ITK
5.0.0
Insight Segmentation and Registration Toolkit
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#include <itkLabelMapMaskImageFilter.h>
Mask and image with a LabelMap.
LabelMapMaskImageFilter mask the content of an input image according to the content of the input LabelMap. The masked pixel of the input image are set to the BackgroundValue. LabelMapMaskImageFilter can keep the input image for one label only, with Negated = false (the default) or it can mask the input image for a single label, when Negated equals true. In Both cases, the label is set with SetLabel().
This implementation was taken from the Insight Journal paper: https://hdl.handle.net/1926/584 or http://www.insight-journal.org/browse/publication/176
Definition at line 46 of file itkLabelMapMaskImageFilter.h.
Public Types | |
using | ConstPointer = SmartPointer< const Self > |
using | IndexType = typename OutputImageType::IndexType |
using | InputImageConstPointer = typename InputImageType::ConstPointer |
using | InputImagePixelType = typename InputImageType::PixelType |
using | InputImagePointer = typename InputImageType::Pointer |
using | InputImageRegionType = typename InputImageType::RegionType |
using | InputImageType = TInputImage |
using | LabelObjectType = typename InputImageType::LabelObjectType |
using | LabelType = typename LabelObjectType::LabelType |
using | LengthType = typename LabelObjectType::LengthType |
using | OutputImageConstPointer = typename OutputImageType::ConstPointer |
using | OutputImagePixelType = typename OutputImageType::PixelType |
using | OutputImagePointer = typename OutputImageType::Pointer |
using | OutputImageRegionType = typename OutputImageType::RegionType |
using | OutputImageType = TOutputImage |
using | Pointer = SmartPointer< Self > |
using | RegionType = typename OutputImageType::RegionType |
using | Self = LabelMapMaskImageFilter |
using | SizeType = typename OutputImageType::SizeType |
using | Superclass = LabelMapFilter< TInputImage, TOutputImage > |
Public Types inherited from itk::LabelMapFilter< TInputImage, TOutputImage > | |
using | ConstPointer = SmartPointer< const Self > |
using | InputImageConstPointer = typename Superclass::InputImageConstPointer |
using | InputImagePixelType = typename Superclass::InputImagePixelType |
using | InputImagePointer = typename Superclass::InputImagePointer |
using | InputImageRegionType = typename Superclass::InputImageRegionType |
using | InputImageType = typename Superclass::InputImageType |
using | LabelObjectType = typename InputImageType::LabelObjectType |
using | OutputImageConstPointer = typename OutputImageType::ConstPointer |
using | OutputImagePixelType = typename OutputImageType::PixelType |
using | OutputImagePointer = typename OutputImageType::Pointer |
using | OutputImageRegionType = typename OutputImageType::RegionType |
using | OutputImageType = TOutputImage |
using | Pointer = SmartPointer< Self > |
using | Self = LabelMapFilter |
using | Superclass = ImageToImageFilter< TInputImage, TOutputImage > |
Public Types inherited from itk::ImageToImageFilter< TInputImage, TOutputImage > | |
using | ConstPointer = SmartPointer< const Self > |
using | InputImageConstPointer = typename InputImageType::ConstPointer |
using | InputImagePixelType = typename InputImageType::PixelType |
using | InputImagePointer = typename InputImageType::Pointer |
using | InputImageRegionType = typename InputImageType::RegionType |
using | InputImageType = TInputImage |
using | OutputImagePixelType = typename Superclass::OutputImagePixelType |
using | OutputImageRegionType = typename Superclass::OutputImageRegionType |
using | Pointer = SmartPointer< Self > |
using | Self = ImageToImageFilter |
using | Superclass = ImageSource< TOutputImage > |
Public Types inherited from itk::ImageSource< TOutputImage > | |
using | ConstPointer = SmartPointer< const Self > |
using | DataObjectIdentifierType = Superclass::DataObjectIdentifierType |
using | DataObjectPointer = DataObject::Pointer |
using | DataObjectPointerArraySizeType = Superclass::DataObjectPointerArraySizeType |
using | OutputImagePixelType = typename OutputImageType::PixelType |
using | OutputImagePointer = typename OutputImageType::Pointer |
using | OutputImageRegionType = typename OutputImageType::RegionType |
using | OutputImageType = TOutputImage |
using | Pointer = SmartPointer< Self > |
using | Self = ImageSource |
using | Superclass = ProcessObject |
Public Types inherited from itk::ProcessObject | |
using | ConstPointer = SmartPointer< const Self > |
using | DataObjectIdentifierType = DataObject::DataObjectIdentifierType |
using | DataObjectPointer = DataObject::Pointer |
using | DataObjectPointerArray = std::vector< DataObjectPointer > |
using | DataObjectPointerArraySizeType = DataObjectPointerArray::size_type |
using | MultiThreaderType = MultiThreaderBase |
using | NameArray = std::vector< DataObjectIdentifierType > |
using | Pointer = SmartPointer< Self > |
using | Self = ProcessObject |
using | Superclass = Object |
Public Types inherited from itk::Object | |
using | ConstPointer = SmartPointer< const Self > |
using | Pointer = SmartPointer< Self > |
using | Self = Object |
using | Superclass = LightObject |
Public Types inherited from itk::LightObject | |
using | ConstPointer = SmartPointer< const Self > |
using | Pointer = SmartPointer< Self > |
using | Self = LightObject |
Static Public Member Functions | |
static Pointer | New () |
Static Public Member Functions inherited from itk::LabelMapFilter< TInputImage, TOutputImage > | |
static Pointer | New () |
Static Public Member Functions inherited from itk::Object | |
static bool | GetGlobalWarningDisplay () |
static void | GlobalWarningDisplayOff () |
static void | GlobalWarningDisplayOn () |
static Pointer | New () |
static void | SetGlobalWarningDisplay (bool flag) |
Static Public Member Functions inherited from itk::LightObject | |
static void | BreakOnError () |
static Pointer | New () |
Static Public Attributes | |
static constexpr unsigned int | ImageDimension = TOutputImage::ImageDimension |
static constexpr unsigned int | InputImageDimension = TInputImage::ImageDimension |
static constexpr unsigned int | OutputImageDimension = TOutputImage::ImageDimension |
Static Public Attributes inherited from itk::LabelMapFilter< TInputImage, TOutputImage > | |
static constexpr unsigned int | InputImageDimension = TInputImage::ImageDimension |
static constexpr unsigned int | OutputImageDimension = TOutputImage::ImageDimension |
Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, TOutputImage > | |
static constexpr unsigned int | InputImageDimension = TInputImage::ImageDimension |
static constexpr unsigned int | OutputImageDimension = TOutputImage::ImageDimension |
Static Public Attributes inherited from itk::ImageSource< TOutputImage > | |
static constexpr unsigned int | OutputImageDimension = TOutputImage::ImageDimension |
Private Attributes | |
OutputImagePixelType | m_BackgroundValue |
bool | m_Crop { false } |
SizeType | m_CropBorder |
TimeStamp | m_CropTimeStamp |
InputImagePixelType | m_Label |
bool | m_Negated { false } |
using itk::LabelMapMaskImageFilter< TInputImage, TOutputImage >::ConstPointer = SmartPointer<const Self> |
Definition at line 56 of file itkLabelMapMaskImageFilter.h.
using itk::LabelMapMaskImageFilter< TInputImage, TOutputImage >::IndexType = typename OutputImageType::IndexType |
Definition at line 73 of file itkLabelMapMaskImageFilter.h.
using itk::LabelMapMaskImageFilter< TInputImage, TOutputImage >::InputImageConstPointer = typename InputImageType::ConstPointer |
Definition at line 62 of file itkLabelMapMaskImageFilter.h.
using itk::LabelMapMaskImageFilter< TInputImage, TOutputImage >::InputImagePixelType = typename InputImageType::PixelType |
Definition at line 64 of file itkLabelMapMaskImageFilter.h.
using itk::LabelMapMaskImageFilter< TInputImage, TOutputImage >::InputImagePointer = typename InputImageType::Pointer |
Definition at line 61 of file itkLabelMapMaskImageFilter.h.
using itk::LabelMapMaskImageFilter< TInputImage, TOutputImage >::InputImageRegionType = typename InputImageType::RegionType |
Definition at line 63 of file itkLabelMapMaskImageFilter.h.
using itk::LabelMapMaskImageFilter< TInputImage, TOutputImage >::InputImageType = TInputImage |
Some convenient type alias.
Definition at line 59 of file itkLabelMapMaskImageFilter.h.
using itk::LabelMapMaskImageFilter< TInputImage, TOutputImage >::LabelObjectType = typename InputImageType::LabelObjectType |
Definition at line 65 of file itkLabelMapMaskImageFilter.h.
using itk::LabelMapMaskImageFilter< TInputImage, TOutputImage >::LabelType = typename LabelObjectType::LabelType |
Definition at line 66 of file itkLabelMapMaskImageFilter.h.
using itk::LabelMapMaskImageFilter< TInputImage, TOutputImage >::LengthType = typename LabelObjectType::LengthType |
Definition at line 67 of file itkLabelMapMaskImageFilter.h.
using itk::LabelMapMaskImageFilter< TInputImage, TOutputImage >::OutputImageConstPointer = typename OutputImageType::ConstPointer |
Definition at line 70 of file itkLabelMapMaskImageFilter.h.
using itk::LabelMapMaskImageFilter< TInputImage, TOutputImage >::OutputImagePixelType = typename OutputImageType::PixelType |
Definition at line 72 of file itkLabelMapMaskImageFilter.h.
using itk::LabelMapMaskImageFilter< TInputImage, TOutputImage >::OutputImagePointer = typename OutputImageType::Pointer |
Definition at line 69 of file itkLabelMapMaskImageFilter.h.
using itk::LabelMapMaskImageFilter< TInputImage, TOutputImage >::OutputImageRegionType = typename OutputImageType::RegionType |
Definition at line 71 of file itkLabelMapMaskImageFilter.h.
using itk::LabelMapMaskImageFilter< TInputImage, TOutputImage >::OutputImageType = TOutputImage |
Definition at line 60 of file itkLabelMapMaskImageFilter.h.
using itk::LabelMapMaskImageFilter< TInputImage, TOutputImage >::Pointer = SmartPointer<Self> |
Definition at line 55 of file itkLabelMapMaskImageFilter.h.
using itk::LabelMapMaskImageFilter< TInputImage, TOutputImage >::RegionType = typename OutputImageType::RegionType |
Definition at line 75 of file itkLabelMapMaskImageFilter.h.
using itk::LabelMapMaskImageFilter< TInputImage, TOutputImage >::Self = LabelMapMaskImageFilter |
Standard class type aliases.
Definition at line 53 of file itkLabelMapMaskImageFilter.h.
using itk::LabelMapMaskImageFilter< TInputImage, TOutputImage >::SizeType = typename OutputImageType::SizeType |
Definition at line 74 of file itkLabelMapMaskImageFilter.h.
using itk::LabelMapMaskImageFilter< TInputImage, TOutputImage >::Superclass = LabelMapFilter<TInputImage, TOutputImage> |
Definition at line 54 of file itkLabelMapMaskImageFilter.h.
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Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::LabelMapFilter< TInputImage, TOutputImage >.
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Set/Get whether the image size should be adjusted to the masked image or not.
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Set/Get whether the image size should be adjusted to the masked image or not.
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If an imaging filter can be implemented as a multithreaded algorithm, the filter will provide an implementation of ThreadedGenerateData() or DynamicThreadedGenerateData(). This superclass will automatically split the output image into a number of pieces, spawn multiple threads, and call (Dynamic)ThreadedGenerateData() in each thread. Prior to spawning threads, the BeforeThreadedGenerateData() method is called. After all the threads have completed, the AfterThreadedGenerateData() method is called. If an image processing filter cannot support threading, that filter should provide an implementation of the GenerateData() method instead of providing an implementation of (Dynamic)ThreadedGenerateData(). If a filter provides a GenerateData() method as its implementation, then the filter is responsible for allocating the output data. If a filter provides a (Dynamic)ThreadedGenerateData() method as its implementation, then the output memory will allocated automatically by this superclass. The (Dynamic)ThreadedGenerateData() method should only produce the output specified by "outputThreadRegion" parameter. (Dynamic)ThreadedGenerateData() cannot write to any other portion of the output image (as this is responsibility of a different thread).
DynamicThreadedGenerateData() is the newer variant without threadId, and is the preferred signature, which is called by default. This variant can split the requested region into different number of pieces depending on current multi-processing load, which allows better load balancing. The non-dynamic (also known as classic) ThreadedGenerateData() signature has threadId, and number of pieces to be split into is known in advance. It is activated by calling this->DynamicMultiThreadingOff(); in derived class constructor. It should be used when the multi-threaded algorithm needs to pre-allocate some data structure with size dependent on the number of pieces (also known as chunks, work units, and sometimes also incorrectly as threads). Only PlatformMultiThreader guarantees that each piece will be processed in its own specific thread. Pool and TBB multi-threaders maintain a pool of threads (normally equal to number of processing cores) which they use to process the pieces. This normally results in a single thread being reused to process multiple work units.
Reimplemented from itk::LabelMapFilter< TInputImage, TOutputImage >.
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LabelMapMaskImageFilter will produce the entire output.
Reimplemented from itk::LabelMapFilter< TInputImage, TOutputImage >.
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A version of GenerateData() specific for image processing filters. This implementation will split the processing across multiple threads. The buffer is allocated by this method. Then the BeforeThreadedGenerateData() method is called (if provided). Then, a series of threads are spawned each calling DynamicThreadedGenerateData(). After all the threads have completed processing, the AfterThreadedGenerateData() method is called (if provided). If an image processing filter cannot be threaded, the filter should provide an implementation of GenerateData(). That implementation is responsible for allocating the output buffer. If a filter can be threaded, it should NOT provide a GenerateData() method but should provide a DynamicThreadedGenerateData() instead.
Reimplemented from itk::ImageSource< TOutputImage >.
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LabelMapMaskImageFilter needs the entire input be available. Thus, it needs to provide an implementation of GenerateInputRequestedRegion().
Reimplemented from itk::LabelMapFilter< TInputImage, TOutputImage >.
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Generate the information describing the output data. The default implementation of this method will copy information from the input to the output. A filter may override this method if its output will have different information than its input. For instance, a filter that shrinks an image will need to provide an implementation for this method that changes the spacing of the pixels. Such filters should call their superclass' implementation of this method prior to changing the information values they need (i.e. GenerateOutputInformation() should call Superclass::GenerateOutputInformation() prior to changing the information.
Reimplemented from itk::ProcessObject.
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Set/Get the value used as "background" in the output image. Defaults to NumericTraits<PixelType>::ZeroValue().
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Set/Get whether the image size should be adjusted to the masked image or not.
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Set/Get the boder added to the mask before the crop. The default is 0 on all the axes.
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Get the feature image
Definition at line 97 of file itkLabelMapMaskImageFilter.h.
References itk::ProcessObject::GetInput().
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The label to mask or to not mask, depending on the value of the Negated ivar.
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Runtime information support.
Reimplemented from itk::LabelMapFilter< TInputImage, TOutputImage >.
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Set/Get whether the Label should be masked or not.
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Set/Get whether the Label should be masked or not.
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Set/Get whether the Label should be masked or not.
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Standard New method.
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Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.
Reimplemented from itk::ImageToImageFilter< TInputImage, TOutputImage >.
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Set/Get the value used as "background" in the output image. Defaults to NumericTraits<PixelType>::ZeroValue().
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Set/Get whether the image size should be adjusted to the masked image or not.
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Set/Get the boder added to the mask before the crop. The default is 0 on all the axes.
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Set the feature image
Definition at line 90 of file itkLabelMapMaskImageFilter.h.
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Set the input image
Definition at line 103 of file itkLabelMapMaskImageFilter.h.
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Set the feature image
Definition at line 109 of file itkLabelMapMaskImageFilter.h.
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The label to mask or to not mask, depending on the value of the Negated ivar.
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Set/Get whether the Label should be masked or not.
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Definition at line 172 of file itkLabelMapMaskImageFilter.h.
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Reimplemented from itk::LabelMapFilter< TInputImage, TOutputImage >.
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Definition at line 81 of file itkLabelMapMaskImageFilter.h.
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ImageDimension constants
Definition at line 79 of file itkLabelMapMaskImageFilter.h.
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Definition at line 183 of file itkLabelMapMaskImageFilter.h.
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Definition at line 185 of file itkLabelMapMaskImageFilter.h.
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Definition at line 186 of file itkLabelMapMaskImageFilter.h.
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Definition at line 188 of file itkLabelMapMaskImageFilter.h.
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Definition at line 182 of file itkLabelMapMaskImageFilter.h.
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Definition at line 184 of file itkLabelMapMaskImageFilter.h.
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Definition at line 80 of file itkLabelMapMaskImageFilter.h.