#include <itkCompareHistogramImageToImageMetric.h>

Inheritance diagram for itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >:

Collaboration diagram for itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >:

Public Types
using	ConstPointer = SmartPointer< const Self >

using	DerivativeType = typename Superclass::DerivativeType

using	FixedImageConstPointer = typename Superclass::FixedImageConstPointer

using	FixedImageRegionType = typename Superclass::FixedImageRegionType

using	FixedImageType = typename Superclass::FixedImageType

using	GradientPixelType = typename Superclass::GradientPixelType

using	HistogramAbsoluteFrequencyType = typename HistogramType::AbsoluteFrequencyType

using	HistogramFrequencyType = HistogramAbsoluteFrequencyType

using	HistogramIteratorType = typename HistogramType::Iterator

using	HistogramMeasurementVectorType = typename HistogramType::MeasurementVectorType

using	HistogramPointerType = typename HistogramType::Pointer

using	HistogramSizeType = typename Superclass::HistogramSizeType

using	HistogramType = typename Superclass::HistogramType

using	InterpolatorPointer = typename Superclass::InterpolatorPointer

using	InterpolatorType = typename Superclass::InterpolatorType

using	MeasureType = typename Superclass::MeasureType

using	MovingImageConstPointer = typename Superclass::MovingImageConstPointer

using	MovingImageType = typename Superclass::MovingImageType

using	Pointer = SmartPointer< Self >

using	RealType = typename Superclass::RealType

using	Self = CompareHistogramImageToImageMetric

using	Superclass = HistogramImageToImageMetric< TFixedImage, TMovingImage >

using	TransformConstPointer = typename TransformType::ConstPointer

using	TransformJacobianType = typename Superclass::TransformJacobianType

using	TransformParametersType = typename Superclass::TransformParametersType

using	TransformPointer = typename Superclass::TransformPointer

using	TransformType = typename Superclass::TransformType

Public Types inherited from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >
using	ConstPointer = SmartPointer< const Self >

using	DerivativeType = typename Superclass::DerivativeType

using	FixedImageConstPointerType = typename Superclass::FixedImageConstPointer

using	FixedImagePixelType = typename Superclass::FixedImageType::PixelType

using	FixedImageType = typename Superclass::FixedImageType

using	GradientPixelType = typename Superclass::GradientPixelType

using	HistogramPointer = typename HistogramType::Pointer

using	HistogramSizeType = typename HistogramType::SizeType

using	HistogramType = Statistics::Histogram< double >

using	InputPointType = typename Superclass::InputPointType

using	MeasurementVectorType = typename HistogramType::MeasurementVectorType

using	MeasureType = typename Superclass::MeasureType

using	MovingImageConstPointerType = typename Superclass::MovingImageConstPointer

using	MovingImagePixelType = typename Superclass::MovingImageType::PixelType

using	MovingImageType = typename Superclass::MovingImageType

using	OutputPointType = typename Superclass::OutputPointType

using	Pointer = SmartPointer< Self >

using	RealType = typename Superclass::RealType

using	Self = HistogramImageToImageMetric

using	Superclass = ImageToImageMetric< TFixedImage, TMovingImage >

using	TransformJacobianType = typename Superclass::TransformJacobianType

using	TransformParametersType = typename Superclass::TransformParametersType

using	TransformPointer = typename Superclass::TransformPointer

using	TransformType = typename Superclass::TransformType

using	ScalesType = Array< double >

Public Types inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
using	ConstPointer = SmartPointer< const Self >

using	CoordinateRepresentationType = typename Superclass::ParametersValueType

using	DerivativeType = typename Superclass::DerivativeType

using	FixedImageConstPointer = typename FixedImageType::ConstPointer

using	FixedImageIndexContainer = std::vector< FixedImageIndexType >

using	FixedImageIndexType = typename FixedImageType::IndexType

using	FixedImageIndexValueType = typename FixedImageIndexType::IndexValueType

using	FixedImageMaskConstPointer = typename FixedImageMaskType::ConstPointer

using	FixedImageMaskPointer = typename FixedImageMaskType::Pointer

using	FixedImageMaskType = SpatialObject< Self::FixedImageDimension >

using	FixedImagePixelType = typename TFixedImage::PixelType

using	FixedImagePointType = typename TransformType::InputPointType

using	FixedImageRegionType = typename FixedImageType::RegionType

using	FixedImageType = TFixedImage

using	GradientImageFilterPointer = typename GradientImageFilterType::Pointer

using	GradientImageFilterType = GradientRecursiveGaussianImageFilter< MovingImageType, GradientImageType >

using	GradientImagePointer = SmartPointer< GradientImageType >

using	GradientImageType = Image< GradientPixelType, Self::MovingImageDimension >

using	GradientPixelType = CovariantVector< RealType, Self::MovingImageDimension >

using	InputPointType = typename TransformType::InputPointType

using	InterpolatorPointer = typename InterpolatorType::Pointer

using	InterpolatorType = InterpolateImageFunction< MovingImageType, CoordinateRepresentationType >

using	MeasureType = typename Superclass::MeasureType

using	MovingImageConstPointer = typename MovingImageType::ConstPointer

using	MovingImageIndexType = typename MovingImageType::IndexType

using	MovingImageMaskConstPointer = typename MovingImageMaskType::ConstPointer

using	MovingImageMaskPointer = typename MovingImageMaskType::Pointer

using	MovingImageMaskType = SpatialObject< Self::MovingImageDimension >

using	MovingImagePixelType = typename TMovingImage::PixelType

using	MovingImagePointType = typename TransformType::OutputPointType

using	MovingImageType = TMovingImage

using	OutputPointType = typename TransformType::OutputPointType

using	ParametersType = typename Superclass::ParametersType

using	Pointer = SmartPointer< Self >

using	RealType = typename NumericTraits< MovingImagePixelType >::RealType

using	Self = ImageToImageMetric

using	Superclass = SingleValuedCostFunction

using	TransformJacobianType = typename TransformType::JacobianType

using	TransformParametersType = typename TransformType::ParametersType

using	TransformPointer = typename TransformType::Pointer

using	TransformType = Transform< CoordinateRepresentationType, Self::MovingImageDimension, Self::FixedImageDimension >

using	MultiThreaderType = MultiThreaderBase

Public Types inherited from itk::SingleValuedCostFunction
using	ConstPointer = SmartPointer< const Self >

using	DerivativeType = Array< ParametersValueType >

using	MeasureType = double

using	ParametersType = Superclass::ParametersType

using	ParametersValueType = Superclass::ParametersValueType

using	Pointer = SmartPointer< Self >

using	Self = SingleValuedCostFunction

using	Superclass = CostFunction

Public Types inherited from itk::CostFunctionTemplate< TInternalComputationValueType >
using	ConstPointer = SmartPointer< const Self >

using	ParametersType = OptimizerParameters< TInternalComputationValueType >

using	ParametersValueType = TInternalComputationValueType

using	Pointer = SmartPointer< Self >

using	Self = CostFunctionTemplate

using	Superclass = Object

Public Types inherited from itk::Object
using	ConstPointer = SmartPointer< const Self >

using	Pointer = SmartPointer< Self >

using	Self = Object

using	Superclass = LightObject

Public Types inherited from itk::LightObject
using	ConstPointer = SmartPointer< const Self >

using	Pointer = SmartPointer< Self >

using	Self = LightObject

Public Member Functions
virtual const char *	GetNameOfClass () const

Public Member Functions inherited from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >
virtual const HistogramSizeType &	GetHistogramSize () const

void	Initialize () override

virtual void	SetHistogramSize (HistogramSizeType _arg)

void	SetTransform (TransformType *transform) override

virtual void	SetUpperBoundIncreaseFactor (double _arg)

virtual double	GetUpperBoundIncreaseFactor () const

virtual void	SetPaddingValue (FixedImagePixelType _arg)

virtual const FixedImagePixelType &	GetPaddingValue () const

virtual const HistogramPointer &	GetHistogram () const

virtual void	SetUsePaddingValue (bool _arg)

virtual bool	GetUsePaddingValue () const

virtual void	SetDerivativeStepLength (double _arg)

virtual double	GetDerivativeStepLength () const

virtual void	SetDerivativeStepLengthScales (ScalesType _arg)

virtual const ScalesType &	GetDerivativeStepLengthScales () const

MeasureType	GetValue (const TransformParametersType &parameters) const override

void	GetDerivative (const TransformParametersType &parameters, DerivativeType &derivative) const override

void	GetValueAndDerivative (const TransformParametersType &parameters, MeasureType &value, DerivativeType &derivative) const override

void	SetLowerBound (const MeasurementVectorType &bounds)

const MeasurementVectorType &	GetLowerBound () const

void	SetUpperBound (const MeasurementVectorType &bounds)

const MeasurementVectorType &	GetUpperBound () const

Public Member Functions inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
virtual void	SetFixedImage (const FixedImageType *_arg)

virtual const FixedImageType *	GetFixedImage () const

virtual void	SetMovingImage (const MovingImageType *_arg)

virtual const MovingImageType *	GetMovingImage () const

virtual void	SetTransform (TransformType *_arg)

virtual TransformType *	GetModifiableTransform ()

virtual const TransformType *	GetTransform () const

virtual void	SetInterpolator (InterpolatorType *_arg)

virtual InterpolatorType *	GetModifiableInterpolator ()

virtual const InterpolatorType *	GetInterpolator () const

SizeValueType	GetNumberOfMovingImageSamples ()

virtual const SizeValueType &	GetNumberOfPixelsCounted () const

virtual void	SetFixedImageRegion (const FixedImageRegionType reg)

virtual const FixedImageRegionType &	GetFixedImageRegion () const

virtual void	SetMovingImageMask (MovingImageMaskType *_arg)

virtual void	SetMovingImageMask (const MovingImageMaskType *_arg)

virtual const MovingImageMaskType *	GetMovingImageMask () const

virtual void	SetFixedImageMask (FixedImageMaskType *_arg)

virtual void	SetFixedImageMask (const FixedImageMaskType *_arg)

virtual const FixedImageMaskType *	GetFixedImageMask () const

void	SetFixedImageIndexes (const FixedImageIndexContainer &indexes)

void	SetUseFixedImageIndexes (bool useIndexes)

virtual const bool &	GetUseFixedImageIndexes () const

void	SetNumberOfWorkUnits (ThreadIdType numberOfThreads)

virtual const ThreadIdType &	GetNumberOfWorkUnits () const

virtual void	SetComputeGradient (bool _arg)

virtual const bool &	GetComputeGradient () const

virtual void	ComputeGradientOn ()

virtual void	ComputeGradientOff ()

virtual void	ComputeGradient ()

virtual GradientImageType *	GetModifiableGradientImage ()

virtual const GradientImageType *	GetGradientImage () const

void	SetTransformParameters (const ParametersType &parameters) const

unsigned int	GetNumberOfParameters () const override

virtual void	MultiThreadingInitialize ()

virtual void	SetNumberOfFixedImageSamples (SizeValueType numSamples)

virtual const SizeValueType &	GetNumberOfFixedImageSamples () const

void	SetNumberOfSpatialSamples (SizeValueType num)

SizeValueType	GetNumberOfSpatialSamples ()

void	SetFixedImageSamplesIntensityThreshold (const FixedImagePixelType &thresh)

virtual const FixedImagePixelType &	GetFixedImageSamplesIntensityThreshold () const

void	SetUseFixedImageSamplesIntensityThreshold (bool useThresh)

virtual const bool &	GetUseFixedImageSamplesIntensityThreshold () const

void	SetUseAllPixels (bool useAllPixels)

void	UseAllPixelsOn ()

void	UseAllPixelsOff ()

virtual const bool &	GetUseAllPixels () const

void	SetUseSequentialSampling (bool useSequential)

virtual const bool &	GetUseSequentialSampling () const

void	ReinitializeSeed ()

void	ReinitializeSeed (int seed)

virtual void	SetUseCachingOfBSplineWeights (bool _arg)

virtual const bool &	GetUseCachingOfBSplineWeights () const

virtual void	UseCachingOfBSplineWeightsOn ()

virtual void	UseCachingOfBSplineWeightsOff ()

virtual MultiThreaderType *	GetModifiableThreader ()

virtual const MultiThreaderType *	GetThreader () const

const TransformPointer *	GetThreaderTransform ()

Public Member Functions inherited from itk::SingleValuedCostFunction
virtual void	GetDerivative (const ParametersType &parameters, DerivativeType &derivative) const =0

virtual MeasureType	GetValue (const ParametersType &parameters) const =0

virtual void	GetValueAndDerivative (const ParametersType &parameters, MeasureType &value, DerivativeType &derivative) const

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)

unsigned long	AddObserver (const EventObject &event, Command *) const

unsigned long	AddObserver (const EventObject &event, std::function< void(const EventObject &)> function) const

LightObject::Pointer	CreateAnother () const override

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary ()

const MetaDataDictionary &	GetMetaDataDictionary () const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

void	Register () const override

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag)

void	SetDebug (bool debugFlag) const

void	SetReferenceCount (int) override

void	UnRegister () const noexcept override

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

void	SetMetaDataDictionary (MetaDataDictionary &&rrhs)

virtual void	SetObjectName (std::string _arg)

virtual const std::string &	GetObjectName () const

Public Member Functions inherited from itk::LightObject
Pointer	Clone () const

virtual void	Delete ()

virtual int	GetReferenceCount () const

void	Print (std::ostream &os, Indent indent=0) const

FixedImageConstPointer	m_TrainingFixedImage

MovingImageConstPointer	m_TrainingMovingImage

TransformPointer	m_TrainingTransform

InterpolatorPointer	m_TrainingInterpolator

FixedImageRegionType	m_TrainingFixedImageRegion

HistogramPointerType	m_TrainingHistogram

virtual void	SetTrainingHistogram (HistogramPointerType _arg)

virtual const HistogramPointerType &	GetTrainingHistogram () const

virtual void	SetTrainingFixedImage (const FixedImageType *_arg)

virtual void	SetTrainingMovingImage (const MovingImageType *_arg)

virtual const MovingImageType *	GetTrainingMovingImage () const

virtual void	SetTrainingTransform (TransformType *_arg)

virtual TransformType *	GetModifiableTrainingTransform ()

virtual const TransformType *	GetTrainingTransform () const

virtual void	SetTrainingInterpolator (InterpolatorType *_arg)

virtual InterpolatorType *	GetModifiableTrainingInterpolator ()

virtual const InterpolatorType *	GetTrainingInterpolator () const

virtual void	SetTrainingFixedImageRegion (FixedImageRegionType _arg)

virtual const FixedImageRegionType &	GetTrainingFixedImageRegion () const

unsigned int	GetNumberOfParameters () const override

void	Initialize () override

	CompareHistogramImageToImageMetric ()

	~CompareHistogramImageToImageMetric () override=default

void	PrintSelf (std::ostream &os, Indent indent) const override

void	FormTrainingHistogram ()

MeasureType	EvaluateMeasure (HistogramType &histogram) const override=0

Additional Inherited Members
Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool val)

Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Static Public Attributes inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
static constexpr unsigned int	FixedImageDimension = TFixedImage::ImageDimension

static constexpr unsigned int	MovingImageDimension = TMovingImage::ImageDimension

Protected Types inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
using	FixedImageSampleContainer = std::vector< FixedImageSamplePoint >

using	BSplineTransformType = BSplineBaseTransform< CoordinateRepresentationType, FixedImageType::ImageDimension, Self::DeformationSplineOrder >

using	BSplineTransformWeightsType = typename BSplineTransformType::WeightsType

using	WeightsValueType = typename BSplineTransformWeightsType::ValueType

using	BSplineTransformWeightsArrayType = Array2D< WeightsValueType >

using	BSplineTransformIndexArrayType = typename BSplineTransformType::ParameterIndexArrayType

using	IndexValueType = typename BSplineTransformIndexArrayType::ValueType

using	BSplineTransformIndicesArrayType = Array2D< IndexValueType >

using	MovingImagePointArrayType = std::vector< MovingImagePointType >

using	BooleanArrayType = std::vector< bool >

using	BSplineParametersOffsetType = FixedArray< SizeValueType, FixedImageType::ImageDimension >

using	BSplineInterpolatorType = BSplineInterpolateImageFunction< MovingImageType, CoordinateRepresentationType >

using	DerivativeFunctionType = CentralDifferenceImageFunction< MovingImageType, CoordinateRepresentationType >

using	ImageDerivativesType = CovariantVector< double, Self::MovingImageDimension >

Protected Member Functions inherited from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >
	HistogramImageToImageMetric ()

	~HistogramImageToImageMetric () override=default

void	ComputeHistogram (const TransformParametersType &parameters, HistogramType &histogram) const

void	ComputeHistogram (const TransformParametersType &parameters, unsigned int parameter, double step, HistogramType &histogram) const

void	CopyHistogram (HistogramType &target, HistogramType &source) const

virtual MeasureType	EvaluateMeasure (HistogramType &histogram) const =0

void	PrintSelf (std::ostream &os, Indent indent) const override

Protected Member Functions inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
	ImageToImageMetric ()

	~ImageToImageMetric () override

void	PrintSelf (std::ostream &os, Indent indent) const override

virtual void	SampleFixedImageRegion (FixedImageSampleContainer &samples) const

virtual void	SampleFixedImageIndexes (FixedImageSampleContainer &samples) const

virtual void	SampleFullFixedImageRegion (FixedImageSampleContainer &samples) const

virtual void	PreComputeTransformValues ()

virtual void	TransformPoint (unsigned int sampleNumber, MovingImagePointType &mappedPoint, bool &sampleOk, double &movingImageValue, ThreadIdType threadId) const

virtual void	TransformPointWithDerivatives (unsigned int sampleNumber, MovingImagePointType &mappedPoint, bool &sampleOk, double &movingImageValue, ImageDerivativesType &movingImageGradient, ThreadIdType threadId) const

virtual void	ComputeImageDerivatives (const MovingImagePointType &mappedPoint, ImageDerivativesType &gradient, ThreadIdType threadId) const

void	GetValueMultiThreadedInitiate () const

void	GetValueMultiThreadedPostProcessInitiate () const

virtual void	GetValueThread (ThreadIdType threadId) const

virtual void	GetValueThreadPreProcess (ThreadIdType, bool) const

virtual bool	GetValueThreadProcessSample (ThreadIdType, SizeValueType, const MovingImagePointType &, double) const

virtual void	GetValueThreadPostProcess (ThreadIdType, bool) const

void	GetValueAndDerivativeMultiThreadedInitiate () const

void	GetValueAndDerivativeMultiThreadedPostProcessInitiate () const

virtual void	GetValueAndDerivativeThread (ThreadIdType threadId) const

virtual void	GetValueAndDerivativeThreadPreProcess (ThreadIdType, bool) const

virtual bool	GetValueAndDerivativeThreadProcessSample (ThreadIdType, SizeValueType, const MovingImagePointType &, double, const ImageDerivativesType &) const

virtual void	GetValueAndDerivativeThreadPostProcess (ThreadIdType, bool) const

virtual void	SynchronizeTransforms () const

Protected Member Functions inherited from itk::SingleValuedCostFunction
	SingleValuedCostFunction ()=default

	~SingleValuedCostFunction () override

Protected Member Functions inherited from itk::CostFunctionTemplate< TInternalComputationValueType >
	CostFunctionTemplate ()=default

	~CostFunctionTemplate () override=default

Protected Member Functions inherited from itk::Object
	Object ()

	~Object () override

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &timeStamp)

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Static Protected Member Functions inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueMultiThreaded (void *workunitInfoAsVoid)

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueMultiThreadedPostProcess (void *workunitInfoAsVoid)

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueAndDerivativeMultiThreaded (void *workunitInfoAsVoid)

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	GetValueAndDerivativeMultiThreadedPostProcess (void *workunitInfoAsVoid)

Protected Attributes inherited from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >
HistogramSizeType	m_HistogramSize

MeasurementVectorType	m_LowerBound

MeasurementVectorType	m_UpperBound

double	m_UpperBoundIncreaseFactor

bool	m_LowerBoundSetByUser

bool	m_UpperBoundSetByUser

Protected Attributes inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
bool	m_UseFixedImageIndexes { false }

FixedImageIndexContainer	m_FixedImageIndexes

bool	m_UseFixedImageSamplesIntensityThreshold { false }

FixedImagePixelType	m_FixedImageSamplesIntensityThreshold

FixedImageSampleContainer	m_FixedImageSamples

SizeValueType	m_NumberOfParameters { 0 }

SizeValueType	m_NumberOfFixedImageSamples { 50000 }

SizeValueType	m_NumberOfPixelsCounted { 0 }

FixedImageConstPointer	m_FixedImage

MovingImageConstPointer	m_MovingImage

TransformPointer	m_Transform

TransformPointer *	m_ThreaderTransform

InterpolatorPointer	m_Interpolator

bool	m_ComputeGradient { true }

GradientImagePointer	m_GradientImage

FixedImageMaskConstPointer	m_FixedImageMask

MovingImageMaskConstPointer	m_MovingImageMask

ThreadIdType	m_NumberOfWorkUnits { 1 }

bool	m_UseAllPixels { false }

bool	m_UseSequentialSampling { false }

bool	m_ReseedIterator { false }

int	m_RandomSeed

bool	m_TransformIsBSpline { false }

SizeValueType	m_NumBSplineWeights { 0 }

BSplineTransformType::Pointer	m_BSplineTransform

BSplineTransformWeightsArrayType	m_BSplineTransformWeightsArray

BSplineTransformIndicesArrayType	m_BSplineTransformIndicesArray

MovingImagePointArrayType	m_BSplinePreTransformPointsArray

BooleanArrayType	m_WithinBSplineSupportRegionArray

BSplineParametersOffsetType	m_BSplineParametersOffset

bool	m_UseCachingOfBSplineWeights { true }

BSplineTransformWeightsType	m_BSplineTransformWeights

BSplineTransformIndexArrayType	m_BSplineTransformIndices

BSplineTransformWeightsType *	m_ThreaderBSplineTransformWeights

BSplineTransformIndexArrayType *	m_ThreaderBSplineTransformIndices

bool	m_InterpolatorIsBSpline { false }

BSplineInterpolatorType::Pointer	m_BSplineInterpolator

DerivativeFunctionType::Pointer	m_DerivativeCalculator

MultiThreaderType::Pointer	m_Threader

ConstantPointerWrapper *	m_ConstSelfWrapper

unsigned int *	m_ThreaderNumberOfMovingImageSamples { nullptr }

bool	m_WithinThreadPreProcess { false }

bool	m_WithinThreadPostProcess { false }

Protected Attributes inherited from itk::LightObject
std::atomic< int >	m_ReferenceCount

Static Protected Attributes inherited from itk::ImageToImageMetric< TFixedImage, TMovingImage >
static constexpr unsigned int	DeformationSplineOrder = 3

Detailed Description

template<typename TFixedImage, typename TMovingImage>
class itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >

Compares Histograms between two images to be registered to a Training Histogram.

This class is templated over the type of the fixed and moving images to be compared.

This metric computes the similarity between the histogram produced by two images overlapping and a training histogram.

It is to be sub-classed by the method of comparing the histograms.

Generally, the histogram from the training data is to be computed in exactly the same way as the histogram from the images to be compared are computed. Thus, the user can set the interpolator, region, two training images and the transform and the training histogram will be formed. OR, the user can simply calculate the training histogram separately and set it.

Warning: The Initialize function does nothing if the training histogram already exists. Thus repeated calls to the Initialize function do nothing after the first call. If you wish the training histogram to be re-calculated, you should set it to 0.

Author: Samson Timoner.

Definition at line 56 of file itkCompareHistogramImageToImageMetric.h.

Member Typedef Documentation

◆ ConstPointer

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::ConstPointer = SmartPointer<const Self>

Definition at line 66 of file itkCompareHistogramImageToImageMetric.h.

◆ DerivativeType

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::DerivativeType = typename Superclass::DerivativeType

Definition at line 82 of file itkCompareHistogramImageToImageMetric.h.

◆ FixedImageConstPointer

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageConstPointer = typename Superclass::FixedImageConstPointer

Definition at line 85 of file itkCompareHistogramImageToImageMetric.h.

◆ FixedImageRegionType

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageRegionType = typename Superclass::FixedImageRegionType

Definition at line 100 of file itkCompareHistogramImageToImageMetric.h.

◆ FixedImageType

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::FixedImageType = typename Superclass::FixedImageType

Definition at line 83 of file itkCompareHistogramImageToImageMetric.h.

◆ GradientPixelType

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GradientPixelType = typename Superclass::GradientPixelType

Definition at line 79 of file itkCompareHistogramImageToImageMetric.h.

◆ HistogramAbsoluteFrequencyType

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramAbsoluteFrequencyType = typename HistogramType::AbsoluteFrequencyType

Definition at line 91 of file itkCompareHistogramImageToImageMetric.h.

◆ HistogramFrequencyType

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramFrequencyType = HistogramAbsoluteFrequencyType

Definition at line 92 of file itkCompareHistogramImageToImageMetric.h.

◆ HistogramIteratorType

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramIteratorType = typename HistogramType::Iterator

Definition at line 94 of file itkCompareHistogramImageToImageMetric.h.

◆ HistogramMeasurementVectorType

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramMeasurementVectorType = typename HistogramType::MeasurementVectorType

Definition at line 90 of file itkCompareHistogramImageToImageMetric.h.

◆ HistogramPointerType

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramPointerType = typename HistogramType::Pointer

Definition at line 95 of file itkCompareHistogramImageToImageMetric.h.

◆ HistogramSizeType

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramSizeType = typename Superclass::HistogramSizeType

Definition at line 89 of file itkCompareHistogramImageToImageMetric.h.

◆ HistogramType

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::HistogramType = typename Superclass::HistogramType

Definition at line 88 of file itkCompareHistogramImageToImageMetric.h.

◆ InterpolatorPointer

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorPointer = typename Superclass::InterpolatorPointer

Definition at line 98 of file itkCompareHistogramImageToImageMetric.h.

◆ InterpolatorType

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::InterpolatorType = typename Superclass::InterpolatorType

Definition at line 97 of file itkCompareHistogramImageToImageMetric.h.

◆ MeasureType

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::MeasureType = typename Superclass::MeasureType

Definition at line 81 of file itkCompareHistogramImageToImageMetric.h.

◆ MovingImageConstPointer

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageConstPointer = typename Superclass::MovingImageConstPointer

Definition at line 86 of file itkCompareHistogramImageToImageMetric.h.

◆ MovingImageType

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::MovingImageType = typename Superclass::MovingImageType

Definition at line 84 of file itkCompareHistogramImageToImageMetric.h.

◆ Pointer

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::Pointer = SmartPointer<Self>

Definition at line 65 of file itkCompareHistogramImageToImageMetric.h.

◆ RealType

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::RealType = typename Superclass::RealType

Types transferred from the base class

Definition at line 72 of file itkCompareHistogramImageToImageMetric.h.

◆ Self

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::Self = CompareHistogramImageToImageMetric

Standard class type aliases.

Definition at line 63 of file itkCompareHistogramImageToImageMetric.h.

◆ Superclass

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::Superclass = HistogramImageToImageMetric<TFixedImage, TMovingImage>

Definition at line 64 of file itkCompareHistogramImageToImageMetric.h.

◆ TransformConstPointer

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformConstPointer = typename TransformType::ConstPointer

Definition at line 75 of file itkCompareHistogramImageToImageMetric.h.

◆ TransformJacobianType

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformJacobianType = typename Superclass::TransformJacobianType

Definition at line 78 of file itkCompareHistogramImageToImageMetric.h.

◆ TransformParametersType

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformParametersType = typename Superclass::TransformParametersType

Definition at line 77 of file itkCompareHistogramImageToImageMetric.h.

◆ TransformPointer

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformPointer = typename Superclass::TransformPointer

Definition at line 74 of file itkCompareHistogramImageToImageMetric.h.

◆ TransformType

template<typename TFixedImage , typename TMovingImage >

using itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::TransformType = typename Superclass::TransformType

Definition at line 73 of file itkCompareHistogramImageToImageMetric.h.

Constructor & Destructor Documentation

◆ CompareHistogramImageToImageMetric()

template<typename TFixedImage , typename TMovingImage >

itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::CompareHistogramImageToImageMetric ( )

protected

Constructor is protected to ensure that New() function is used to create instances.

◆ ~CompareHistogramImageToImageMetric()

template<typename TFixedImage , typename TMovingImage >

itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::~CompareHistogramImageToImageMetric ( )

overrideprotecteddefault

Get/Set the histogram to be used in the metric calculation

Member Function Documentation

◆ EvaluateMeasure()

template<typename TFixedImage , typename TMovingImage >

MeasureType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::EvaluateMeasure ( HistogramType & histogram ) const

overrideprotectedpure virtual

Evaluates the comparison histogram metric. All sub-classes must re-implement method.

Implemented in itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.

◆ FormTrainingHistogram()

template<typename TFixedImage , typename TMovingImage >

void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::FormTrainingHistogram ( )

protected

Form the Histogram for the Training data

◆ GetModifiableTrainingInterpolator()

template<typename TFixedImage , typename TMovingImage >

virtual InterpolatorType* itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetModifiableTrainingInterpolator ( )

virtual

Get/Set the histogram to be used in the metric calculation

◆ GetModifiableTrainingTransform()

template<typename TFixedImage , typename TMovingImage >

virtual TransformType* itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetModifiableTrainingTransform ( )

virtual

Get/Set the histogram to be used in the metric calculation

◆ GetNameOfClass()

template<typename TFixedImage , typename TMovingImage >

virtual const char* itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::HistogramImageToImageMetric< TFixedImage, TMovingImage >.

Reimplemented in itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.

◆ GetNumberOfParameters()

template<typename TFixedImage , typename TMovingImage >

unsigned int itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetNumberOfParameters ( ) const

inlineoverridevirtual

Return the number of parameters required by the Transform

Implements itk::CostFunctionTemplate< TInternalComputationValueType >.

Reimplemented in itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.

Definition at line 132 of file itkCompareHistogramImageToImageMetric.h.

◆ GetTrainingFixedImageRegion()

template<typename TFixedImage , typename TMovingImage >

virtual const FixedImageRegionType& itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetTrainingFixedImageRegion ( ) const

virtual

Get/Set the histogram to be used in the metric calculation

◆ GetTrainingHistogram()

template<typename TFixedImage , typename TMovingImage >

virtual const HistogramPointerType& itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetTrainingHistogram ( ) const

virtual

Get/Set the histogram to be used in the metric calculation

◆ GetTrainingInterpolator()

template<typename TFixedImage , typename TMovingImage >

virtual const InterpolatorType* itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetTrainingInterpolator ( ) const

virtual

Get/Set the histogram to be used in the metric calculation

◆ GetTrainingMovingImage()

template<typename TFixedImage , typename TMovingImage >

virtual const MovingImageType* itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetTrainingMovingImage ( ) const

virtual

Get/Set the histogram to be used in the metric calculation

◆ GetTrainingTransform()

template<typename TFixedImage , typename TMovingImage >

virtual const TransformType* itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::GetTrainingTransform ( ) const

virtual

Get/Set the histogram to be used in the metric calculation

◆ Initialize()

template<typename TFixedImage , typename TMovingImage >

void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::Initialize ( )

overridevirtual

Forms the histogram of the training images to prepare to evaluate the metric. Must set all parameters first.

Reimplemented from itk::ImageToImageMetric< TFixedImage, TMovingImage >.

Reimplemented in itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.

◆ PrintSelf()

template<typename TFixedImage , typename TMovingImage >

void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

overrideprotectedvirtual

Get/Set the histogram to be used in the metric calculation

Reimplemented from itk::CostFunctionTemplate< TInternalComputationValueType >.

Reimplemented in itk::KullbackLeiblerCompareHistogramImageToImageMetric< TFixedImage, TMovingImage >.

◆ SetTrainingFixedImage()

template<typename TFixedImage , typename TMovingImage >

virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingFixedImage ( const FixedImageType * _arg )

virtual

Get/Set the Training Fixed Image.

◆ SetTrainingFixedImageRegion()

template<typename TFixedImage , typename TMovingImage >

virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingFixedImageRegion ( FixedImageRegionType _arg )

virtual

Get/Set the region over which the training histogram will be computed

◆ SetTrainingHistogram()

template<typename TFixedImage , typename TMovingImage >

virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingHistogram ( HistogramPointerType _arg )

virtual

Get/Set the histogram to be used in the metric calculation

◆ SetTrainingInterpolator()

template<typename TFixedImage , typename TMovingImage >

virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingInterpolator ( InterpolatorType * _arg )

virtual

Get/Set the Interpolator.

◆ SetTrainingMovingImage()

template<typename TFixedImage , typename TMovingImage >

virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingMovingImage ( const MovingImageType * _arg )

virtual

Get/Set the Training Moving Image.

◆ SetTrainingTransform()

template<typename TFixedImage , typename TMovingImage >

virtual void itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::SetTrainingTransform ( TransformType * _arg )

virtual

Get/Set the Training Transform.

Member Data Documentation

◆ m_TrainingFixedImage

template<typename TFixedImage , typename TMovingImage >

FixedImageConstPointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_TrainingFixedImage

private

Get/Set the histogram to be used in the metric calculation

Definition at line 161 of file itkCompareHistogramImageToImageMetric.h.

◆ m_TrainingFixedImageRegion

template<typename TFixedImage , typename TMovingImage >

FixedImageRegionType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_TrainingFixedImageRegion

private

Get/Set the histogram to be used in the metric calculation

Definition at line 165 of file itkCompareHistogramImageToImageMetric.h.

◆ m_TrainingHistogram

template<typename TFixedImage , typename TMovingImage >

HistogramPointerType itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_TrainingHistogram

private

Get/Set the histogram to be used in the metric calculation

Definition at line 166 of file itkCompareHistogramImageToImageMetric.h.

◆ m_TrainingInterpolator

template<typename TFixedImage , typename TMovingImage >

InterpolatorPointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_TrainingInterpolator

private

Get/Set the histogram to be used in the metric calculation

Definition at line 164 of file itkCompareHistogramImageToImageMetric.h.

◆ m_TrainingMovingImage

template<typename TFixedImage , typename TMovingImage >

MovingImageConstPointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_TrainingMovingImage

private

Get/Set the histogram to be used in the metric calculation

Definition at line 162 of file itkCompareHistogramImageToImageMetric.h.

◆ m_TrainingTransform

template<typename TFixedImage , typename TMovingImage >

TransformPointer itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >::m_TrainingTransform

private

Get/Set the histogram to be used in the metric calculation

Definition at line 163 of file itkCompareHistogramImageToImageMetric.h.

The documentation for this class was generated from the following file:

itkCompareHistogramImageToImageMetric.h

Public Types

Public Member Functions

Additional Inherited Members

Detailed Description

template<typename TFixedImage, typename TMovingImage> class itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >

Member Typedef Documentation

◆ ConstPointer

◆ DerivativeType

◆ FixedImageConstPointer

◆ FixedImageRegionType

◆ FixedImageType

◆ GradientPixelType

◆ HistogramAbsoluteFrequencyType

◆ HistogramFrequencyType

◆ HistogramIteratorType

◆ HistogramMeasurementVectorType

◆ HistogramPointerType

◆ HistogramSizeType

◆ HistogramType

◆ InterpolatorPointer

◆ InterpolatorType

◆ MeasureType

◆ MovingImageConstPointer

◆ MovingImageType

◆ Pointer

◆ RealType

◆ Self

◆ Superclass

◆ TransformConstPointer

◆ TransformJacobianType

◆ TransformParametersType

◆ TransformPointer

◆ TransformType

Constructor & Destructor Documentation

◆ CompareHistogramImageToImageMetric()

◆ ~CompareHistogramImageToImageMetric()

Member Function Documentation

◆ EvaluateMeasure()

◆ FormTrainingHistogram()

◆ GetModifiableTrainingInterpolator()

◆ GetModifiableTrainingTransform()

◆ GetNameOfClass()

◆ GetNumberOfParameters()

◆ GetTrainingFixedImageRegion()

◆ GetTrainingHistogram()

◆ GetTrainingInterpolator()

◆ GetTrainingMovingImage()

◆ GetTrainingTransform()

◆ Initialize()

◆ PrintSelf()

◆ SetTrainingFixedImage()

◆ SetTrainingFixedImageRegion()

◆ SetTrainingHistogram()

◆ SetTrainingInterpolator()

◆ SetTrainingMovingImage()

◆ SetTrainingTransform()

Member Data Documentation

◆ m_TrainingFixedImage

◆ m_TrainingFixedImageRegion

◆ m_TrainingHistogram

◆ m_TrainingInterpolator

◆ m_TrainingMovingImage

◆ m_TrainingTransform

template<typename TFixedImage, typename TMovingImage>
class itk::CompareHistogramImageToImageMetric< TFixedImage, TMovingImage >