itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage > Class Template Reference

#include <itkPatchBasedDenoisingBaseImageFilter.h>

Inheritance diagram for itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >:

Collaboration diagram for itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >:

Detailed Description

template<typename TInputImage, typename TOutputImage>
class itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >

Base class for patch-based denoising algorithms.

Implementation of a denoising filter that uses iterative non-local, or semi-local, weighted averaging of image patches for image denoising. The intensity at each pixel 'p' gets updated as a weighted average of intensities of a chosen subset of pixels from the image. The weights are derived using a kernel function on distances between (i) the patch around pixel p and (ii) the patches around the chosen subset of pixels in the image. This class of methods is motivated by texture-based image models and relies on nonparametric statistical modeling in the high-dimensional space of image patches. The choice of an appropriate kernel bandwidth parameter underlying nonparametric modeling can be important and may be estimated using cross-validation schemes.

Engineering issues underlying this class of methods include the choice of the patch size, the definition of a weighting mask on patches (e.g. to make patches more isotropic and less rectangular), the number of iterations over the image, the scheme for sampling patches from the image, and the weights balancing the regularization and data fidelity when the noise model is known.

This class of methods stems from the following two independent and simultaneous publications:

Suyash P. Awate, Ross T. Whitaker. Higher-Order Image Statistics for Unsupervised, Information-Theoretic, Adaptive, Image Filtering. IEEE Int. Conf. Computer Vision and Pattern Recognition (CVPR) 2005; (2):44-51.

Antoni Buades, Bartomeu Coll, Jean-Michel Morel. A Non-Local Algorithm for Image Denoising. IEEE Int. Conf. Computer Vision and Pattern Recognition (CVPR) 2005; (2):60-65.

While the former work considers the denoising algorithm as performing entropy reduction using nonparametric density estimation, the latter work treats it as nonparametric regression. Details underlying this class of methods appear in:

Suyash P. Awate, Ross T. Whitaker. Unsupervised, Information-Theoretic, Adaptive Image Filtering for Image Restoration. IEEE Transactions on Pattern Analysis and Machine Intelligence (TPAMI) 2006; 28(3):364-376.

Antoni Buades, Bartomeu Coll, Jean-Michel Morel. Nonlocal Image and Movie Denoising. International Journal of Computer Vision (IJCV) 2008; 76(2):123-139.

This class provides the base software framework for implementing patch-based denoising methods for multi-dimensional and multi-channel (i.e. vector-valued pixels) images. This framework is multithreaded on shared-memory architectures. Multithreading is incorporated in, both, intensity-updates and bandwidth-estimation stages by subdividing the image domain and associating each sub-domain to a single thread for processing.

To prevent oversmoothing, this class provides the framework for including a data-fidelity term based on the knowledge of the noise model. The intensity updates are then treated as the sum of (1) the weighted smoothing updates (weighted by SmoothingWeight) and (2) the weighted fidelity updates (weighted by NoiseModelFidelityWeight) that prevent large deviations of the denoised image from the noisy data.

See Also

PatchBasedDenoisingImageFilter

Definition at line 94 of file itkPatchBasedDenoisingBaseImageFilter.h.

Public Types
typedef ZeroFluxNeumannBoundaryCondition < OutputImageType >	BoundaryConditionType
enum	ComponentSpaceType {   EUCLIDEAN = 0,   RIEMANNIAN = 1 }
typedef SmartPointer< const Self >	ConstPointer
enum	FilterStateType {   UNINITIALIZED = 0,   INITIALIZED = 1 }
typedef ConstNeighborhoodIterator < InputImageType, BoundaryConditionType >	InputImagePatchIterator
typedef TInputImage	InputImageType
typedef InputImageType::PixelType	InputPixelType
typedef typename::itk::Statistics::ImageToNeighborhoodSampleAdaptor < OutputImageType, BoundaryConditionType >	ListAdaptorType
enum	NoiseModelType {   NOMODEL = 0,   GAUSSIAN = 1,   RICIAN = 2,   POISSON = 3 }
typedef TOutputImage	OutputImageType
typedef OutputImageType::PixelType	OutputPixelType
typedef ListAdaptorType::NeighborhoodRadiusType	PatchRadiusType
typedef Array< float >	PatchWeightsType
typedef OutputPixelType	PixelType
typedef NumericTraits < PixelType >::ValueType	PixelValueType
typedef SmartPointer< Self >	Pointer
typedef PatchBasedDenoisingBaseImageFilter	Self
typedef ImageToImageFilter < TInputImage, TOutputImage >	Superclass
Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef SmartPointer< const Self >	ConstPointer
typedef InputImageType::ConstPointer	InputImageConstPointer
typedef InputImageType::PixelType	InputImagePixelType
typedef InputImageType::Pointer	InputImagePointer
typedef InputImageType::RegionType	InputImageRegionType
typedef TInputImage	InputImageType
typedef Superclass::OutputImagePixelType	OutputImagePixelType
typedef Superclass::OutputImageRegionType	OutputImageRegionType
typedef SmartPointer< Self >	Pointer
typedef ImageToImageFilter	Self
typedef ImageSource< TOutputImage >	Superclass
Public Types inherited from itk::ImageSource< TOutputImage >
typedef SmartPointer< const Self >	ConstPointer
typedef Superclass::DataObjectIdentifierType	DataObjectIdentifierType
typedef DataObject::Pointer	DataObjectPointer
typedef Superclass::DataObjectPointerArraySizeType	DataObjectPointerArraySizeType
typedef OutputImageType::PixelType	OutputImagePixelType
typedef OutputImageType::Pointer	OutputImagePointer
typedef OutputImageType::RegionType	OutputImageRegionType
typedef TOutputImage	OutputImageType
typedef SmartPointer< Self >	Pointer
typedef ImageSource	Self
typedef ProcessObject	Superclass
Public Types inherited from itk::ProcessObject
typedef SmartPointer< const Self >	ConstPointer
typedef DataObject::DataObjectIdentifierType	DataObjectIdentifierType
typedef DataObject::Pointer	DataObjectPointer
typedef std::vector < DataObjectPointer >	DataObjectPointerArray
typedef DataObjectPointerArray::size_type	DataObjectPointerArraySizeType
typedef std::vector < DataObjectIdentifierType >	NameArray
typedef SmartPointer< Self >	Pointer
typedef ProcessObject	Self
typedef Object	Superclass
Public Types inherited from itk::Object
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef Object	Self
typedef LightObject	Superclass
Public Types inherited from itk::LightObject
typedef SmartPointer< const Self >	ConstPointer
typedef SmartPointer< Self >	Pointer
typedef LightObject	Self

Public Member Functions
virtual const unsigned int &	GetElapsedIterations () const
virtual const char *	GetNameOfClass () const
PatchRadiusType	GetPatchDiameterInVoxels () const
PatchRadiusType::SizeValueType	GetPatchLengthInVoxels () const
PatchRadiusType	GetPatchRadiusInVoxels () const
PatchWeightsType	GetPatchWeights () const
void	SetPatchWeights (const PatchWeightsType &weights)
virtual void	SetStateToInitialized ()
virtual void	SetStateToUninitialized ()
virtual void	SetPatchRadius (unsigned int _arg)
virtual unsigned int	GetPatchRadius () const
virtual void	SetNoiseModel (NoiseModelType _arg)
virtual NoiseModelType	GetNoiseModel () const
virtual void	SetSmoothingWeight (double _arg)
virtual double	GetSmoothingWeight () const
virtual void	SetNoiseModelFidelityWeight (double _arg)
virtual double	GetNoiseModelFidelityWeight () const
virtual void	SetKernelBandwidthEstimation (bool _arg)
virtual void	KernelBandwidthEstimationOn ()
virtual void	KernelBandwidthEstimationOff ()
virtual bool	GetKernelBandwidthEstimation () const
virtual void	SetKernelBandwidthUpdateFrequency (unsigned int _arg)
virtual unsigned int	GetKernelBandwidthUpdateFrequency () const
virtual void	SetNumberOfIterations (unsigned int _arg)
virtual const unsigned int &	GetNumberOfIterations () const
virtual void	SetAlwaysTreatComponentsAsEuclidean (bool _arg)
virtual void	AlwaysTreatComponentsAsEuclideanOn ()
virtual void	AlwaysTreatComponentsAsEuclideanOff ()
virtual bool	GetAlwaysTreatComponentsAsEuclidean () const
virtual void	SetState (FilterStateType _arg)
virtual const FilterStateType &	GetState () const
virtual void	SetManualReinitialization (bool _arg)
virtual const bool &	GetManualReinitialization () const
virtual void	ManualReinitializationOn ()
virtual void	ManualReinitializationOff ()
Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
const InputImageType *	GetInput () const
const InputImageType *	GetInput (unsigned int idx) const
virtual void	PopBackInput () override
virtual void	PopFrontInput () override
virtual void	PushBackInput (const InputImageType *image)
virtual void	PushFrontInput (const InputImageType *image)
virtual void	SetInput (const InputImageType *image)
virtual void	SetInput (unsigned int, const TInputImage *image)
virtual void	SetCoordinateTolerance (double _arg)
virtual double	GetCoordinateTolerance () const
virtual void	SetDirectionTolerance (double _arg)
virtual double	GetDirectionTolerance () const
Public Member Functions inherited from itk::ImageSource< TOutputImage >
OutputImageType *	GetOutput (unsigned int idx)
virtual void	GraftNthOutput (unsigned int idx, DataObject *output)
virtual void	GraftOutput (const DataObjectIdentifierType &key, DataObject *output)
OutputImageType *	GetOutput ()
const OutputImageType *	GetOutput () const
virtual void	GraftOutput (DataObject *output)
virtual ProcessObject::DataObjectPointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override
virtual ProcessObject::DataObjectPointer	MakeOutput (const ProcessObject::DataObjectIdentifierType &) override
Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()
virtual void	AbortGenerateDataOn ()
virtual void	EnlargeOutputRequestedRegion (DataObject *)
virtual const bool &	GetAbortGenerateData () const
DataObjectPointerArray	GetIndexedInputs ()
DataObjectPointerArray	GetIndexedOutputs ()
NameArray	GetInputNames () const
DataObjectPointerArray	GetInputs ()
MultiThreader *	GetMultiThreader () const
DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const
DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const
DataObjectPointerArraySizeType	GetNumberOfInputs () const
DataObjectPointerArraySizeType	GetNumberOfOutputs () const
virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const
NameArray	GetOutputNames () const
DataObjectPointerArray	GetOutputs ()
virtual const float &	GetProgress () const
NameArray	GetRequiredInputNames () const
bool	HasInput (const DataObjectIdentifierType &key) const
bool	HasOutput (const DataObjectIdentifierType &key) const
virtual void	PrepareOutputs ()
virtual void	PropagateRequestedRegion (DataObject *output)
virtual void	ResetPipeline ()
virtual void	SetAbortGenerateData (bool _arg)
virtual void	Update ()
virtual void	UpdateLargestPossibleRegion ()
virtual void	UpdateOutputData (DataObject *output)
virtual void	UpdateOutputInformation ()
void	UpdateProgress (float progress)
void	SetProgress (float progress)
virtual void	SetReleaseDataFlag (bool flag)
virtual bool	GetReleaseDataFlag () const
void	ReleaseDataFlagOn ()
void	ReleaseDataFlagOff ()
virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual const bool &	GetReleaseDataBeforeUpdateFlag () const
virtual void	ReleaseDataBeforeUpdateFlagOn ()
virtual void	ReleaseDataBeforeUpdateFlagOff ()
virtual void	SetNumberOfThreads (ThreadIdType _arg)
virtual const ThreadIdType &	GetNumberOfThreads () const
Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
virtual LightObject::Pointer	CreateAnother () const override
virtual void	DebugOff () const
virtual void	DebugOn () const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
MetaDataDictionary &	GetMetaDataDictionary ()
const MetaDataDictionary &	GetMetaDataDictionary () const
virtual ModifiedTimeType	GetMTime () const
virtual const TimeStamp &	GetTimeStamp () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
virtual void	Register () const override
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
void	SetDebug (bool debugFlag) const
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
virtual void	SetReferenceCount (int) override
virtual void	UnRegister () const noexceptoverride
virtual void	SetObjectName (std::string _arg)
virtual const std::string &	GetObjectName () const
Public Member Functions inherited from itk::LightObject
virtual void	Delete ()
virtual int	GetReferenceCount () const
	itkCloneMacro (Self)
void	Print (std::ostream &os, Indent indent=0) const

Static Public Attributes
static const unsigned int	ImageDimension = InputImageType::ImageDimension
Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
static const unsigned int	InputImageDimension = TInputImage::ImageDimension
static const unsigned int	OutputImageDimension = TOutputImage::ImageDimension
Static Public Attributes inherited from itk::ImageSource< TOutputImage >
static const unsigned int	OutputImageDimension = TOutputImage::ImageDimension

Protected Member Functions
virtual void	AllocateUpdateBuffer ()=0
virtual void	ApplyUpdate ()=0
virtual void	ComputeImageUpdate ()=0
virtual void	ComputeKernelBandwidthUpdate ()=0
virtual void	CopyInputToOutput ()=0
ComponentSpaceType	DetermineComponentSpace (const RGBPixel< PixelValueType > &)
ComponentSpaceType	DetermineComponentSpace (const RGBAPixel< PixelValueType > &)
ComponentSpaceType	DetermineComponentSpace (const DiffusionTensor3D< PixelValueType > &)
template<typename PixelT >
ComponentSpaceType	DetermineComponentSpace (const PixelT &)
virtual void	GenerateData () override
virtual void	GenerateInputRequestedRegion () override
virtual bool	Halt ()
virtual void	Initialize ()
virtual void	InitializeIteration ()
virtual void	InitializePatchWeights ()
	PatchBasedDenoisingBaseImageFilter ()
virtual void	PostProcessOutput ()
virtual void	PreProcessInput ()
virtual void	PrintSelf (std::ostream &os, Indent indent) const override
virtual void	SetElapsedIterations (unsigned int _arg)
virtual bool	ThreadedHalt (void *)
	~PatchBasedDenoisingBaseImageFilter ()
Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
	ImageToImageFilter ()
virtual void	VerifyInputInformation () override
	~ImageToImageFilter ()
void	PushBackInput (const DataObject *input) override
void	PushFrontInput (const DataObject *input) override
Protected Member Functions inherited from itk::ImageSource< TOutputImage >
virtual void	AfterThreadedGenerateData ()
virtual void	AllocateOutputs ()
virtual void	BeforeThreadedGenerateData ()
virtual const ImageRegionSplitterBase *	GetImageRegionSplitter () const
	ImageSource ()
virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)
virtual void	ThreadedGenerateData (const OutputImageRegionType &outputRegionForThread, ThreadIdType threadId)
virtual	~ImageSource ()
Protected Member Functions inherited from itk::ProcessObject
virtual void	AddInput (DataObject *input)
virtual void	AddOutput (DataObject *output)
bool	AddRequiredInputName (const DataObjectIdentifierType &)
bool	AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
virtual void	CacheInputReleaseDataFlags ()
virtual void	GenerateOutputInformation ()
virtual void	GenerateOutputRequestedRegion (DataObject *output)
DataObject *	GetInput (const DataObjectIdentifierType &key)
const DataObject *	GetInput (const DataObjectIdentifierType &key) const
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs () const
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs () const
bool	IsIndexedInputName (const DataObjectIdentifierType &) const
bool	IsIndexedOutputName (const DataObjectIdentifierType &) const
bool	IsRequiredInputName (const DataObjectIdentifierType &) const
	itkLegacyMacro (virtual void RemoveOutput(DataObject *output))
	itkLegacyMacro (void SetNumberOfOutputs(DataObjectPointerArraySizeType num))
	itkLegacyMacro (virtual void RemoveInput(DataObject *input))
	itkLegacyMacro (void SetNumberOfInputs(DataObjectPointerArraySizeType num))
DataObjectPointerArraySizeType	MakeIndexFromInputName (const DataObjectIdentifierType &name) const
DataObjectPointerArraySizeType	MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
DataObjectIdentifierType	MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
DataObjectIdentifierType	MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
	ProcessObject ()
virtual void	PropagateResetPipeline ()
virtual void	ReleaseInputs ()
virtual void	RemoveInput (const DataObjectIdentifierType &key)
virtual void	RemoveInput (DataObjectPointerArraySizeType)
virtual void	RemoveOutput (const DataObjectIdentifierType &key)
virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)
bool	RemoveRequiredInputName (const DataObjectIdentifierType &)
virtual void	RestoreInputReleaseDataFlags ()
virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void	SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
virtual void	SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
virtual void	SetOutput (const DataObjectIdentifierType &key, DataObject *output)
virtual void	SetPrimaryInput (DataObject *input)
virtual void	SetPrimaryOutput (DataObject *output)
void	SetRequiredInputNames (const NameArray &)
virtual void	VerifyPreconditions ()
	~ProcessObject ()
DataObject *	GetInput (DataObjectPointerArraySizeType idx)
const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryInput ()
const DataObject *	GetPrimaryInput () const
virtual void	SetPrimaryInputName (const DataObjectIdentifierType &key)
virtual const char *	GetPrimaryInputName (void) const
DataObject *	GetOutput (const DataObjectIdentifierType &key)
const DataObject *	GetOutput (const DataObjectIdentifierType &key) const
virtual void	SetPrimaryOutputName (const DataObjectIdentifierType &key)
virtual const char *	GetPrimaryOutputName (void) const
DataObject *	GetOutput (DataObjectPointerArraySizeType idx)
const DataObject *	GetOutput (DataObjectPointerArraySizeType idx) const
DataObject *	GetPrimaryOutput ()
const DataObject *	GetPrimaryOutput () const
Protected Member Functions inherited from itk::Object
	Object ()
bool	PrintObservers (std::ostream &os, Indent indent) const
virtual void	SetTimeStamp (const TimeStamp &time)
virtual	~Object ()
Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()

Protected Attributes
bool	m_AlwaysTreatComponentsAsEuclidean
ComponentSpaceType	m_ComponentSpace
unsigned int	m_ElapsedIterations
const InputImageType *	m_InputImage
bool	m_KernelBandwidthEstimation
unsigned int	m_KernelBandwidthUpdateFrequency
bool	m_ManualReinitialization
NoiseModelType	m_NoiseModel
double	m_NoiseModelFidelityWeight
unsigned int	m_NumberOfIterations
OutputImageType *	m_OutputImage
unsigned int	m_PatchRadius
PatchWeightsType	m_PatchWeights
double	m_SmoothingWeight
Protected Attributes inherited from itk::ProcessObject
TimeStamp	m_OutputInformationMTime
bool	m_Updating
Protected Attributes inherited from itk::LightObject
AtomicInt< int >	m_ReferenceCount

Private Member Functions
void	operator= (const Self &) ITK_DELETE_FUNCTION
	PatchBasedDenoisingBaseImageFilter (const Self &) ITK_DELETE_FUNCTION

Private Attributes
FilterStateType	m_State

Additional Inherited Members
Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOff ()
static void	GlobalWarningDisplayOn ()
static Pointer	New ()
static void	SetGlobalWarningDisplay (bool flag)
Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()
static Pointer	New ()
Protected Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage >
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(OutputImageDimension), itkGetStaticConstMacro(InputImageDimension) >	InputToOutputRegionCopierType
typedef ImageToImageFilterDetail::ImageRegionCopier < itkGetStaticConstMacro(InputImageDimension), itkGetStaticConstMacro(OutputImageDimension) >	OutputToInputRegionCopierType
Static Protected Member Functions inherited from itk::ImageSource< TOutputImage >
static const ImageRegionSplitterBase *	GetGlobalDefaultSplitter ()
static ITK_THREAD_RETURN_TYPE	ThreaderCallback (void *arg)

Member Typedef Documentation

template<typename TInputImage , typename TOutputImage >

typedef ZeroFluxNeumannBoundaryCondition<OutputImageType> itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::BoundaryConditionType

This data structure type is used for efficiently accessing patch values from the image data structure.

Definition at line 142 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

typedef SmartPointer<const Self> itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::ConstPointer

Definition at line 102 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

typedef ConstNeighborhoodIterator< InputImageType, BoundaryConditionType > itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::InputImagePatchIterator

Definition at line 147 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

typedef TInputImage itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::InputImageType

Input and output image types.

Definition at line 105 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

typedef InputImageType::PixelType itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::InputPixelType

Type definition for the input and output pixel types. Output pixel type will be used in computations.

Definition at line 118 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

typedef typename::itk::Statistics::ImageToNeighborhoodSampleAdaptor< OutputImageType, BoundaryConditionType > itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::ListAdaptorType

Definition at line 144 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

typedef TOutputImage itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::OutputImageType

Definition at line 109 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

typedef OutputImageType::PixelType itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::OutputPixelType

Definition at line 119 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

typedef ListAdaptorType::NeighborhoodRadiusType itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::PatchRadiusType

Definition at line 145 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

typedef Array<float> itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::PatchWeightsType

This data structure type is used to store the weights (mask) for pixels in a patch in order to make the patch more isotropic and less rectangular.

Definition at line 137 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

typedef OutputPixelType itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::PixelType

Definition at line 120 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

typedef NumericTraits<PixelType>::ValueType itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::PixelValueType

Definition at line 121 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

typedef SmartPointer<Self> itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::Pointer

Definition at line 101 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

typedef PatchBasedDenoisingBaseImageFilter itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::Self

Standard class typedefs.

Definition at line 99 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

typedef ImageToImageFilter<TInputImage, TOutputImage> itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::Superclass

Definition at line 100 of file itkPatchBasedDenoisingBaseImageFilter.h.

Member Enumeration Documentation

template<typename TInputImage , typename TOutputImage >

enum itk::PatchBasedDenoisingBaseImageFilter::ComponentSpaceType

Type definition to determine which space to do calculations in. TODO add comment about why no noise model can be used for RIEMANNIAN space

Enumerator
EUCLIDEAN
RIEMANNIAN

Definition at line 130 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

enum itk::PatchBasedDenoisingBaseImageFilter::FilterStateType

Enumerator
UNINITIALIZED
INITIALIZED

Definition at line 132 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

enum itk::PatchBasedDenoisingBaseImageFilter::NoiseModelType

Type definition for selecting the noise model.

Enumerator
NOMODEL
GAUSSIAN
RICIAN
POISSON

Definition at line 124 of file itkPatchBasedDenoisingBaseImageFilter.h.

Constructor & Destructor Documentation

template<typename TInputImage , typename TOutputImage >

itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::PatchBasedDenoisingBaseImageFilter ( )

protected

template<typename TInputImage , typename TOutputImage >

itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::~PatchBasedDenoisingBaseImageFilter ( )

protected

template<typename TInputImage , typename TOutputImage >

itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::PatchBasedDenoisingBaseImageFilter ( const Self &  )

private

Member Function Documentation

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::AllocateUpdateBuffer ( )

protectedpure virtual

Allocate memory for a temporary update container in the subclass.

Implemented in itk::PatchBasedDenoisingImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::AlwaysTreatComponentsAsEuclideanOff ( )

virtual

Set/Get flag indicating whether all components should always be treated as if they are in euclidean space regardless of pixel type. Defaults to false.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::AlwaysTreatComponentsAsEuclideanOn ( )

virtual

Set/Get flag indicating whether all components should always be treated as if they are in euclidean space regardless of pixel type. Defaults to false.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::ApplyUpdate ( )

protectedpure virtual

Implemented in itk::PatchBasedDenoisingImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::ComputeImageUpdate ( )

protectedpure virtual

Perform one iteration of image denoising.

Implemented in itk::PatchBasedDenoisingImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::ComputeKernelBandwidthUpdate ( )

protectedpure virtual

Automatically estimate kernel bandwidth from the image data.

Implemented in itk::PatchBasedDenoisingImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::CopyInputToOutput ( )

protectedpure virtual

Implemented in itk::PatchBasedDenoisingImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename TOutputImage >

ComponentSpaceType itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::DetermineComponentSpace ( const RGBPixel< PixelValueType > &  )

inlineprotected

Determine the component space based on pixel type

Definition at line 300 of file itkPatchBasedDenoisingBaseImageFilter.h.

References itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::EUCLIDEAN.

template<typename TInputImage , typename TOutputImage >

ComponentSpaceType itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::DetermineComponentSpace ( const RGBAPixel< PixelValueType > &  )

inlineprotected

Definition at line 305 of file itkPatchBasedDenoisingBaseImageFilter.h.

References itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::EUCLIDEAN.

template<typename TInputImage , typename TOutputImage >

ComponentSpaceType itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::DetermineComponentSpace ( const DiffusionTensor3D< PixelValueType > &  )

inlineprotected

Definition at line 310 of file itkPatchBasedDenoisingBaseImageFilter.h.

References itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::RIEMANNIAN.

template<typename TInputImage , typename TOutputImage >

template<typename PixelT >

ComponentSpaceType itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::DetermineComponentSpace ( const PixelT &  )

inlineprotected

Definition at line 316 of file itkPatchBasedDenoisingBaseImageFilter.h.

References itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::EUCLIDEAN.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::GenerateData ( )

overrideprotectedvirtual

A version of GenerateData() specific for image processing filters. This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling ThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter an be threaded, it should NOT provide a GenerateData() method but should provide a ThreadedGenerateData() instead.

See Also

ThreadedGenerateData()

Reimplemented from itk::ImageSource< TOutputImage >.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::GenerateInputRequestedRegion ( )

overrideprotectedvirtual

What is the input requested region that is required to produce the output requested region? The base assumption for image processing filters is that the input requested region can be set to match the output requested region. If a filter requires more input (for instance a filter that uses neighborhoods needs more input than output to avoid introducing artificial boundary conditions) or less input (for instance a magnify filter) will have to override this method. In doing so, it should call its superclass' implementation as its first step. Note that imaging filters operate differently than the classes to this point in the class hierarchy. Up till now, the base assumption has been that the largest possible region will be requested of the input.

This implementation of GenerateInputRequestedRegion() only processes the inputs that are a subclass of the ImageBase<InputImageDimension>. If an input is another type of DataObject (including an Image of a different dimension), they are skipped by this method. The subclasses of ImageToImageFilter are responsible for providing an implementation of GenerateInputRequestedRegion() when there are multiple inputs of different types.

See Also

ProcessObject::GenerateInputRequestedRegion(), ImageSource::GenerateInputRequestedRegion()

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Reimplemented in itk::PatchBasedDenoisingImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename TOutputImage >

virtual bool itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::GetAlwaysTreatComponentsAsEuclidean ( ) const

virtual

Set/Get flag indicating whether all components should always be treated as if they are in euclidean space regardless of pixel type. Defaults to false.

template<typename TInputImage , typename TOutputImage >

virtual const unsigned int& itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::GetElapsedIterations ( ) const

virtual

Get the number of elapsed iterations of the filter.

template<typename TInputImage , typename TOutputImage >

virtual bool itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::GetKernelBandwidthEstimation ( ) const

virtual

Set/Get flag indicating whether kernel-bandwidth should be estimated automatically from the image data. Defaults to false.

template<typename TInputImage , typename TOutputImage >

virtual unsigned int itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::GetKernelBandwidthUpdateFrequency ( ) const

virtual

Set/Get the update frequency for the kernel bandwidth estimation. An optimal bandwidth will be re-estimated based on the denoised image after every 'n' iterations. Must be a positive integer. Defaults to 3, i.e. bandwidth updated after every 3 denoising iteration.

template<typename TInputImage , typename TOutputImage >

virtual const bool& itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::GetManualReinitialization ( ) const

virtual

Require the filter to be manually reinitialized (by calling SetStateToUninitialized()

template<typename TInputImage , typename TOutputImage >

virtual const char* itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Reimplemented in itk::PatchBasedDenoisingImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename TOutputImage >

virtual NoiseModelType itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::GetNoiseModel ( ) const

virtual

Set/Get the noise model type. Defaults to NOMODEL. To use the noise model during denoising, NoiseModelFidelityWeight must be positive.

template<typename TInputImage , typename TOutputImage >

virtual double itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::GetNoiseModelFidelityWeight ( ) const

virtual

Set/Get the weight on the fidelity term (penalizes deviations from the noisy data). This option is used when a noise model is specified. This weight controls the balance between the smoothing and the closeness to the noisy data.

template<typename TInputImage , typename TOutputImage >

virtual const unsigned int& itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::GetNumberOfIterations ( ) const

virtual

Set/Get the number of denoising iterations to perform. Must be a positive integer. Defaults to 1.

template<typename TInputImage , typename TOutputImage >

PatchRadiusType itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::GetPatchDiameterInVoxels

(

)

const

template<typename TInputImage , typename TOutputImage >

PatchRadiusType::SizeValueType itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::GetPatchLengthInVoxels

(

)

const

template<typename TInputImage , typename TOutputImage >

virtual unsigned int itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::GetPatchRadius ( ) const

virtual

Set/Get the patch radius specified in physical coordinates. Patch radius is preferably set to an even number. Currently, only isotropic patches in physical space are allowed; patches can be anisotropic in voxel space.

template<typename TInputImage , typename TOutputImage >

PatchRadiusType itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::GetPatchRadiusInVoxels

(

)

const

template<typename TInputImage , typename TOutputImage >

PatchWeightsType itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::GetPatchWeights

(

)

const

template<typename TInputImage , typename TOutputImage >

virtual double itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::GetSmoothingWeight ( ) const

virtual

Set/Get the weight on the smoothing term. This option is used when a noise model is specified. This weight controls the balance between the smoothing and the closeness to the noisy data.

template<typename TInputImage , typename TOutputImage >

virtual const FilterStateType& itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::GetState ( ) const

virtual

Set/Get the state of the filter.

template<typename TInputImage , typename TOutputImage >

virtual bool itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::Halt ( )

protectedvirtual

Check and indicate whether to continue iterations or stop.

Referenced by itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::ThreadedHalt().

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::Initialize ( void  )

inlineprotectedvirtual

Reimplemented in itk::PatchBasedDenoisingImageFilter< TInputImage, TOutputImage >.

Definition at line 270 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::InitializeIteration ( )

inlineprotectedvirtual

Reimplemented in itk::PatchBasedDenoisingImageFilter< TInputImage, TOutputImage >.

Definition at line 277 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::InitializePatchWeights ( )

protectedvirtual

Allocate memory and initialize patch weights.

Reimplemented in itk::PatchBasedDenoisingImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::KernelBandwidthEstimationOff ( )

virtual

Set/Get flag indicating whether kernel-bandwidth should be estimated automatically from the image data. Defaults to false.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::KernelBandwidthEstimationOn ( )

virtual

Set/Get flag indicating whether kernel-bandwidth should be estimated automatically from the image data. Defaults to false.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::ManualReinitializationOff ( )

virtual

Require the filter to be manually reinitialized (by calling SetStateToUninitialized()

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::ManualReinitializationOn ( )

virtual

Require the filter to be manually reinitialized (by calling SetStateToUninitialized()

template<typename TInputImage , typename TOutputImage >

void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::operator= ( const Self &  )

private

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::PostProcessOutput ( )

inlineprotectedvirtual

Reimplemented in itk::PatchBasedDenoisingImageFilter< TInputImage, TOutputImage >.

Definition at line 287 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::PreProcessInput ( )

inlineprotectedvirtual

Definition at line 275 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.

Reimplemented in itk::PatchBasedDenoisingImageFilter< TInputImage, TOutputImage >.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::SetAlwaysTreatComponentsAsEuclidean ( bool  _arg )

virtual

Set/Get flag indicating whether all components should always be treated as if they are in euclidean space regardless of pixel type. Defaults to false.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::SetElapsedIterations ( unsigned int  _arg )

protectedvirtual

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::SetKernelBandwidthEstimation ( bool  _arg )

virtual

Set/Get flag indicating whether kernel-bandwidth should be estimated automatically from the image data. Defaults to false.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::SetKernelBandwidthUpdateFrequency ( unsigned int  _arg )

virtual

Set/Get the update frequency for the kernel bandwidth estimation. An optimal bandwidth will be re-estimated based on the denoised image after every 'n' iterations. Must be a positive integer. Defaults to 3, i.e. bandwidth updated after every 3 denoising iteration.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::SetManualReinitialization ( bool  _arg )

virtual

Require the filter to be manually reinitialized (by calling SetStateToUninitialized()

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::SetNoiseModel ( NoiseModelType  _arg )

virtual

Set/Get the noise model type. Defaults to NOMODEL. To use the noise model during denoising, NoiseModelFidelityWeight must be positive.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::SetNoiseModelFidelityWeight ( double  _arg )

virtual

Set/Get the weight on the fidelity term (penalizes deviations from the noisy data). This option is used when a noise model is specified. This weight controls the balance between the smoothing and the closeness to the noisy data.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::SetNumberOfIterations ( unsigned int  _arg )

virtual

Set/Get the number of denoising iterations to perform. Must be a positive integer. Defaults to 1.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::SetPatchRadius ( unsigned int  _arg )

virtual

Set/Get the patch radius specified in physical coordinates. Patch radius is preferably set to an even number. Currently, only isotropic patches in physical space are allowed; patches can be anisotropic in voxel space.

template<typename TInputImage , typename TOutputImage >

void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::SetPatchWeights

(

const PatchWeightsType &

weights

)

Set/Get the patch weights, or mask, that make the patch more isotropic (less rectangular). This function allows the user to set arbitrary patch weights by providing a 1-D array of weights.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::SetSmoothingWeight ( double  _arg )

virtual

Set/Get the weight on the smoothing term. This option is used when a noise model is specified. This weight controls the balance between the smoothing and the closeness to the noisy data.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::SetState ( FilterStateType  _arg )

virtual

Set/Get the state of the filter.

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::SetStateToInitialized ( )

virtual

Set the state of the filter to INITIALIZED

template<typename TInputImage , typename TOutputImage >

virtual void itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::SetStateToUninitialized ( )

virtual

Set the state of the filter to UNINITIALIZED

template<typename TInputImage , typename TOutputImage >

virtual bool itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::ThreadedHalt ( void *  )

inlineprotectedvirtual

Definition at line 292 of file itkPatchBasedDenoisingBaseImageFilter.h.

References itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::Halt().

Member Data Documentation

template<typename TInputImage , typename TOutputImage >

const unsigned int itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::ImageDimension = InputImageType::ImageDimension

static

Image dimension, assumed to be the same for input and output data.

Definition at line 113 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

bool itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::m_AlwaysTreatComponentsAsEuclidean

protected

Parameter indicating whether components should be treated as if they are in Euclidean space regardless of pixel type.

Definition at line 341 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

ComponentSpaceType itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::m_ComponentSpace

protected

Definition at line 342 of file itkPatchBasedDenoisingBaseImageFilter.h.

Referenced by itk::PatchBasedDenoisingImageFilter< TInputImage, TOutputImage >::AddUpdate(), itk::PatchBasedDenoisingImageFilter< TInputImage, TOutputImage >::ComputeDifferenceAndWeightedSquaredNorm(), and itk::PatchBasedDenoisingImageFilter< TInputImage, TOutputImage >::ComputeMinMax().

template<typename TInputImage , typename TOutputImage >

unsigned int itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::m_ElapsedIterations

protected

Definition at line 332 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

const InputImageType* itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::m_InputImage

protected

cache input and output pointer to get rid of thousands of calls to GetInput and GetOutput.

Definition at line 351 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

bool itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::m_KernelBandwidthEstimation

protected

Parameters that define the strategy for kernel-bandwidth estimation.

Definition at line 326 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

unsigned int itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::m_KernelBandwidthUpdateFrequency

protected

Definition at line 327 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

bool itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::m_ManualReinitialization

protected

Indicates whether the filter automatically resets to UNINITIALIZED state after completing, or whether filter must be manually reset

Definition at line 346 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

NoiseModelType itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::m_NoiseModel

protected

Parameters defining the usage of a specific noise model, if desired.

Definition at line 335 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

double itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::m_NoiseModelFidelityWeight

protected

Definition at line 337 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

unsigned int itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::m_NumberOfIterations

protected

Parameters that define the total number of denoising iterations to perform and those completed so far.

Definition at line 331 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

OutputImageType* itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::m_OutputImage

protected

Definition at line 352 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

unsigned int itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::m_PatchRadius

protected

Parameters that define patch size and patch weights (mask).

Definition at line 322 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

PatchWeightsType itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::m_PatchWeights

protected

Definition at line 323 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

double itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::m_SmoothingWeight

protected

Definition at line 336 of file itkPatchBasedDenoisingBaseImageFilter.h.

template<typename TInputImage , typename TOutputImage >

FilterStateType itk::PatchBasedDenoisingBaseImageFilter< TInputImage, TOutputImage >::m_State

private

State that the filter is in, i.e. UNINITIALIZED or INITIALIZED

Definition at line 359 of file itkPatchBasedDenoisingBaseImageFilter.h.

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The documentation for this class was generated from the following file:

• itkPatchBasedDenoisingBaseImageFilter.h