itkMIRegistrationFunction.h

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/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkMIRegistrationFunction_h
#define itkMIRegistrationFunction_h

#include "itkPDEDeformableRegistrationFunction.h"
#include "itkPoint.h"
#include "itkLinearInterpolateImageFunction.h"
#include "itkCentralDifferenceImageFunction.h"

namespace itk
{
template< typename TFixedImage, typename TMovingImage, typename TDisplacementField >
class MIRegistrationFunction:
  public PDEDeformableRegistrationFunction< TFixedImage,
                                            TMovingImage, TDisplacementField >
{
public:

  typedef MIRegistrationFunction Self;
  typedef PDEDeformableRegistrationFunction< TFixedImage,
                                             TMovingImage, TDisplacementField >    Superclass;
  typedef SmartPointer< Self >       Pointer;
  typedef SmartPointer< const Self > ConstPointer;

  itkNewMacro(Self);

  itkTypeMacro(MIRegistrationFunction,
               PDEDeformableRegistrationFunction);

  typedef typename Superclass::MovingImageType    MovingImageType;
  typedef typename Superclass::MovingImagePointer MovingImagePointer;

  typedef typename Superclass::FixedImageType    FixedImageType;
  typedef typename Superclass::FixedImagePointer FixedImagePointer;
  typedef typename FixedImageType::IndexType     IndexType;
  typedef typename FixedImageType::SizeType      SizeType;
  typedef typename FixedImageType::SpacingType   SpacingType;

  typedef typename Superclass::DisplacementFieldType DisplacementFieldType;
  typedef typename Superclass::DisplacementFieldTypePointer
  DisplacementFieldTypePointer;

  itkStaticConstMacro(ImageDimension, unsigned int, Superclass::ImageDimension);

  typedef typename Superclass::PixelType        PixelType;
  typedef typename Superclass::RadiusType       RadiusType;
  typedef typename Superclass::NeighborhoodType NeighborhoodType;
  typedef typename Superclass::FloatOffsetType  FloatOffsetType;
  typedef typename Superclass::TimeStepType     TimeStepType;

  typedef double                                                    CoordRepType;
  typedef InterpolateImageFunction< MovingImageType, CoordRepType > InterpolatorType;
  typedef typename InterpolatorType::Pointer                        InterpolatorPointer;
  typedef typename InterpolatorType::PointType                      PointType;
  typedef LinearInterpolateImageFunction< MovingImageType, CoordRepType >
  DefaultInterpolatorType;

  typedef CovariantVector< double, itkGetStaticConstMacro(ImageDimension) > CovariantVectorType;

  typedef CentralDifferenceImageFunction< FixedImageType > GradientCalculatorType;
  typedef typename GradientCalculatorType::Pointer         GradientCalculatorPointer;

  void SetMovingImageInterpolator(InterpolatorType *ptr)
  { m_MovingImageInterpolator = ptr; }

  InterpolatorType * GetMovingImageInterpolator(void)
  { return m_MovingImageInterpolator; }

  virtual TimeStepType ComputeGlobalTimeStep( void *itkNotUsed(GlobalData) ) const ITK_OVERRIDE
  { return m_TimeStep; }

  virtual void * GetGlobalDataPointer() const ITK_OVERRIDE
  {
    GlobalDataStruct *global = new GlobalDataStruct();

    return global;
  }

  virtual void ReleaseGlobalDataPointer(void *GlobalData) const ITK_OVERRIDE
  { delete (GlobalDataStruct *)GlobalData;  }

  virtual void InitializeIteration() ITK_OVERRIDE;

  virtual PixelType  ComputeUpdate( const NeighborhoodType & neighborhood,
                                    void *globalData,
                                    const FloatOffsetType & offset = FloatOffsetType(0.0) ) ITK_OVERRIDE;

  void SetMinNorm(float ts = 1.0) { m_Minnorm = ts; }

  void SetDoInverse(bool b = false) { m_DoInverse = b; }

protected:
  MIRegistrationFunction();
  ~MIRegistrationFunction() {}
  void PrintSelf(std::ostream & os, Indent indent) const ITK_OVERRIDE;

  typedef ConstNeighborhoodIterator< FixedImageType > FixedImageNeighborhoodIteratorType;

  struct GlobalDataStruct {
    FixedImageNeighborhoodIteratorType m_FixedImageIterator;
  };

  TimeStepType m_TimeStep;

private:
  MIRegistrationFunction(const Self &) ITK_DELETE_FUNCTION;
  void operator=(const Self &) ITK_DELETE_FUNCTION;

  SpacingType m_FixedImageSpacing;
  PointType   m_FixedImageOrigin;

  GradientCalculatorPointer m_FixedImageGradientCalculator;

  GradientCalculatorPointer m_MovingImageGradientCalculator;

  InterpolatorPointer m_MovingImageInterpolator;

  double m_DenominatorThreshold;

  double m_IntensityDifferenceThreshold;

  mutable double m_MetricTotal;

  unsigned int m_NumberOfSamples;
  unsigned int m_NumberOfBins;
  float        m_Minnorm;

  bool m_DoInverse;
};
} // end namespace itk

#ifndef ITK_MANUAL_INSTANTIATION
#include "itkMIRegistrationFunction.hxx"
#endif

#endif