ITK  5.0.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Static Public Attributes | Protected Member Functions | Private Types | Private Member Functions | Private Attributes | List of all members
itk::LesionSegmentationMethod< NDimension > Class Template Reference

#include <itkLesionSegmentationMethod.h>

+ Inheritance diagram for itk::LesionSegmentationMethod< NDimension >:
+ Collaboration diagram for itk::LesionSegmentationMethod< NDimension >:

Detailed Description

template<unsigned int NDimension>
class itk::LesionSegmentationMethod< NDimension >

Class for coordinating components of a segmentation framework.

This class was designed to facilitate the segmentation of lung lesions, but yet to be useful for other segmentation tasks.

SpatialObjects are used as inputs and outputs of this class.

Definition at line 43 of file itkLesionSegmentationMethod.h.

Public Types

using ConstPointer = SmartPointer< const Self >
 
using FeatureGeneratorType = FeatureGenerator< Dimension >
 
using Pointer = SmartPointer< Self >
 
using SegmentationModulePointer = typename SegmentationModuleType::Pointer
 
using SegmentationModuleType = SegmentationModule< Dimension >
 
using Self = LesionSegmentationMethod
 
using SpatialObjectConstPointer = typename SpatialObjectType::ConstPointer
 
using SpatialObjectPointer = typename SpatialObjectType::Pointer
 
using SpatialObjectType = SpatialObject< NDimension >
 
using Superclass = ProcessObject
 
- Public Types inherited from itk::ProcessObject
using ConstPointer = SmartPointer< const Self >
 
using DataObjectIdentifierType = DataObject::DataObjectIdentifierType
 
using DataObjectPointer = DataObject::Pointer
 
using DataObjectPointerArray = std::vector< DataObjectPointer >
 
using DataObjectPointerArraySizeType = DataObjectPointerArray::size_type
 
using MultiThreaderType = MultiThreaderBase
 
using NameArray = std::vector< DataObjectIdentifierType >
 
using Pointer = SmartPointer< Self >
 
using Self = ProcessObject
 
using Superclass = Object
 
- Public Types inherited from itk::Object
using ConstPointer = SmartPointer< const Self >
 
using Pointer = SmartPointer< Self >
 
using Self = Object
 
using Superclass = LightObject
 
- Public Types inherited from itk::LightObject
using ConstPointer = SmartPointer< const Self >
 
using Pointer = SmartPointer< Self >
 
using Self = LightObject
 

Public Member Functions

void AddFeatureGenerator (FeatureGeneratorType *generator)
 
virtual ::itk::LightObject::Pointer CreateAnother () const
 
virtual const char * GetNameOfClass () const
 
virtual void SetSegmentationModule (SegmentationModuleType *_arg)
 
virtual void SetRegionOfInterest (SpatialObjectType *_arg)
 
virtual const SpatialObjectTypeGetRegionOfInterest () const
 
virtual void SetInitialSegmentation (const SpatialObjectType *_arg)
 
virtual const SpatialObjectTypeGetInitialSegmentation () const
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual void EnlargeOutputRequestedRegion (DataObject *)
 
virtual const bool & GetAbortGenerateData () const
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
NameArray GetInputNames () const
 
DataObjectPointerArray GetInputs ()
 
MultiThreaderTypeGetMultiThreader () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual
DataObjectPointerArraySizeType 
GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
DataObjectPointerArray GetOutputs ()
 
virtual const float & GetProgress () const
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
virtual DataObjectPointer MakeOutput (DataObjectPointerArraySizeType idx)
 
virtual DataObjectPointer MakeOutput (const DataObjectIdentifierType &)
 
virtual void PrepareOutputs ()
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
virtual void SetAbortGenerateData (bool _arg)
 
void SetMultiThreader (MultiThreaderType *threader)
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float progress)
 
virtual void SetReleaseDataFlag (bool flag)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag () const
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void ReleaseDataBeforeUpdateFlagOff ()
 
virtual void SetNumberOfWorkUnits (ThreadIdType _arg)
 
virtual const ThreadIdTypeGetNumberOfWorkUnits () const
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
CommandGetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionaryGetMetaDataDictionary ()
 
const MetaDataDictionaryGetMetaDataDictionary () const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStampGetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
void Register () const override
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetReferenceCount (int) override
 
void UnRegister () const noexceptoverride
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
void SetMetaDataDictionary (MetaDataDictionary &&rrhs)
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 

Static Public Attributes

static constexpr unsigned int Dimension = NDimension
 

Protected Member Functions

void GenerateData () override
 
 LesionSegmentationMethod ()
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
 ~LesionSegmentationMethod () override
 
- Protected Member Functions inherited from itk::ProcessObject
virtual void AddInput (DataObject *input)
 
void AddOptionalInputName (const DataObjectIdentifierType &)
 
void AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
virtual void AddOutput (DataObject *output)
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void GenerateInputRequestedRegion ()
 
virtual void GenerateOutputInformation ()
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
DataObjectGetInput (const DataObjectIdentifierType &key)
 
const DataObjectGetInput (const DataObjectIdentifierType &key) const
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredInputs () const
 
virtual const
DataObjectPointerArraySizeType
GetNumberOfRequiredOutputs () const
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
virtual void PopBackInput ()
 
virtual void PopFrontInput ()
 
 ProcessObject ()
 
virtual void PropagateResetPipeline ()
 
virtual void PushBackInput (const DataObject *input)
 
virtual void PushFrontInput (const DataObject *input)
 
virtual void ReleaseInputs ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType num, DataObject *input)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType num, DataObject *output)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual void SetOutput (const DataObjectIdentifierType &key, DataObject *output)
 
virtual void SetPrimaryInput (DataObject *input)
 
virtual void SetPrimaryOutput (DataObject *output)
 
void SetRequiredInputNames (const NameArray &)
 
virtual void VerifyInputInformation () ITKv5_CONST
 
virtual void VerifyPreconditions () ITKv5_CONST
 
 ~ProcessObject () override
 
DataObjectGetInput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetInput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryInput ()
 
const DataObjectGetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName () const
 
DataObjectGetOutput (const DataObjectIdentifierType &key)
 
const DataObjectGetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName () const
 
DataObjectGetOutput (DataObjectPointerArraySizeType idx)
 
const DataObjectGetOutput (DataObjectPointerArraySizeType idx) const
 
DataObjectGetPrimaryOutput ()
 
const DataObjectGetPrimaryOutput () const
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
 ~Object () override
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Private Types

using FeatureGeneratorArrayType = std::vector< FeatureGeneratorPointer >
 
using FeatureGeneratorConstIterator = typename FeatureGeneratorArrayType::const_iterator
 
using FeatureGeneratorIterator = typename FeatureGeneratorArrayType::iterator
 
using FeatureGeneratorPointer = typename FeatureGeneratorType::Pointer
 

Private Member Functions

void ConnectFeaturesToSegmentationModule ()
 
void ExecuteSegmentationModule ()
 
void UpdateAllFeatureGenerators ()
 
void VerifyNumberOfAvailableFeaturesMatchedExpectations () const
 

Private Attributes

FeatureGeneratorArrayType m_FeatureGenerators
 
SpatialObjectConstPointer m_InitialSegmentation
 
ProgressAccumulator::Pointer m_ProgressAccumulator
 
SpatialObjectConstPointer m_RegionOfInterest
 
SegmentationModulePointer m_SegmentationModule
 

Additional Inherited Members

- Protected Attributes inherited from itk::ProcessObject
TimeStamp m_OutputInformationMTime
 
bool m_Updating
 
- Protected Attributes inherited from itk::LightObject
std::atomic< int > m_ReferenceCount
 

Member Typedef Documentation

template<unsigned int NDimension>
using itk::LesionSegmentationMethod< NDimension >::ConstPointer = SmartPointer<const Self>

Definition at line 52 of file itkLesionSegmentationMethod.h.

template<unsigned int NDimension>
using itk::LesionSegmentationMethod< NDimension >::FeatureGeneratorArrayType = std::vector< FeatureGeneratorPointer >
private

Definition at line 118 of file itkLesionSegmentationMethod.h.

template<unsigned int NDimension>
using itk::LesionSegmentationMethod< NDimension >::FeatureGeneratorConstIterator = typename FeatureGeneratorArrayType::const_iterator
private

Definition at line 120 of file itkLesionSegmentationMethod.h.

template<unsigned int NDimension>
using itk::LesionSegmentationMethod< NDimension >::FeatureGeneratorIterator = typename FeatureGeneratorArrayType::iterator
private

Definition at line 119 of file itkLesionSegmentationMethod.h.

template<unsigned int NDimension>
using itk::LesionSegmentationMethod< NDimension >::FeatureGeneratorPointer = typename FeatureGeneratorType::Pointer
private

Definition at line 117 of file itkLesionSegmentationMethod.h.

template<unsigned int NDimension>
using itk::LesionSegmentationMethod< NDimension >::FeatureGeneratorType = FeatureGenerator< Dimension >

Type of the class that will generate input features in the form of spatial objects.

Definition at line 83 of file itkLesionSegmentationMethod.h.

template<unsigned int NDimension>
using itk::LesionSegmentationMethod< NDimension >::Pointer = SmartPointer<Self>

Definition at line 51 of file itkLesionSegmentationMethod.h.

template<unsigned int NDimension>
using itk::LesionSegmentationMethod< NDimension >::SegmentationModulePointer = typename SegmentationModuleType::Pointer

Definition at line 94 of file itkLesionSegmentationMethod.h.

template<unsigned int NDimension>
using itk::LesionSegmentationMethod< NDimension >::SegmentationModuleType = SegmentationModule< Dimension >

Type of the segmentation module that encapsulate the actual segmentation algorithm.

Definition at line 93 of file itkLesionSegmentationMethod.h.

template<unsigned int NDimension>
using itk::LesionSegmentationMethod< NDimension >::Self = LesionSegmentationMethod

Standard class type alias.

Definition at line 49 of file itkLesionSegmentationMethod.h.

template<unsigned int NDimension>
using itk::LesionSegmentationMethod< NDimension >::SpatialObjectConstPointer = typename SpatialObjectType::ConstPointer

Definition at line 67 of file itkLesionSegmentationMethod.h.

template<unsigned int NDimension>
using itk::LesionSegmentationMethod< NDimension >::SpatialObjectPointer = typename SpatialObjectType::Pointer

Definition at line 66 of file itkLesionSegmentationMethod.h.

template<unsigned int NDimension>
using itk::LesionSegmentationMethod< NDimension >::SpatialObjectType = SpatialObject< NDimension >

Type of spatialObject that will be passed as input and output of this segmentation method.

Definition at line 65 of file itkLesionSegmentationMethod.h.

template<unsigned int NDimension>
using itk::LesionSegmentationMethod< NDimension >::Superclass = ProcessObject

Definition at line 50 of file itkLesionSegmentationMethod.h.

Constructor & Destructor Documentation

template<unsigned int NDimension>
itk::LesionSegmentationMethod< NDimension >::LesionSegmentationMethod ( )
protected
template<unsigned int NDimension>
itk::LesionSegmentationMethod< NDimension >::~LesionSegmentationMethod ( )
overrideprotected

Member Function Documentation

template<unsigned int NDimension>
void itk::LesionSegmentationMethod< NDimension >::AddFeatureGenerator ( FeatureGeneratorType generator)

Method for adding a feature generator that will compute the Nth feature to be passed to the segmentation module.

template<unsigned int NDimension>
void itk::LesionSegmentationMethod< NDimension >::ConnectFeaturesToSegmentationModule ( )
private

Connect the outputs of feature generators as input to the segmentation module

template<unsigned int NDimension>
virtual::itk::LightObject::Pointer itk::LesionSegmentationMethod< NDimension >::CreateAnother ( ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<unsigned int NDimension>
void itk::LesionSegmentationMethod< NDimension >::ExecuteSegmentationModule ( )
private
template<unsigned int NDimension>
void itk::LesionSegmentationMethod< NDimension >::GenerateData ( )
overrideprotectedvirtual

Method invoked by the pipeline in order to trigger the computation of the segmentation.

Reimplemented from itk::ProcessObject.

template<unsigned int NDimension>
virtual const SpatialObjectType* itk::LesionSegmentationMethod< NDimension >::GetInitialSegmentation ( ) const
virtual

SpatialObject that defines the initial segmentation. This will be used to initialize the segmentation process driven by the LesionSegmentationMethod.

template<unsigned int NDimension>
virtual const char* itk::LesionSegmentationMethod< NDimension >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::ProcessObject.

template<unsigned int NDimension>
virtual const SpatialObjectType* itk::LesionSegmentationMethod< NDimension >::GetRegionOfInterest ( ) const
virtual

SpatialObject that defines the Region of Interest in the input data

template<unsigned int NDimension>
static Pointer itk::LesionSegmentationMethod< NDimension >::New ( )
static

Method for creation through the object factory.

template<unsigned int NDimension>
void itk::LesionSegmentationMethod< NDimension >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::ProcessObject.

template<unsigned int NDimension>
virtual void itk::LesionSegmentationMethod< NDimension >::SetInitialSegmentation ( const SpatialObjectType _arg)
virtual

SpatialObject that defines the initial segmentation. This will be used to initialize the segmentation process driven by the LesionSegmentationMethod.

template<unsigned int NDimension>
virtual void itk::LesionSegmentationMethod< NDimension >::SetRegionOfInterest ( SpatialObjectType _arg)
virtual

SpatialObject that defines the Region of Interest in the input data

template<unsigned int NDimension>
virtual void itk::LesionSegmentationMethod< NDimension >::SetSegmentationModule ( SegmentationModuleType _arg)
virtual

Method for setting the class that encapsulates the actual segmentation algorithm.

template<unsigned int NDimension>
void itk::LesionSegmentationMethod< NDimension >::UpdateAllFeatureGenerators ( )
private

This method calls the Update() method of each one of the feature generators

template<unsigned int NDimension>
void itk::LesionSegmentationMethod< NDimension >::VerifyNumberOfAvailableFeaturesMatchedExpectations ( ) const
private

This method compares the number of available features against the number of expected features, and it will throw an exception if they do not match.

Member Data Documentation

template<unsigned int NDimension>
constexpr unsigned int itk::LesionSegmentationMethod< NDimension >::Dimension = NDimension
static

Dimension of the space

Definition at line 61 of file itkLesionSegmentationMethod.h.

template<unsigned int NDimension>
FeatureGeneratorArrayType itk::LesionSegmentationMethod< NDimension >::m_FeatureGenerators
private

Definition at line 122 of file itkLesionSegmentationMethod.h.

template<unsigned int NDimension>
SpatialObjectConstPointer itk::LesionSegmentationMethod< NDimension >::m_InitialSegmentation
private

Definition at line 115 of file itkLesionSegmentationMethod.h.

template<unsigned int NDimension>
ProgressAccumulator::Pointer itk::LesionSegmentationMethod< NDimension >::m_ProgressAccumulator
private

Definition at line 126 of file itkLesionSegmentationMethod.h.

template<unsigned int NDimension>
SpatialObjectConstPointer itk::LesionSegmentationMethod< NDimension >::m_RegionOfInterest
private

Definition at line 114 of file itkLesionSegmentationMethod.h.

template<unsigned int NDimension>
SegmentationModulePointer itk::LesionSegmentationMethod< NDimension >::m_SegmentationModule
private

Definition at line 124 of file itkLesionSegmentationMethod.h.


The documentation for this class was generated from the following file: