#include <itkFastMarchingExtensionImageFilter.h>

Inheritance diagram for itk::FastMarchingExtensionImageFilter< TLevelSet, TAuxValue, VAuxDimension, TSpeedImage >:

Collaboration diagram for itk::FastMarchingExtensionImageFilter< TLevelSet, TAuxValue, VAuxDimension, TSpeedImage >:

Public Types
using	AuxImagePointer = typename AuxVarType::AuxImagePointer

using	AuxImageType = typename AuxVarType::AuxImageType

using	AuxValueContainer = typename AuxVarType::AuxValueContainer

using	AuxValueType = typename AuxVarType::AuxValueType

using	AuxValueVectorType = typename AuxVarType::AuxValueVectorType

using	AuxVarType = AuxVarTypeDefault< TAuxValue, Self::AuxDimension, Self::SetDimension >

using	ConstPointer = SmartPointer< const Self >

using	IndexType = Index< Self::SetDimension >

using	LevelSetImageType = typename Superclass::LevelSetImageType

using	LevelSetType = typename Superclass::LevelSetType

using	Pointer = SmartPointer< Self >

using	Self = FastMarchingExtensionImageFilter

using	SpeedImageType = typename Superclass::SpeedImageType

using	Superclass = FastMarchingImageFilter< TLevelSet, TSpeedImage >

Public Types inherited from itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >
using	ConstPointer = SmartPointer< const Self >

using	IndexType = Index< Self::SetDimension >

using	LabelEnum = FastMarchingImageFilterEnums::Label

using	LabelImagePointer = typename LabelImageType::Pointer

using	LabelImageType = Image< LabelEnum, Self::SetDimension >

using	LevelSetImageType = typename LevelSetType::LevelSetImageType

using	LevelSetPointer = typename LevelSetType::LevelSetPointer

using	LevelSetType = LevelSetTypeDefault< TLevelSet >

using	NodeContainer = typename LevelSetType::NodeContainer

using	NodeContainerPointer = typename LevelSetType::NodeContainerPointer

using	NodeIndexType = typename NodeType::IndexType

using	NodeType = typename LevelSetType::NodeType

using	OutputDirectionType = typename LevelSetImageType::DirectionType

using	OutputPointType = typename LevelSetImageType::PointType

using	OutputRegionType = typename LevelSetImageType::RegionType

using	OutputSizeType = typename LevelSetImageType::SizeType

using	OutputSpacingType = typename LevelSetImageType::SpacingType

using	PixelType = typename LevelSetType::PixelType

using	Pointer = SmartPointer< Self >

using	Self = FastMarchingImageFilter

using	SpeedImageConstPointer = typename SpeedImageType::ConstPointer

using	SpeedImagePointer = typename SpeedImageType::Pointer

using	SpeedImageType = TSpeedImage

using	Superclass = ImageToImageFilter< TSpeedImage, TLevelSet >

Public Types inherited from itk::ImageToImageFilter< TSpeedImage, TLevelSet >
using	ConstPointer = SmartPointer< const Self >

using	InputImageConstPointer = typename InputImageType::ConstPointer

using	InputImagePixelType = typename InputImageType::PixelType

using	InputImagePointer = typename InputImageType::Pointer

using	InputImageRegionType = typename InputImageType::RegionType

using	InputImageType = TSpeedImage

using	OutputImagePixelType = typename Superclass::OutputImagePixelType

using	OutputImageRegionType = typename Superclass::OutputImageRegionType

using	Pointer = SmartPointer< Self >

using	Self = ImageToImageFilter

using	Superclass = ImageSource< TLevelSet >

Public Types inherited from itk::ImageSource< TLevelSet >
using	ConstPointer = SmartPointer< const Self >

using	DataObjectIdentifierType = Superclass::DataObjectIdentifierType

using	DataObjectPointer = DataObject::Pointer

using	DataObjectPointerArraySizeType = Superclass::DataObjectPointerArraySizeType

using	OutputImagePixelType = typename OutputImageType::PixelType

using	OutputImagePointer = typename OutputImageType::Pointer

using	OutputImageRegionType = typename OutputImageType::RegionType

using	OutputImageType = TLevelSet

using	Pointer = SmartPointer< Self >

using	Self = ImageSource

using	Superclass = ProcessObject

Public Types inherited from itk::ProcessObject
using	ConstPointer = SmartPointer< const Self >

using	DataObjectIdentifierType = DataObject::DataObjectIdentifierType

using	DataObjectPointer = DataObject::Pointer

using	DataObjectPointerArray = std::vector< DataObjectPointer >

using	DataObjectPointerArraySizeType = DataObjectPointerArray::size_type

using	MultiThreaderType = MultiThreaderBase

using	NameArray = std::vector< DataObjectIdentifierType >

using	Pointer = SmartPointer< Self >

using	Self = ProcessObject

using	Superclass = Object

Public Types inherited from itk::Object
using	ConstPointer = SmartPointer< const Self >

using	Pointer = SmartPointer< Self >

using	Self = Object

using	Superclass = LightObject

Public Types inherited from itk::LightObject
using	ConstPointer = SmartPointer< const Self >

using	Pointer = SmartPointer< Self >

using	Self = LightObject

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother () const

AuxValueContainer *	GetAuxiliaryAliveValues ()

AuxImageType *	GetAuxiliaryImage (unsigned int idx)

AuxValueContainer::Pointer	GetAuxiliaryTrialValues ()

virtual const char *	GetNameOfClass () const

void	SetAuxiliaryAliveValues (AuxValueContainer *values)

void	SetAuxiliaryTrialValues (AuxValueContainer *values)

Public Member Functions inherited from itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >
virtual ::itk::LightObject::Pointer	CreateAnother () const

template<typename TPixel >
void	SetBinaryMask (Image< TPixel, SetDimension > *iImage)

void	SetOutsidePoints (NodeContainer *points)

void	SetAlivePoints (NodeContainer *points)

NodeContainerPointer	GetAlivePoints ()

void	SetTrialPoints (NodeContainer *points)

NodeContainerPointer	GetTrialPoints ()

LabelImagePointer	GetLabelImage () const

void	SetSpeedConstant (double value)

virtual const double &	GetSpeedConstant () const

virtual void	SetNormalizationFactor (double _arg)

virtual double	GetNormalizationFactor () const

virtual void	SetStoppingValue (double _arg)

virtual const double &	GetStoppingValue () const

virtual void	SetCollectPoints (bool _arg)

virtual const bool &	GetCollectPoints () const

virtual void	CollectPointsOn ()

virtual void	CollectPointsOff ()

NodeContainerPointer	GetProcessedPoints () const

virtual void	SetOutputSize (const OutputSizeType &size)

virtual OutputSizeType	GetOutputSize () const

virtual void	SetOutputRegion (OutputRegionType _arg)

virtual const OutputRegionType &	GetOutputRegion () const

virtual void	SetOutputSpacing (OutputSpacingType _arg)

virtual const OutputSpacingType &	GetOutputSpacing () const

virtual void	SetOutputDirection (OutputDirectionType _arg)

virtual const OutputDirectionType &	GetOutputDirection () const

virtual void	SetOutputOrigin (OutputPointType _arg)

virtual const OutputPointType &	GetOutputOrigin () const

virtual void	SetOverrideOutputInformation (bool _arg)

virtual const bool &	GetOverrideOutputInformation () const

virtual void	OverrideOutputInformationOn ()

virtual void	OverrideOutputInformationOff ()

Public Member Functions inherited from itk::ImageToImageFilter< TSpeedImage, TLevelSet >
const InputImageType *	GetInput () const

const InputImageType *	GetInput (unsigned int idx) const

void	PopBackInput () override

void	PopFrontInput () override

virtual void	PushBackInput (const InputImageType *input)

virtual void	PushFrontInput (const InputImageType *input)

virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)

virtual void	SetInput (const InputImageType *input)

virtual void	SetInput (unsigned int, const TSpeedImage *image)

virtual void	SetCoordinateTolerance (double _arg)

virtual double	GetCoordinateTolerance () const

virtual void	SetDirectionTolerance (double _arg)

virtual double	GetDirectionTolerance () const

Public Member Functions inherited from itk::ImageSource< TLevelSet >
OutputImageType *	GetOutput ()

const OutputImageType *	GetOutput () const

OutputImageType *	GetOutput (unsigned int idx)

virtual void	GraftOutput (DataObject *graft)

virtual void	GraftOutput (const DataObjectIdentifierType &key, DataObject *graft)

virtual void	GraftNthOutput (unsigned int idx, DataObject *graft)

ProcessObject::DataObjectPointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override

ProcessObject::DataObjectPointer	MakeOutput (const ProcessObject::DataObjectIdentifierType &) override

Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()

virtual void	AbortGenerateDataOn ()

virtual const bool &	GetAbortGenerateData () const

DataObjectPointerArray	GetIndexedInputs ()

DataObjectPointerArray	GetIndexedOutputs ()

NameArray	GetInputNames () const

DataObjectPointerArray	GetInputs ()

DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const

DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const

DataObjectPointerArraySizeType	GetNumberOfInputs () const

DataObjectPointerArraySizeType	GetNumberOfOutputs () const

virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const

NameArray	GetOutputNames () const

DataObjectPointerArray	GetOutputs ()

virtual float	GetProgress () const

NameArray	GetRequiredInputNames () const

bool	HasInput (const DataObjectIdentifierType &key) const

bool	HasOutput (const DataObjectIdentifierType &key) const

void	IncrementProgress (float increment)

virtual void	PropagateRequestedRegion (DataObject *output)

virtual void	ResetPipeline ()

virtual void	SetAbortGenerateData (bool _arg)

virtual void	Update ()

virtual void	UpdateLargestPossibleRegion ()

virtual void	UpdateOutputData (DataObject *output)

virtual void	UpdateOutputInformation ()

void	UpdateProgress (float progress)

virtual void	SetReleaseDataFlag (bool val)

virtual bool	GetReleaseDataFlag () const

void	ReleaseDataFlagOn ()

void	ReleaseDataFlagOff ()

virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)

virtual const bool &	GetReleaseDataBeforeUpdateFlag () const

virtual void	ReleaseDataBeforeUpdateFlagOn ()

virtual void	ReleaseDataBeforeUpdateFlagOff ()

virtual void	SetNumberOfWorkUnits (ThreadIdType _arg)

virtual const ThreadIdType &	GetNumberOfWorkUnits () const

MultiThreaderType *	GetMultiThreader () const

void	SetMultiThreader (MultiThreaderType *threader)

virtual void	PrepareOutputs ()

Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)

unsigned long	AddObserver (const EventObject &event, Command *) const

unsigned long	AddObserver (const EventObject &event, std::function< void(const EventObject &)> function) const

virtual void	DebugOff () const

virtual void	DebugOn () const

Command *	GetCommand (unsigned long tag)

bool	GetDebug () const

MetaDataDictionary &	GetMetaDataDictionary ()

const MetaDataDictionary &	GetMetaDataDictionary () const

virtual ModifiedTimeType	GetMTime () const

virtual const TimeStamp &	GetTimeStamp () const

bool	HasObserver (const EventObject &event) const

void	InvokeEvent (const EventObject &)

void	InvokeEvent (const EventObject &) const

virtual void	Modified () const

void	Register () const override

void	RemoveAllObservers ()

void	RemoveObserver (unsigned long tag)

void	SetDebug (bool debugFlag) const

void	SetReferenceCount (int) override

void	UnRegister () const noexcept override

void	SetMetaDataDictionary (const MetaDataDictionary &rhs)

void	SetMetaDataDictionary (MetaDataDictionary &&rrhs)

virtual void	SetObjectName (std::string _arg)

virtual const std::string &	GetObjectName () const

Public Member Functions inherited from itk::LightObject
Pointer	Clone () const

virtual void	Delete ()

virtual int	GetReferenceCount () const

void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >
static Pointer	New ()

Static Public Member Functions inherited from itk::ImageToImageFilter< TSpeedImage, TLevelSet >
static void	SetGlobalDefaultDirectionTolerance (double)

static double	GetGlobalDefaultDirectionTolerance ()

static void	SetGlobalDefaultCoordinateTolerance (double)

static double	GetGlobalDefaultCoordinateTolerance ()

Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()

static void	GlobalWarningDisplayOff ()

static void	GlobalWarningDisplayOn ()

static Pointer	New ()

static void	SetGlobalWarningDisplay (bool val)

Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Static Public Attributes
static constexpr unsigned int	AuxDimension = VAuxDimension

static constexpr unsigned int	SetDimension = Superclass::SetDimension

Static Public Attributes inherited from itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >
static constexpr unsigned int	SetDimension = LevelSetType::SetDimension

static constexpr unsigned int	SpeedImageDimension = SpeedImageType::ImageDimension

Static Public Attributes inherited from itk::ImageToImageFilter< TSpeedImage, TLevelSet >
static constexpr unsigned int	InputImageDimension

static constexpr unsigned int	OutputImageDimension

Static Public Attributes inherited from itk::ImageSource< TLevelSet >
static constexpr unsigned int	OutputImageDimension

Protected Member Functions
void	EnlargeOutputRequestedRegion (DataObject *output) override

	FastMarchingExtensionImageFilter ()

void	GenerateOutputInformation () override

void	Initialize (LevelSetImageType *) override

void	PrintSelf (std::ostream &os, Indent indent) const override

double	UpdateValue (const IndexType &index, const SpeedImageType speed, LevelSetImageType output) override

	~FastMarchingExtensionImageFilter () override=default

Protected Member Functions inherited from itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >
	FastMarchingImageFilter ()

	~FastMarchingImageFilter () override=default

void	PrintSelf (std::ostream &os, Indent indent) const override

virtual void	Initialize (LevelSetImageType *)

virtual void	UpdateNeighbors (const IndexType &index, const SpeedImageType , LevelSetImageType )

virtual double	UpdateValue (const IndexType &index, const SpeedImageType , LevelSetImageType )

const AxisNodeType &	GetNodeUsedInCalculation (unsigned int idx) const

void	GenerateData () override

void	GenerateOutputInformation () override

void	EnlargeOutputRequestedRegion (DataObject *output) override

virtual const PixelType &	GetLargeValue () const

virtual const LevelSetIndexType &	GetStartIndex () const

virtual const LevelSetIndexType &	GetLastIndex () const

Protected Member Functions inherited from itk::ImageToImageFilter< TSpeedImage, TLevelSet >
void	PushBackInput (const DataObject *input) override

void	PushFrontInput (const DataObject *input) override

	ImageToImageFilter ()

	~ImageToImageFilter () override=default

void	PrintSelf (std::ostream &os, Indent indent) const override

void	VerifyInputInformation () ITKv5_CONST override

void	GenerateInputRequestedRegion () override

virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)

virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)

Protected Member Functions inherited from itk::ImageSource< TLevelSet >
	ImageSource ()

	~ImageSource () override=default

void	GenerateData () override

void	ClassicMultiThread (ThreadFunctionType callbackFunction)

virtual void	ThreadedGenerateData (const OutputImageRegionType &region, ThreadIdType threadId)

virtual void	DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread)

virtual void	AllocateOutputs ()

virtual void	BeforeThreadedGenerateData ()

virtual void	AfterThreadedGenerateData ()

virtual const ImageRegionSplitterBase *	GetImageRegionSplitter () const

virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)

virtual bool	GetDynamicMultiThreading () const

virtual void	SetDynamicMultiThreading (bool _arg)

virtual void	DynamicMultiThreadingOn ()

virtual void	DynamicMultiThreadingOff ()

Protected Member Functions inherited from itk::ProcessObject
	ProcessObject ()

	~ProcessObject () override

DataObject *	GetInput (const DataObjectIdentifierType &key)

const DataObject *	GetInput (const DataObjectIdentifierType &key) const

DataObject *	GetInput (DataObjectPointerArraySizeType idx)

const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const

virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)

virtual void	SetNthInput (DataObjectPointerArraySizeType idx, DataObject *input)

virtual void	AddInput (DataObject *input)

virtual void	RemoveInput (const DataObjectIdentifierType &key)

virtual void	RemoveInput (DataObjectPointerArraySizeType)

DataObject *	GetPrimaryInput ()

const DataObject *	GetPrimaryInput () const

virtual void	SetPrimaryInputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryInputName () const

virtual void	SetPrimaryInput (DataObject *object)

void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)

virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs () const

bool	RemoveRequiredInputName (const DataObjectIdentifierType &)

bool	IsRequiredInputName (const DataObjectIdentifierType &) const

void	SetRequiredInputNames (const NameArray &)

bool	AddRequiredInputName (const DataObjectIdentifierType &)

bool	AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)

void	AddOptionalInputName (const DataObjectIdentifierType &)

void	AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)

DataObject *	GetOutput (const DataObjectIdentifierType &key)

const DataObject *	GetOutput (const DataObjectIdentifierType &key) const

virtual void	SetPrimaryOutputName (const DataObjectIdentifierType &key)

virtual const char *	GetPrimaryOutputName () const

DataObject *	GetOutput (DataObjectPointerArraySizeType i)

const DataObject *	GetOutput (DataObjectPointerArraySizeType i) const

virtual void	SetOutput (const DataObjectIdentifierType &name, DataObject *output)

virtual void	RemoveOutput (const DataObjectIdentifierType &key)

DataObject *	GetPrimaryOutput ()

const DataObject *	GetPrimaryOutput () const

virtual void	SetPrimaryOutput (DataObject *object)

virtual void	SetNthOutput (DataObjectPointerArraySizeType idx, DataObject *output)

virtual void	AddOutput (DataObject *output)

virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)

virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)

virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs () const

void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)

DataObjectIdentifierType	MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const

DataObjectIdentifierType	MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const

DataObjectPointerArraySizeType	MakeIndexFromInputName (const DataObjectIdentifierType &name) const

DataObjectPointerArraySizeType	MakeIndexFromOutputName (const DataObjectIdentifierType &name) const

bool	IsIndexedInputName (const DataObjectIdentifierType &) const

bool	IsIndexedOutputName (const DataObjectIdentifierType &) const

virtual void	VerifyPreconditions () ITKv5_CONST

virtual void	GenerateOutputRequestedRegion (DataObject *output)

virtual void	PropagateResetPipeline ()

virtual void	ReleaseInputs ()

virtual void	CacheInputReleaseDataFlags ()

virtual void	RestoreInputReleaseDataFlags ()

virtual bool	GetThreaderUpdateProgress () const

virtual void	ThreaderUpdateProgressOn ()

virtual void	ThreaderUpdateProgressOff ()

virtual void	SetThreaderUpdateProgress (bool arg)

Protected Member Functions inherited from itk::Object
	Object ()

	~Object () override

bool	PrintObservers (std::ostream &os, Indent indent) const

virtual void	SetTimeStamp (const TimeStamp &timeStamp)

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Private Attributes
AuxValueContainer::Pointer	m_AuxAliveValues

AuxImageType *	m_AuxImages [AuxDimension]

AuxValueContainer::Pointer	m_AuxTrialValues

Additional Inherited Members
Protected Types inherited from itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >
using	LevelSetIndexType = typename LevelSetImageType::IndexType

Protected Types inherited from itk::ImageToImageFilter< TSpeedImage, TLevelSet >
using	InputToOutputRegionCopierType = ImageToImageFilterDetail::ImageRegionCopier< Self::OutputImageDimension, Self::InputImageDimension >

using	OutputToInputRegionCopierType = ImageToImageFilterDetail::ImageRegionCopier< Self::InputImageDimension, Self::OutputImageDimension >

Static Protected Member Functions inherited from itk::ImageSource< TLevelSet >
static const ImageRegionSplitterBase *	GetGlobalDefaultSplitter ()

static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	ThreaderCallback (void *arg)

Static Protected Member Functions inherited from itk::ProcessObject
static constexpr float	progressFixedToFloat (uint32_t fixed)

static uint32_t	progressFloatToFixed (float f)

Protected Attributes inherited from itk::FastMarchingImageFilter< TLevelSet, TSpeedImage >
OutputRegionType	m_BufferedRegion

LevelSetIndexType	m_StartIndex

LevelSetIndexType	m_LastIndex

Protected Attributes inherited from itk::ImageSource< TLevelSet >
bool	m_DynamicMultiThreading

Protected Attributes inherited from itk::ProcessObject
bool	m_Updating

TimeStamp	m_OutputInformationMTime

Protected Attributes inherited from itk::LightObject
std::atomic< int >	m_ReferenceCount

Detailed Description

template<typename TLevelSet, typename TAuxValue, unsigned int VAuxDimension = 1, typename TSpeedImage = Image<float, TLevelSet::ImageDimension>>
class itk::FastMarchingExtensionImageFilter< TLevelSet, TAuxValue, VAuxDimension, TSpeedImage >

Extend auxiliary variables smoothly using Fast Marching.

Fast marching can be used to extend auxiliary variables smoothly from the zero level set. Starting from an initial position on the front, this class simultaneously calculate the signed distance and extend a set of auxiliary values.

This class is templated over the level set image type, the auxiliary variable type and the number of auxiliary variables to extended. The initial front is specified by two containers: one containing the known points and one containing the trial points. The auxiliary variables on the front are represented by two auxiliary variable containers: one containing the value of the variables at the know points and on containing the value of the variables at the trail points.

Implementation of this class is based on Chapter 11 of "Level Set Methods and Fast Marching Methods", J.A. Sethian, Cambridge Press, Second edition, 1999.

For an alternative implementation, see itk::FastMarchingExtensionImageFilterBase.

See also: FastMarchingExtensionImageFilterBase; FastMarchingImageFilter; LevelSetTypeDefault; AuxVarTypeDefault

Definition at line 59 of file itkFastMarchingExtensionImageFilter.h.