ITK  5.0.0
Insight Segmentation and Registration Toolkit
Public Types | Public Member Functions | Static Public Member Functions | Static Public Attributes | Protected Member Functions | Private Attributes | List of all members
itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType > Class Template Reference
Module ITKStatistics | Module PrincipalComponentsAnalysis

#include <itkVectorFieldPCA.h>

+ Inheritance diagram for itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >:
+ Collaboration diagram for itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >:

Detailed Description

template<typename TVectorFieldElementType, typename TPCType, typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
class itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >

Produce the principle components of a vector valued function.

This calculator produces a set of basis functions composed of the principal components of a set of vector valued functions.

Specify an itk::KernelFunction for Kernel PCA. The Kernel Function can take as input an optional point set.

This class is templated over the types of the vector valued functions, the output point types, and optionally the point set type.

Author
Michael Bowers, Laurent Younes

This code was contributed in the Insight Journal paper:

"Principal Components Analysis of Scalar, Vector, and Mesh Vertex Data" http://www.insight-journal.org/browse/publication/878

Definition at line 105 of file itkVectorFieldPCA.h.

Public Types

using BasisSetType = VectorContainer< unsigned int, MatrixType >
 
using BasisSetTypePointer = typename BasisSetType::Pointer
 
using ConstPointer = SmartPointer< const Self >
 
using InputPointSetConstPointer = typename InputPointSetType::ConstPointer
 
using InputPointSetPointer = typename InputPointSetType::Pointer
 
using InputPointSetType = TPointSetType
 
using InputPointType = typename InputPointSetType::PointType
 
using KernelFunctionPointer = typename KernelFunctionType::Pointer
 
using MatrixType = vnl_matrix< TPCType >
 
using Pointer = SmartPointer< Self >
 
using PointsContainer = typename InputPointSetType::PointsContainer
 
using PointsContainerIterator = typename PointsContainer::Iterator
 
using ResSetType = VectorContainer< unsigned int, VectorType >
 
using Self = VectorFieldPCA
 
using Superclass = Object
 
using VectorFieldSetType = VectorContainer< unsigned int, VectorFieldType >
 
using VectorFieldSetTypeConstPointer = typename VectorFieldSetType::ConstPointer
 
using VectorFieldSetTypePointer = typename VectorFieldSetType::Pointer
 
using VectorFieldType = vnl_matrix< TVectorFieldElementType >
 
using VectorType = vnl_vector< TPCType >
 
- Public Types inherited from itk::Object
using ConstPointer = SmartPointer< const Self >
 
using Pointer = SmartPointer< Self >
 
using Self = Object
 
using Superclass = LightObject
 
- Public Types inherited from itk::LightObject
using ConstPointer = SmartPointer< const Self >
 
using Pointer = SmartPointer< Self >
 
using Self = LightObject
 

Public Member Functions

void Compute (void)
 
virtual ::itk::LightObject::Pointer CreateAnother () const
 
virtual const char * GetNameOfClass () const
 
virtual void SetKernelFunction (KernelFunctionPointer _arg)
 
virtual void SetPointSet (InputPointSetPointer _arg)
 
virtual InputPointSetPointer GetPointSet ()
 
virtual void SetVectorFieldSet (VectorFieldSetTypePointer _arg)
 
virtual VectorFieldSetTypePointer GetVectorFieldSet ()
 
virtual void SetComponentCount (unsigned int _arg)
 
virtual unsigned int GetComponentCount ()
 
virtual const MatrixType & GetAveVectorField () const
 
virtual const VectorType & GetPCAEigenValues () const
 
virtual const BasisSetType * GetBasisVectors () const
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
Command * GetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionary & GetMetaDataDictionary ()
 
const MetaDataDictionary & GetMetaDataDictionary () const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStamp & GetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
void Register () const override
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetReferenceCount (int) override
 
void UnRegister () const noexceptoverride
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
void SetMetaDataDictionary (MetaDataDictionary &&rrhs)
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
 itkCloneMacro (Self)
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool flag)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 

Static Public Attributes

static constexpr unsigned int InputMeshDimension = TPointSetType::PointDimension
 

Protected Member Functions

void ComputeMomentumSCP ()
 
void KernelPCA ()
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
 VectorFieldPCA ()
 
 ~VectorFieldPCA () override
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &time)
 
 ~Object () override
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Private Attributes

MatrixType m_AveVectorField
 
BasisSetTypePointer m_BasisVectors
 
unsigned int m_ComponentCount
 
MatrixType m_K
 
KernelFunctionPointer m_KernelFunction
 
bool m_PCACalculated
 
VectorType m_PCAEigenValues
 
unsigned int m_PointDim
 
InputPointSetPointer m_PointSet
 
unsigned int m_SetSize
 
MatrixType m_V0
 
unsigned int m_VectorDimCount
 
VectorFieldSetTypePointer m_VectorFieldSet
 
unsigned int m_VertexCount
 

Additional Inherited Members

- Protected Attributes inherited from itk::LightObject
std::atomic< int > m_ReferenceCount
 

Member Typedef Documentation

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
using itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::BasisSetType = VectorContainer< unsigned int, MatrixType >

Definition at line 155 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
using itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::BasisSetTypePointer = typename BasisSetType::Pointer

Definition at line 158 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
using itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::ConstPointer = SmartPointer<const Self>

Definition at line 114 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
using itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::InputPointSetConstPointer = typename InputPointSetType::ConstPointer

Const Pointer type for the PointSet.

Definition at line 136 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
using itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::InputPointSetPointer = typename InputPointSetType::Pointer

Pointer types for the PointSet.

Definition at line 133 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
using itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::InputPointSetType = TPointSetType

Type definitions for the PointSet.

Definition at line 123 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
using itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::InputPointType = typename InputPointSetType::PointType

Definitions for points of the PointSet.

Definition at line 126 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
using itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::KernelFunctionPointer = typename KernelFunctionType::Pointer

Definition at line 159 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
using itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::MatrixType = vnl_matrix< TPCType >

types for the output.

Definition at line 152 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
using itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::Pointer = SmartPointer<Self>

Definition at line 113 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
using itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::PointsContainer = typename InputPointSetType::PointsContainer

Definitions for the PointsContainer.

Definition at line 129 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
using itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::PointsContainerIterator = typename PointsContainer::Iterator

Definition at line 130 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
using itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::ResSetType = VectorContainer< unsigned int, VectorType >

Definition at line 156 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
using itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::Self = VectorFieldPCA

Standard class type alias.

Definition at line 111 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
using itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::Superclass = Object

Definition at line 112 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
using itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::VectorFieldSetType = VectorContainer< unsigned int, VectorFieldType >

Definition at line 146 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
using itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::VectorFieldSetTypeConstPointer = typename VectorFieldSetType::ConstPointer

Definition at line 149 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
using itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::VectorFieldSetTypePointer = typename VectorFieldSetType::Pointer

Definition at line 148 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
using itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::VectorFieldType = vnl_matrix< TVectorFieldElementType >

type for the vector fields.

Definition at line 145 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
using itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::VectorType = vnl_vector< TPCType >

Definition at line 153 of file itkVectorFieldPCA.h.

Constructor & Destructor Documentation

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::VectorFieldPCA ( )
protected
template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::~VectorFieldPCA ( )
inlineoverrideprotected

Definition at line 204 of file itkVectorFieldPCA.h.

Member Function Documentation

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
void itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::Compute ( void  )

Compute the PCA decomposition of the input point set. If a Kernel and a Kernel Sigma are set , the calculator will perform Kernel PCA.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
void itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::ComputeMomentumSCP ( )
protected

Compute Momentum SCP.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
virtual::itk::LightObject::Pointer itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::CreateAnother ( ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
virtual const MatrixType& itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::GetAveVectorField ( ) const
virtual

Return the results.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
virtual const BasisSetType* itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::GetBasisVectors ( ) const
virtual

Return the results.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
virtual unsigned int itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::GetComponentCount ( )
virtual

Set and get the PCA count.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
virtual const char* itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::Object.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
virtual const VectorType& itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::GetPCAEigenValues ( ) const
virtual

Return the results.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
virtual InputPointSetPointer itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::GetPointSet ( )
virtual

Set and get the input point set.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
virtual VectorFieldSetTypePointer itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::GetVectorFieldSet ( )
virtual

Set and get the vector fields for the analysis.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
void itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::KernelPCA ( )
protected

Kernel PCA.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
static Pointer itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::New ( )
static

Method for creation through the object factory.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
void itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::PrintSelf ( std::ostream &  os,
Indent  indent 
) const
overrideprotectedvirtual

Methods invoked by Print() to print information about the object including superclasses. Typically not called by the user (use Print() instead) but used in the hierarchical print process to combine the output of several classes.

Reimplemented from itk::Object.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
virtual void itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::SetComponentCount ( unsigned int  _arg)
virtual

Set and get the PCA count.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
virtual void itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::SetKernelFunction ( KernelFunctionPointer  _arg)
virtual

Set pointer to the Kernel object.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
virtual void itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::SetPointSet ( InputPointSetPointer  _arg)
virtual

Set and get the input point set.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
virtual void itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::SetVectorFieldSet ( VectorFieldSetTypePointer  _arg)
virtual

Set and get the vector fields for the analysis.

Member Data Documentation

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
constexpr unsigned int itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::InputMeshDimension = TPointSetType::PointDimension
static

Input PointSet dimension.

Definition at line 142 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
MatrixType itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::m_AveVectorField
private

Definition at line 229 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
BasisSetTypePointer itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::m_BasisVectors
private

Definition at line 216 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
unsigned int itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::m_ComponentCount
private

Definition at line 222 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
MatrixType itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::m_K
private

Definition at line 230 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
KernelFunctionPointer itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::m_KernelFunction
private

Definition at line 219 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
bool itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::m_PCACalculated
private

Definition at line 232 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
VectorType itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::m_PCAEigenValues
private

Definition at line 214 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
unsigned int itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::m_PointDim
private

Definition at line 226 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
InputPointSetPointer itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::m_PointSet
private

Definition at line 218 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
unsigned int itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::m_SetSize
private

Definition at line 223 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
MatrixType itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::m_V0
private

Definition at line 228 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
unsigned int itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::m_VectorDimCount
private

Definition at line 224 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
VectorFieldSetTypePointer itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::m_VectorFieldSet
private

Definition at line 217 of file itkVectorFieldPCA.h.

template<typename TVectorFieldElementType , typename TPCType , typename TPointSetPixelType = float, typename TPointSetCoordRepType = float, typename KernelFunctionType = KernelFunctionBase<TPointSetCoordRepType>, class TPointSetType = PointSet<TPointSetPixelType, 3, DefaultStaticMeshTraits< TPointSetPixelType, 3, 3, TPointSetCoordRepType > >>
unsigned int itk::VectorFieldPCA< TVectorFieldElementType, TPCType, TPointSetPixelType, TPointSetCoordRepType, KernelFunctionType, TPointSetType >::m_VertexCount
private

Definition at line 225 of file itkVectorFieldPCA.h.

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