h.

Constructor & Destructor Documentation

template<typename TFixedImage , typename TMovingImage >

itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MattesMutualInformationImageToImageMetric ( )

protected

template<typename TFixedImage , typename TMovingImage >

virtual itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::~MattesMutualInformationImageToImageMetric ( )

protectedvirtual

template<typename TFixedImage , typename TMovingImage >

itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MattesMutualInformationImageToImageMetric ( const Self & )

private

Member Function Documentation

template<typename TFixedImage , typename TMovingImage >

void itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ComputeFixedImageParzenWindowIndices ( FixedImageSampleContainer & samples )

private

Precompute fixed image parzen window indices.

template<typename TFixedImage , typename TMovingImage >

void itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::ComputePDFDerivatives	(	ThreadIdType	threadId,
		unsigned int	sampleNumber,
		int	movingImageParzenWindowIndex,
		const ImageDerivativesType &	movingImageGradientValue,
		PDFValueType	cubicBSplineDerivativeValue
	)		const

private

Compute PDF derivative contribution for each parameter.

template<typename TFixedImage , typename TMovingImage >

virtual::itk::LightObject::Pointer itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::CreateAnother ( ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<typename TFixedImage , typename TMovingImage >

void itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetDerivative	(	const ParametersType &	parameters,
		DerivativeType &	Derivative
	)		const

overridevirtual

Get the derivatives of the match measure.

Implements itk::SingleValuedCostFunction.

template<typename TFixedImage , typename TMovingImage >

const JointPDFType::Pointer itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetJointPDF ( ) const

inline

Get the internal JointPDF image that was used in creating the metric value.

Definition at line 227 of file itkMattesMutualInformationImageToImageMetric.h.

References itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_MMIMetricPerThreadVariables.

template<typename TFixedImage , typename TMovingImage >

const JointPDFDerivativesType::Pointer itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetJointPDFDerivatives ( ) const

inline

Get the internal JointPDFDeriviative image that was used in creating the metric derivative value. This is only created when UseExplicitPDFDerivatives is ON, and derivatives are requested.

Definition at line 243 of file itkMattesMutualInformationImageToImageMetric.h.

References itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_MMIMetricPerThreadVariables.

template<typename TFixedImage , typename TMovingImage >

virtual const char* itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

template<typename TFixedImage , typename TMovingImage >

virtual const SizeValueType& itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfHistogramBins ( ) const

virtual

Number of bins to used in the histogram. According to Mattes et al the optimum value is 50. The minimum value is 5 due to the padding required by the Parzen windowing with a cubic-BSpline kernel. Note that even if the metric is used on binary images, the number of bins should at least be equal to five.

template<typename TFixedImage , typename TMovingImage >

virtual const bool& itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetUseExplicitPDFDerivatives ( ) const

virtual

This variable selects the method to be used for computing the Metric derivatives with respect to the Transform parameters. Two modes of computation are available. The choice between one and the other is a trade-off between computation speed and memory allocations. The two modes are described in detail below:

UseExplicitPDFDerivatives = True will compute the Metric derivative by first calculating the derivatives of each one of the Joint PDF bins with respect to each one of the Transform parameters and then accumulating these contributions in the final metric derivative array by using a bin-specific weight. The memory required for storing the intermediate derivatives is a 3D array of floating point values with size equals to the product of (number of histogram bins)^2 times number of transform parameters. This method is well suited for Transform with a small number of parameters.

UseExplicitPDFDerivatives = False will compute the Metric derivative by first computing the weights for each one of the Joint PDF bins and caching them into an array. Then it will revisit each one of the PDF bins for computing its weighted contribution to the full derivative array. In this method an extra 2D array is used for storing the weights of each one of the PDF bins. This is an array of floating point values with size equals to (number of histogram bins)^2. This method is well suited for Transforms with a large number of parameters, such as, BSplineTransforms.

template<typename TFixedImage , typename TMovingImage >

MeasureType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetValue ( const ParametersType & parameters ) const

overridevirtual

Get the value.

Implements itk::SingleValuedCostFunction.

template<typename TFixedImage , typename TMovingImage >

void itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivative	(	const ParametersType &	parameters,
		MeasureType &	Value,
		DerivativeType &	Derivative
	)		const

overridevirtual

Get the value and derivatives for single valued optimizers.

Reimplemented from itk::SingleValuedCostFunction.

template<typename TFixedImage , typename TMovingImage >

virtual void itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeThreadPostProcess	(	ThreadIdType	threadId,
		bool	withinSampleThread
	)		const

overrideprivatevirtual

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

template<typename TFixedImage , typename TMovingImage >

virtual void itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeThreadPreProcess	(	ThreadIdType	threadId,
		bool	withinSampleThread
	)		const

overrideprivatevirtual

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

template<typename TFixedImage , typename TMovingImage >

virtual bool itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetValueAndDerivativeThreadProcessSample	(	ThreadIdType	threadId,
		SizeValueType	fixedImageSample,
		const MovingImagePointType &	mappedPoint,
		double	movingImageValue,
		const ImageDerivativesType &	movingImageGradientValue
	)		const

overrideprivatevirtual

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

template<typename TFixedImage , typename TMovingImage >

virtual void itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetValueThreadPostProcess	(	ThreadIdType	threadId,
		bool	withinSampleThread
	)		const

overrideprivatevirtual

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

template<typename TFixedImage , typename TMovingImage >

virtual void itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetValueThreadPreProcess	(	ThreadIdType	threadId,
		bool	withinSampleThread
	)		const

overrideprivatevirtual

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

template<typename TFixedImage , typename TMovingImage >

virtual bool itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetValueThreadProcessSample	(	ThreadIdType	threadId,
		SizeValueType	fixedImageSample,
		const MovingImagePointType &	mappedPoint,
		double	movingImageValue
	)		const

overrideprivatevirtual

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

template<typename TFixedImage , typename TMovingImage >

virtual void itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::Initialize	(	void	)
throw	(	ExceptionObject
	)

overridevirtual

Initialize the Metric by (1) making sure that all the components are present and plugged together correctly, (2) uniformly select NumberOfSpatialSamples within the FixedImageRegion, and (3) allocate memory for pdf data structures.

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

template<typename TFixedImage , typename TMovingImage >

itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::itkAlignedTypedef	(	ITK_CACHE_LINE_ALIGNMENT	,
		PaddedMMIMetricPerThreadStruct	,
		AlignedMMIMetricPerThreadStruct
	)

private

template<typename TFixedImage , typename TMovingImage >

itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::itkPadStruct	(	ITK_CACHE_LINE_ALIGNMENT	,
		MMIMetricPerThreadStruct	,
		PaddedMMIMetricPerThreadStruct
	)

private

template<typename TFixedImage , typename TMovingImage >

static Pointer itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::New ( )

static

Method for creation through the object factory.

template<typename TFixedImage , typename TMovingImage >

void itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::operator= ( const Self & )

private

template<typename TFixedImage , typename TMovingImage >

void itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

template<typename TFixedImage , typename TMovingImage >

virtual void itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetNumberOfHistogramBins ( SizeValueType _arg )

virtual

Number of bins to used in the histogram. According to Mattes et al the optimum value is 50. The minimum value is 5 due to the padding required by the Parzen windowing with a cubic-BSpline kernel. Note that even if the metric is used on binary images, the number of bins should at least be equal to five.

template<typename TFixedImage , typename TMovingImage >

virtual void itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::SetUseExplicitPDFDerivatives ( bool _arg )

virtual

This variable selects the method to be used for computing the Metric derivatives with respect to the Transform parameters. Two modes of computation are available. The choice between one and the other is a trade-off between computation speed and memory allocations. The two modes are described in detail below:

UseExplicitPDFDerivatives = True will compute the Metric derivative by first calculating the derivatives of each one of the Joint PDF bins with respect to each one of the Transform parameters and then accumulating these contributions in the final metric derivative array by using a bin-specific weight. The memory required for storing the intermediate derivatives is a 3D array of floating point values with size equals to the product of (number of histogram bins)^2 times number of transform parameters. This method is well suited for Transform with a small number of parameters.

UseExplicitPDFDerivatives = False will compute the Metric derivative by first computing the weights for each one of the Joint PDF bins and caching them into an array. Then it will revisit each one of the PDF bins for computing its weighted contribution to the full derivative array. In this method an extra 2D array is used for storing the weights of each one of the PDF bins. This is an array of floating point values with size equals to (number of histogram bins)^2. This method is well suited for Transforms with a large number of parameters, such as, BSplineTransforms.

template<typename TFixedImage , typename TMovingImage >

virtual void itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::UseExplicitPDFDerivativesOff ( )

virtual

This variable selects the method to be used for computing the Metric derivatives with respect to the Transform parameters. Two modes of computation are available. The choice between one and the other is a trade-off between computation speed and memory allocations. The two modes are described in detail below:

UseExplicitPDFDerivatives = True will compute the Metric derivative by first calculating the derivatives of each one of the Joint PDF bins with respect to each one of the Transform parameters and then accumulating these contributions in the final metric derivative array by using a bin-specific weight. The memory required for storing the intermediate derivatives is a 3D array of floating point values with size equals to the product of (number of histogram bins)^2 times number of transform parameters. This method is well suited for Transform with a small number of parameters.

UseExplicitPDFDerivatives = False will compute the Metric derivative by first computing the weights for each one of the Joint PDF bins and caching them into an array. Then it will revisit each one of the PDF bins for computing its weighted contribution to the full derivative array. In this method an extra 2D array is used for storing the weights of each one of the PDF bins. This is an array of floating point values with size equals to (number of histogram bins)^2. This method is well suited for Transforms with a large number of parameters, such as, BSplineTransforms.

template<typename TFixedImage , typename TMovingImage >

virtual void itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::UseExplicitPDFDerivativesOn ( )

virtual

This variable selects the method to be used for computing the Metric derivatives with respect to the Transform parameters. Two modes of computation are available. The choice between one and the other is a trade-off between computation speed and memory allocations. The two modes are described in detail below:

UseExplicitPDFDerivatives = True will compute the Metric derivative by first calculating the derivatives of each one of the Joint PDF bins with respect to each one of the Transform parameters and then accumulating these contributions in the final metric derivative array by using a bin-specific weight. The memory required for storing the intermediate derivatives is a 3D array of floating point values with size equals to the product of (number of histogram bins)^2 times number of transform parameters. This method is well suited for Transform with a small number of parameters.

UseExplicitPDFDerivatives = False will compute the Metric derivative by first computing the weights for each one of the Joint PDF bins and caching them into an array. Then it will revisit each one of the PDF bins for computing its weighted contribution to the full derivative array. In this method an extra 2D array is used for storing the weights of each one of the PDF bins. This is an array of floating point values with size equals to (number of histogram bins)^2. This method is well suited for Transforms with a large number of parameters, such as, BSplineTransforms.

Member Data Documentation

template<typename TFixedImage , typename TMovingImage >

CubicBSplineDerivativeFunctionType::Pointer itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_CubicBSplineDerivativeKernel

private

Definition at line 313 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

CubicBSplineFunctionType::Pointer itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_CubicBSplineKernel

private

Cubic BSpline kernel for computing Parzen histograms.

Definition at line 312 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

PDFValueType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_FixedImageBinSize

private

Definition at line 308 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

PDFValueType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_FixedImageNormalizedMin

private

Definition at line 303 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

PDFValueType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_FixedImageTrueMax

private

Definition at line 305 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

PDFValueType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_FixedImageTrueMin

private

Definition at line 304 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

bool itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_ImplicitDerivativesSecondPass

mutableprivate

Definition at line 358 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

AlignedMMIMetricPerThreadStruct* itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_MMIMetricPerThreadVariables

mutableprivate

Definition at line 354 of file itkMattesMutualInformationImageToImageMetric.h.

Referenced by itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetJointPDF(), and itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::GetJointPDFDerivatives().

template<typename TFixedImage , typename TMovingImage >

PDFValueType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_MovingImageBinSize

private

Definition at line 309 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

MarginalPDFType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_MovingImageMarginalPDF

mutableprivate

Definition at line 323 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

PDFValueType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_MovingImageNormalizedMin

private

Definition at line 302 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

PDFValueType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_MovingImageTrueMax

private

Definition at line 307 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

PDFValueType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_MovingImageTrueMin

private

Definition at line 306 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

SizeValueType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_NumberOfHistogramBins

private

Variables to define the marginal and joint histograms.

Definition at line 301 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

PRatioArrayType itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_PRatioArray

mutableprivate

Definition at line 319 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

bool itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::m_UseExplicitPDFDerivatives

private

Definition at line 357 of file itkMattesMutualInformationImageToImageMetric.h.

template<typename TFixedImage , typename TMovingImage >

const unsigned int itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >::MovingImageDimension = MovingImageType::ImageDimension

static

The moving image dimension.

Definition at line 156 of file itkMattesMutualInformationImageToImageMetric.h.

The documentation for this class was generated from the following file:

itkMattesMutualInformationImageToImageMetric.h

Private Attributes
CubicBSplineDerivativeFunctionType::Pointer	m_CubicBSplineDerivativeKernel

CubicBSplineFunctionType::Pointer	m_CubicBSplineKernel

PDFValueType	m_FixedImageBinSize

PDFValueType	m_FixedImageNormalizedMin

PDFValueType	m_FixedImageTrueMax

PDFValueType	m_FixedImageTrueMin

bool	m_ImplicitDerivativesSecondPass

AlignedMMIMetricPerThreadStruct *	m_MMIMetricPerThreadVariables

PDFValueType	m_MovingImageBinSize

MarginalPDFType	m_MovingImageMarginalPDF

PDFValueType	m_MovingImageNormalizedMin

PDFValueType	m_MovingImageTrueMax

PDFValueType	m_MovingImageTrueMin

SizeValueType	m_NumberOfHistogramBins

PRatioArrayType	m_PRatioArray

bool	m_UseExplicitPDFDerivatives

Detailed Description

template<typename TFixedImage, typename TMovingImage> class itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >

Classes

Public Types

Public Member Functions

Static Public Member Functions

Static Public Attributes

Protected Member Functions

Private Types

Private Member Functions

Private Attributes

Additional Inherited Members

Member Typedef Documentation

Constructor & Destructor Documentation

Member Function Documentation

Member Data Documentation

template<typename TFixedImage, typename TMovingImage>
class itk::MattesMutualInformationImageToImageMetric< TFixedImage, TMovingImage >