itkGiftiMeshIO.h

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/*=========================================================================
 *
 *  Copyright Insight Software Consortium
 *
 *  Licensed under the Apache License, Version 2.0 (the "License");
 *  you may not use this file except in compliance with the License.
 *  You may obtain a copy of the License at
 *
 *         http://www.apache.org/licenses/LICENSE-2.0.txt
 *
 *  Unless required by applicable law or agreed to in writing, software
 *  distributed under the License is distributed on an "AS IS" BASIS,
 *  WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
 *  See the License for the specific language governing permissions and
 *  limitations under the License.
 *
 *=========================================================================*/
#ifndef itkGiftiMeshIO_h
#define itkGiftiMeshIO_h
#include "ITKIOMeshGiftiExport.h"

#include <memory>
#include "itkMapContainer.h"
#include "itkMatrix.h"
#include "itkMeshIOBase.h"
#include "itkRGBAPixel.h"

#include <fstream>
#include <string>

namespace itk
{
class ITKIOMeshGifti_EXPORT GiftiMeshIO:public MeshIOBase
{
public:
  ITK_DISALLOW_COPY_AND_ASSIGN(GiftiMeshIO);

  using Self = GiftiMeshIO;
  using Superclass = MeshIOBase;
  using ConstPointer = SmartPointer< const Self >;
  using Pointer = SmartPointer< Self >;

  using SizeValueType = Superclass::SizeValueType;
  using DirectionType = Matrix< double, 4, 4 >;
  using RGBAPixelType = RGBAPixel<float>;
  using LabelColorContainer = MapContainer<int, RGBAPixelType>;
  using LabelNameContainer = MapContainer<int, std::string>;
  using LabelColorContainerPointer = LabelColorContainer::Pointer;
  using LabelNameContainerPointer = LabelNameContainer::Pointer;

  itkNewMacro(Self);

  itkTypeMacro(GiftiMeshIO, MeshIOBase);

  itkGetConstMacro(ReadPointData, bool);
  itkSetMacro(ReadPointData, bool);
  itkBooleanMacro(ReadPointData);

  void SetDirection(const DirectionType & direction);

  itkGetConstReferenceMacro(Direction, DirectionType);

  LabelColorContainerPointer GetLabelColorTable();
  LabelNameContainerPointer  GetLabelNameTable();
  void SetLabelColorTable(const LabelColorContainer * colorMap);
  void SetLabelNameTable(const LabelNameContainer * labelMap);

  /*-------- This part of the interfaces deals with reading data. ----- */

  bool CanReadFile(const char *FileNameToRead) override;

  void ReadMeshInformation() override;

  void ReadPoints(void *buffer) override;

  void ReadCells(void *buffer) override;

  void ReadPointData(void *buffer) override;

  void ReadCellData(void *buffer) override;

  /*-------- This part of the interfaces deals with writing data. ----- */

  bool CanWriteFile(const char *FileNameToWrite) override;

  void WriteMeshInformation() override;

  void WritePoints(void *buffer) override;

  void WriteCells(void *buffer) override;

  void WritePointData(void *buffer) override;

  void WriteCellData(void *buffer) override;

  void Write() override;

protected:
  GiftiMeshIO();
  ~GiftiMeshIO() override;

  void PrintSelf(std::ostream & os, Indent indent) const override;

  template< typename TInput, typename TOutput >
  void ConvertBuffer(TInput *input, TOutput *output, SizeValueType numberOfElements)
  {
    if ( input && output )
      {
      for ( SizeValueType ii = 0; ii < numberOfElements; ii++ )
        {
        output[ii] = static_cast< TOutput >( input[ii] );
        }
      }
  }

private:
  //This proxy class provides a gifti_image pointer interface to the internal implementation
  //of itk::GiftiImageIO, while hiding the gifticlib interface from the external ITK interface.
  class GiftiImageProxy;

  //Note that it is essential that m_GiftiImageHolder is defined before m_GiftiImage, to ensure that
  //m_GiftiImage can directly get a proxy from m_GiftiImageHolder during GiftiImageIO construction.
  const std::unique_ptr<GiftiImageProxy> m_GiftiImageHolder;

  GiftiImageProxy& m_GiftiImage;

  bool          m_ReadPointData;
  DirectionType m_Direction;
};
} // end namespace itk

#endif