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ITK
5.1.0
Insight Toolkit
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#include <itkLabelOverlapMeasuresImageFilter.h>
Classes | |
class | LabelSetMeasures |
Public Types | |
using | ConstPointer = SmartPointer< const Self > |
using | IndexType = typename TLabelImage::IndexType |
using | LabelImageConstPointer = typename TLabelImage::ConstPointer |
using | LabelImagePointer = typename TLabelImage::Pointer |
using | LabelImageType = TLabelImage |
using | LabelType = typename TLabelImage::PixelType |
using | MapConstIterator = typename MapType::const_iterator |
using | MapIterator = typename MapType::iterator |
using | MapType = std::unordered_map< LabelType, LabelSetMeasures > |
using | Pointer = SmartPointer< Self > |
using | RealType = typename NumericTraits< LabelType >::RealType |
using | RegionType = typename TLabelImage::RegionType |
using | Self = LabelOverlapMeasuresImageFilter |
using | SizeType = typename TLabelImage::SizeType |
using | Superclass = ImageToImageFilter< TLabelImage, TLabelImage > |
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using | ConstPointer = SmartPointer< const Self > |
using | InputImageConstPointer = typename InputImageType::ConstPointer |
using | InputImagePixelType = typename InputImageType::PixelType |
using | InputImagePointer = typename InputImageType::Pointer |
using | InputImageRegionType = typename InputImageType::RegionType |
using | InputImageType = TLabelImage |
using | OutputImagePixelType = typename Superclass::OutputImagePixelType |
using | OutputImageRegionType = typename Superclass::OutputImageRegionType |
using | Pointer = SmartPointer< Self > |
using | Self = ImageToImageFilter |
using | Superclass = ImageSource< TLabelImage > |
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using | ConstPointer = SmartPointer< const Self > |
using | DataObjectIdentifierType = Superclass::DataObjectIdentifierType |
using | DataObjectPointer = DataObject::Pointer |
using | DataObjectPointerArraySizeType = Superclass::DataObjectPointerArraySizeType |
using | OutputImagePixelType = typename OutputImageType::PixelType |
using | OutputImagePointer = typename OutputImageType::Pointer |
using | OutputImageRegionType = typename OutputImageType::RegionType |
using | OutputImageType = TLabelImage |
using | Pointer = SmartPointer< Self > |
using | Self = ImageSource |
using | Superclass = ProcessObject |
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using | ConstPointer = SmartPointer< const Self > |
using | DataObjectIdentifierType = DataObject::DataObjectIdentifierType |
using | DataObjectPointer = DataObject::Pointer |
using | DataObjectPointerArray = std::vector< DataObjectPointer > |
using | DataObjectPointerArraySizeType = DataObjectPointerArray::size_type |
using | MultiThreaderType = MultiThreaderBase |
using | NameArray = std::vector< DataObjectIdentifierType > |
using | Pointer = SmartPointer< Self > |
using | Self = ProcessObject |
using | Superclass = Object |
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using | ConstPointer = SmartPointer< const Self > |
using | Pointer = SmartPointer< Self > |
using | Self = Object |
using | Superclass = LightObject |
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using | ConstPointer = SmartPointer< const Self > |
using | Pointer = SmartPointer< Self > |
using | Self = LightObject |
Static Public Member Functions | |
static Pointer | New () |
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static void | SetGlobalDefaultDirectionTolerance (double) |
static double | GetGlobalDefaultDirectionTolerance () |
static void | SetGlobalDefaultCoordinateTolerance (double) |
static double | GetGlobalDefaultCoordinateTolerance () |
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static bool | GetGlobalWarningDisplay () |
static void | GlobalWarningDisplayOff () |
static void | GlobalWarningDisplayOn () |
static Pointer | New () |
static void | SetGlobalWarningDisplay (bool flag) |
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static void | BreakOnError () |
static Pointer | New () |
Computes overlap measures between the set same set of labels of pixels of two images. Background is assumed to be 0.
This code was contributed in the Insight Journal paper: "Introducing Dice, Jaccard, and Other Label Overlap Measures To ITK" by Nicholas J. Tustison, James C. Gee https://hdl.handle.net/10380/3141 http://www.insight-journal.org/browse/publication/707
Definition at line 46 of file itkLabelOverlapMeasuresImageFilter.h.
using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::ConstPointer = SmartPointer<const Self> |
Definition at line 55 of file itkLabelOverlapMeasuresImageFilter.h.
using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::IndexType = typename TLabelImage::IndexType |
Definition at line 70 of file itkLabelOverlapMeasuresImageFilter.h.
using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelImageConstPointer = typename TLabelImage::ConstPointer |
Definition at line 66 of file itkLabelOverlapMeasuresImageFilter.h.
using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelImagePointer = typename TLabelImage::Pointer |
Definition at line 65 of file itkLabelOverlapMeasuresImageFilter.h.
using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelImageType = TLabelImage |
Image related type alias.
Definition at line 64 of file itkLabelOverlapMeasuresImageFilter.h.
using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::LabelType = typename TLabelImage::PixelType |
Definition at line 72 of file itkLabelOverlapMeasuresImageFilter.h.
using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::MapConstIterator = typename MapType::const_iterator |
Definition at line 122 of file itkLabelOverlapMeasuresImageFilter.h.
using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::MapIterator = typename MapType::iterator |
Definition at line 121 of file itkLabelOverlapMeasuresImageFilter.h.
using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::MapType = std::unordered_map<LabelType, LabelSetMeasures> |
Type of the map used to store data per label
Definition at line 120 of file itkLabelOverlapMeasuresImageFilter.h.
using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::Pointer = SmartPointer<Self> |
Definition at line 54 of file itkLabelOverlapMeasuresImageFilter.h.
using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::RealType = typename NumericTraits<LabelType>::RealType |
Type to use for computations.
Definition at line 75 of file itkLabelOverlapMeasuresImageFilter.h.
using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::RegionType = typename TLabelImage::RegionType |
Definition at line 68 of file itkLabelOverlapMeasuresImageFilter.h.
using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::Self = LabelOverlapMeasuresImageFilter |
Standard Self type alias
Definition at line 52 of file itkLabelOverlapMeasuresImageFilter.h.
using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::SizeType = typename TLabelImage::SizeType |
Definition at line 69 of file itkLabelOverlapMeasuresImageFilter.h.
using itk::LabelOverlapMeasuresImageFilter< TLabelImage >::Superclass = ImageToImageFilter<TLabelImage, TLabelImage> |
Definition at line 53 of file itkLabelOverlapMeasuresImageFilter.h.
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protected |
Get the union overlap (Jaccard coefficient) over all labels.
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overrideprotecteddefault |
Get the union overlap (Jaccard coefficient) over all labels.
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overrideprotectedvirtual |
Get the union overlap (Jaccard coefficient) over all labels.
Reimplemented from itk::ImageSource< TLabelImage >.
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overrideprotectedvirtual |
Pass the input through unmodified. Do this by setting the output to the source this by setting the output to the source image in the AllocateOutputs() method.
Reimplemented from itk::ImageSource< TLabelImage >.
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overrideprotectedvirtual |
Get the union overlap (Jaccard coefficient) over all labels.
Reimplemented from itk::ImageSource< TLabelImage >.
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virtual |
Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.
Reimplemented from itk::Object.
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inlineoverrideprotected |
Get the union overlap (Jaccard coefficient) over all labels.
Definition at line 265 of file itkLabelOverlapMeasuresImageFilter.h.
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overrideprotectedvirtual |
Get the union overlap (Jaccard coefficient) over all labels.
Reimplemented from itk::ProcessObject.
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inline |
Get the union overlap (Jaccard coefficient) over all labels.
Definition at line 195 of file itkLabelOverlapMeasuresImageFilter.h.
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inline |
Get the union overlap (Jaccard coefficient) over all labels.
Definition at line 205 of file itkLabelOverlapMeasuresImageFilter.h.
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalseNegativeError | ( | ) | const |
Get the false negative error over all labels.
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalseNegativeError | ( | LabelType | ) | const |
Get the false negative error for the specified individual label.
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalsePositiveError | ( | ) | const |
Get the false positive error over all labels.
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetFalsePositiveError | ( | LabelType | ) | const |
Get the false positive error for the specified individual label.
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inline |
Get the union overlap (Jaccard coefficient) over all labels.
Definition at line 175 of file itkLabelOverlapMeasuresImageFilter.h.
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inline |
Get the union overlap (Jaccard coefficient) over all labels.
Definition at line 185 of file itkLabelOverlapMeasuresImageFilter.h.
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inline |
Get the label set measures.
Definition at line 157 of file itkLabelOverlapMeasuresImageFilter.h.
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetMeanOverlap | ( | ) | const |
Get the mean overlap (Dice coefficient) over all labels.
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetMeanOverlap | ( | LabelType | ) | const |
Get the mean overlap (Dice coefficient) for the specified individual label.
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virtual |
Runtime information support.
Reimplemented from itk::ImageToImageFilter< TLabelImage, TLabelImage >.
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inline |
Get the source image.
Definition at line 143 of file itkLabelOverlapMeasuresImageFilter.h.
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inline |
Get the target image.
Definition at line 150 of file itkLabelOverlapMeasuresImageFilter.h.
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetTargetOverlap | ( | LabelType | ) | const |
Get the target overlap for the specified individual label.
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetTotalOverlap | ( | ) | const |
Get the total overlap over all labels.
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetUnionOverlap | ( | ) | const |
Get the union overlap (Jaccard coefficient) over all labels.
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetUnionOverlap | ( | LabelType | ) | const |
Get the union overlap (Jaccard coefficient) for the specified individual label.
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetVolumeSimilarity | ( | ) | const |
Get the volume similarity over all labels.
RealType itk::LabelOverlapMeasuresImageFilter< TLabelImage >::GetVolumeSimilarity | ( | LabelType | ) | const |
Get the volume similarity for the specified individual label.
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static |
Method for creation through the object factory.
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overrideprotectedvirtual |
Get the union overlap (Jaccard coefficient) over all labels.
Reimplemented from itk::ProcessObject.
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inline |
Set the source image.
Definition at line 129 of file itkLabelOverlapMeasuresImageFilter.h.
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inline |
Set the target image.
Definition at line 136 of file itkLabelOverlapMeasuresImageFilter.h.
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overrideprotected |
Multi-thread version GenerateData.
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staticconstexpr |
Image related type alias.
Definition at line 125 of file itkLabelOverlapMeasuresImageFilter.h.
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private |
Get the union overlap (Jaccard coefficient) over all labels.
Definition at line 276 of file itkLabelOverlapMeasuresImageFilter.h.
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private |
Get the union overlap (Jaccard coefficient) over all labels.
Definition at line 275 of file itkLabelOverlapMeasuresImageFilter.h.