ITK  5.2.0
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Public Types | Public Member Functions | Static Public Member Functions | Protected Member Functions | List of all members
itk::HistogramThresholdCalculator< THistogram, TOutput > Class Template Reference
Data Processing Objects » OperatorsGroup Filtering » | Module ITKThresholding

#include <itkHistogramThresholdCalculator.h>

+ Inheritance diagram for itk::HistogramThresholdCalculator< THistogram, TOutput >:
+ Collaboration diagram for itk::HistogramThresholdCalculator< THistogram, TOutput >:

Public Types

using ConstPointer = SmartPointer< const Self >
 
using DecoratedOutputType = SimpleDataObjectDecorator< OutputType >
 
using HistogramType = THistogram
 
using OutputType = TOutput
 
using Pointer = SmartPointer< Self >
 
using Self = HistogramThresholdCalculator
 
using Superclass = ProcessObject
 
- Public Types inherited from itk::ProcessObject
using ConstPointer = SmartPointer< const Self >
 
using DataObjectIdentifierType = DataObject::DataObjectIdentifierType
 
using DataObjectPointer = DataObject::Pointer
 
using DataObjectPointerArray = std::vector< DataObjectPointer >
 
using DataObjectPointerArraySizeType = DataObjectPointerArray::size_type
 
using MultiThreaderType = MultiThreaderBase
 
using NameArray = std::vector< DataObjectIdentifierType >
 
using Pointer = SmartPointer< Self >
 
using Self = ProcessObject
 
using Superclass = Object
 
- Public Types inherited from itk::Object
using ConstPointer = SmartPointer< const Self >
 
using Pointer = SmartPointer< Self >
 
using Self = Object
 
using Superclass = LightObject
 
- Public Types inherited from itk::LightObject
using ConstPointer = SmartPointer< const Self >
 
using Pointer = SmartPointer< Self >
 
using Self = LightObject
 

Public Member Functions

virtual ::itk::LightObject::Pointer CreateAnother () const
 
const HistogramType * GetInput () const
 
virtual const char * GetNameOfClass () const
 
DecoratedOutputType * GetOutput ()
 
const OutputType & GetThreshold ()
 
DataObject::Pointer MakeOutput (DataObjectPointerArraySizeType) override
 
void SetInput (const HistogramType *input)
 
- Public Member Functions inherited from itk::ProcessObject
virtual void AbortGenerateDataOff ()
 
virtual void AbortGenerateDataOn ()
 
virtual void EnlargeOutputRequestedRegion (DataObject *)
 
virtual const bool & GetAbortGenerateData () const
 
DataObjectPointerArray GetIndexedInputs ()
 
DataObjectPointerArray GetIndexedOutputs ()
 
NameArray GetInputNames () const
 
DataObjectPointerArray GetInputs ()
 
DataObjectPointerArraySizeType GetNumberOfIndexedInputs () const
 
DataObjectPointerArraySizeType GetNumberOfIndexedOutputs () const
 
DataObjectPointerArraySizeType GetNumberOfInputs () const
 
DataObjectPointerArraySizeType GetNumberOfOutputs () const
 
virtual DataObjectPointerArraySizeType GetNumberOfValidRequiredInputs () const
 
NameArray GetOutputNames () const
 
DataObjectPointerArray GetOutputs ()
 
virtual float GetProgress () const
 
NameArray GetRequiredInputNames () const
 
bool HasInput (const DataObjectIdentifierType &key) const
 
bool HasOutput (const DataObjectIdentifierType &key) const
 
void IncrementProgress (float increment)
 
virtual DataObjectPointer MakeOutput (const DataObjectIdentifierType &)
 
virtual void PropagateRequestedRegion (DataObject *output)
 
virtual void ResetPipeline ()
 
virtual void SetAbortGenerateData (bool _arg)
 
virtual void Update ()
 
virtual void UpdateLargestPossibleRegion ()
 
virtual void UpdateOutputData (DataObject *output)
 
virtual void UpdateOutputInformation ()
 
void UpdateProgress (float progress)
 
virtual void SetReleaseDataFlag (bool val)
 
virtual bool GetReleaseDataFlag () const
 
void ReleaseDataFlagOn ()
 
void ReleaseDataFlagOff ()
 
virtual void SetReleaseDataBeforeUpdateFlag (bool _arg)
 
virtual const bool & GetReleaseDataBeforeUpdateFlag () const
 
virtual void ReleaseDataBeforeUpdateFlagOn ()
 
virtual void ReleaseDataBeforeUpdateFlagOff ()
 
virtual void SetNumberOfWorkUnits (ThreadIdType _arg)
 
virtual const ThreadIdType & GetNumberOfWorkUnits () const
 
MultiThreaderType * GetMultiThreader () const
 
void SetMultiThreader (MultiThreaderType *threader)
 
virtual void PrepareOutputs ()
 
- Public Member Functions inherited from itk::Object
unsigned long AddObserver (const EventObject &event, Command *)
 
unsigned long AddObserver (const EventObject &event, Command *) const
 
unsigned long AddObserver (const EventObject &event, std::function< void(const EventObject &)> function) const
 
virtual void DebugOff () const
 
virtual void DebugOn () const
 
Command * GetCommand (unsigned long tag)
 
bool GetDebug () const
 
MetaDataDictionary & GetMetaDataDictionary ()
 
const MetaDataDictionary & GetMetaDataDictionary () const
 
virtual ModifiedTimeType GetMTime () const
 
virtual const TimeStamp & GetTimeStamp () const
 
bool HasObserver (const EventObject &event) const
 
void InvokeEvent (const EventObject &)
 
void InvokeEvent (const EventObject &) const
 
virtual void Modified () const
 
void Register () const override
 
void RemoveAllObservers ()
 
void RemoveObserver (unsigned long tag)
 
void SetDebug (bool debugFlag) const
 
void SetReferenceCount (int) override
 
void UnRegister () const noexcept override
 
void SetMetaDataDictionary (const MetaDataDictionary &rhs)
 
void SetMetaDataDictionary (MetaDataDictionary &&rrhs)
 
virtual void SetObjectName (std::string _arg)
 
virtual const std::string & GetObjectName () const
 
- Public Member Functions inherited from itk::LightObject
Pointer Clone () const
 
virtual void Delete ()
 
virtual int GetReferenceCount () const
 
void Print (std::ostream &os, Indent indent=0) const
 

Static Public Member Functions

static Pointer New ()
 
- Static Public Member Functions inherited from itk::Object
static bool GetGlobalWarningDisplay ()
 
static void GlobalWarningDisplayOff ()
 
static void GlobalWarningDisplayOn ()
 
static Pointer New ()
 
static void SetGlobalWarningDisplay (bool val)
 
- Static Public Member Functions inherited from itk::LightObject
static void BreakOnError ()
 
static Pointer New ()
 

Protected Member Functions

 HistogramThresholdCalculator ()
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
 ~HistogramThresholdCalculator () override=default
 
- Protected Member Functions inherited from itk::ProcessObject
 ProcessObject ()
 
 ~ProcessObject () override
 
void PrintSelf (std::ostream &os, Indent indent) const override
 
DataObject * GetInput (const DataObjectIdentifierType &key)
 
const DataObject * GetInput (const DataObjectIdentifierType &key) const
 
DataObject * GetInput (DataObjectPointerArraySizeType idx)
 
const DataObject * GetInput (DataObjectPointerArraySizeType idx) const
 
virtual void SetInput (const DataObjectIdentifierType &key, DataObject *input)
 
virtual void SetNthInput (DataObjectPointerArraySizeType idx, DataObject *input)
 
virtual void AddInput (DataObject *input)
 
virtual void PushBackInput (const DataObject *input)
 
virtual void PopBackInput ()
 
virtual void PushFrontInput (const DataObject *input)
 
virtual void PopFrontInput ()
 
virtual void RemoveInput (const DataObjectIdentifierType &key)
 
virtual void RemoveInput (DataObjectPointerArraySizeType)
 
DataObject * GetPrimaryInput ()
 
const DataObject * GetPrimaryInput () const
 
virtual void SetPrimaryInputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryInputName () const
 
virtual void SetPrimaryInput (DataObject *object)
 
void SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
 
virtual void SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
 
virtual const DataObjectPointerArraySizeType & GetNumberOfRequiredInputs () const
 
bool RemoveRequiredInputName (const DataObjectIdentifierType &)
 
bool IsRequiredInputName (const DataObjectIdentifierType &) const
 
void SetRequiredInputNames (const NameArray &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &)
 
bool AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
void AddOptionalInputName (const DataObjectIdentifierType &)
 
void AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
 
DataObject * GetOutput (const DataObjectIdentifierType &key)
 
const DataObject * GetOutput (const DataObjectIdentifierType &key) const
 
virtual void SetPrimaryOutputName (const DataObjectIdentifierType &key)
 
virtual const char * GetPrimaryOutputName () const
 
DataObject * GetOutput (DataObjectPointerArraySizeType i)
 
const DataObject * GetOutput (DataObjectPointerArraySizeType i) const
 
virtual void SetOutput (const DataObjectIdentifierType &name, DataObject *output)
 
virtual void RemoveOutput (const DataObjectIdentifierType &key)
 
DataObject * GetPrimaryOutput ()
 
const DataObject * GetPrimaryOutput () const
 
virtual void SetPrimaryOutput (DataObject *object)
 
virtual void SetNthOutput (DataObjectPointerArraySizeType idx, DataObject *output)
 
virtual void AddOutput (DataObject *output)
 
virtual void RemoveOutput (DataObjectPointerArraySizeType idx)
 
virtual void SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
 
virtual const DataObjectPointerArraySizeType & GetNumberOfRequiredOutputs () const
 
void SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
 
DataObjectIdentifierType MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectIdentifierType MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
 
DataObjectPointerArraySizeType MakeIndexFromInputName (const DataObjectIdentifierType &name) const
 
DataObjectPointerArraySizeType MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
 
bool IsIndexedInputName (const DataObjectIdentifierType &) const
 
bool IsIndexedOutputName (const DataObjectIdentifierType &) const
 
virtual void VerifyPreconditions () ITKv5_CONST
 
virtual void VerifyInputInformation () ITKv5_CONST
 
virtual void GenerateInputRequestedRegion ()
 
virtual void GenerateOutputRequestedRegion (DataObject *output)
 
virtual void GenerateOutputInformation ()
 
virtual void GenerateData ()
 
virtual void PropagateResetPipeline ()
 
virtual void ReleaseInputs ()
 
virtual void CacheInputReleaseDataFlags ()
 
virtual void RestoreInputReleaseDataFlags ()
 
virtual bool GetThreaderUpdateProgress () const
 
virtual void ThreaderUpdateProgressOn ()
 
virtual void ThreaderUpdateProgressOff ()
 
virtual void SetThreaderUpdateProgress (bool arg)
 
- Protected Member Functions inherited from itk::Object
 Object ()
 
 ~Object () override
 
bool PrintObservers (std::ostream &os, Indent indent) const
 
virtual void SetTimeStamp (const TimeStamp &timeStamp)
 
- Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer InternalClone () const
 
 LightObject ()
 
virtual void PrintHeader (std::ostream &os, Indent indent) const
 
virtual void PrintTrailer (std::ostream &os, Indent indent) const
 
virtual ~LightObject ()
 

Additional Inherited Members

- Static Protected Member Functions inherited from itk::ProcessObject
static constexpr float progressFixedToFloat (uint32_t fixed)
 
static uint32_t progressFloatToFixed (float f)
 
- Protected Attributes inherited from itk::ProcessObject
bool m_Updating
 
TimeStamp m_OutputInformationMTime
 
- Protected Attributes inherited from itk::LightObject
std::atomic< int > m_ReferenceCount
 

Detailed Description

template<typename THistogram, typename TOutput>
class itk::HistogramThresholdCalculator< THistogram, TOutput >

Base class to compute a threshold value based on the histogram of an image.

Author
Richard Beare. Department of Medicine, Monash University, Melbourne, Australia.
Gaetan Lehmann. Biologie du Developpement et de la Reproduction, INRA de Jouy-en-Josas, France.

This implementation was taken from the Insight Journal paper: https://www.insight-journal.org/browse/publication/811

Definition at line 46 of file itkHistogramThresholdCalculator.h.

Member Typedef Documentation

◆ ConstPointer

template<typename THistogram , typename TOutput >
using itk::HistogramThresholdCalculator< THistogram, TOutput >::ConstPointer = SmartPointer<const Self>

Definition at line 55 of file itkHistogramThresholdCalculator.h.

◆ DecoratedOutputType

template<typename THistogram , typename TOutput >
using itk::HistogramThresholdCalculator< THistogram, TOutput >::DecoratedOutputType = SimpleDataObjectDecorator<OutputType>

Definition at line 68 of file itkHistogramThresholdCalculator.h.

◆ HistogramType

template<typename THistogram , typename TOutput >
using itk::HistogramThresholdCalculator< THistogram, TOutput >::HistogramType = THistogram

Type definition for the input histogram.

Definition at line 64 of file itkHistogramThresholdCalculator.h.

◆ OutputType

template<typename THistogram , typename TOutput >
using itk::HistogramThresholdCalculator< THistogram, TOutput >::OutputType = TOutput

output object type

Definition at line 67 of file itkHistogramThresholdCalculator.h.

◆ Pointer

template<typename THistogram , typename TOutput >
using itk::HistogramThresholdCalculator< THistogram, TOutput >::Pointer = SmartPointer<Self>

Definition at line 54 of file itkHistogramThresholdCalculator.h.

◆ Self

template<typename THistogram , typename TOutput >
using itk::HistogramThresholdCalculator< THistogram, TOutput >::Self = HistogramThresholdCalculator

Standard class type aliases.

Definition at line 52 of file itkHistogramThresholdCalculator.h.

◆ Superclass

template<typename THistogram , typename TOutput >
using itk::HistogramThresholdCalculator< THistogram, TOutput >::Superclass = ProcessObject

Definition at line 53 of file itkHistogramThresholdCalculator.h.

Constructor & Destructor Documentation

◆ HistogramThresholdCalculator()

template<typename THistogram , typename TOutput >
itk::HistogramThresholdCalculator< THistogram, TOutput >::HistogramThresholdCalculator ( )
inlineprotected

Definition at line 114 of file itkHistogramThresholdCalculator.h.

References itk::HistogramThresholdCalculator< THistogram, TOutput >::MakeOutput(), itk::ProcessObject::SetNthOutput(), and itk::ProcessObject::SetNumberOfRequiredOutputs().

◆ ~HistogramThresholdCalculator()

template<typename THistogram , typename TOutput >
itk::HistogramThresholdCalculator< THistogram, TOutput >::~HistogramThresholdCalculator ( )
overrideprotecteddefault

Member Function Documentation

◆ CreateAnother()

template<typename THistogram , typename TOutput >
virtual::itk::LightObject::Pointer itk::HistogramThresholdCalculator< THistogram, TOutput >::CreateAnother ( ) const
virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

Reimplemented in itk::IntermodesThresholdCalculator< THistogram, TOutput >, itk::LiThresholdCalculator< THistogram, TOutput >, itk::YenThresholdCalculator< THistogram, TOutput >, itk::IsoDataThresholdCalculator< THistogram, TOutput >, itk::HuangThresholdCalculator< THistogram, TOutput >, itk::MaximumEntropyThresholdCalculator< THistogram, TOutput >, itk::TriangleThresholdCalculator< THistogram, TOutput >, itk::KittlerIllingworthThresholdCalculator< THistogram, TOutput >, itk::RenyiEntropyThresholdCalculator< THistogram, TOutput >, itk::MomentsThresholdCalculator< THistogram, TOutput >, itk::ShanbhagThresholdCalculator< THistogram, TOutput >, and itk::OtsuThresholdCalculator< THistogram, TOutput >.

◆ GetInput()

template<typename THistogram , typename TOutput >
const HistogramType* itk::HistogramThresholdCalculator< THistogram, TOutput >::GetInput ( ) const
inline

Definition at line 78 of file itkHistogramThresholdCalculator.h.

References itk::ProcessObject::GetInput(), and itk::ProcessObject::GetNumberOfInputs().

◆ GetNameOfClass()

template<typename THistogram , typename TOutput >
virtual const char* itk::HistogramThresholdCalculator< THistogram, TOutput >::GetNameOfClass ( ) const
virtual

Run-time type information (and related methods).

Reimplemented from itk::ProcessObject.

Reimplemented in itk::IntermodesThresholdCalculator< THistogram, TOutput >, itk::LiThresholdCalculator< THistogram, TOutput >, itk::YenThresholdCalculator< THistogram, TOutput >, itk::IsoDataThresholdCalculator< THistogram, TOutput >, itk::HuangThresholdCalculator< THistogram, TOutput >, itk::MaximumEntropyThresholdCalculator< THistogram, TOutput >, itk::TriangleThresholdCalculator< THistogram, TOutput >, itk::KittlerIllingworthThresholdCalculator< THistogram, TOutput >, itk::RenyiEntropyThresholdCalculator< THistogram, TOutput >, itk::MomentsThresholdCalculator< THistogram, TOutput >, itk::ShanbhagThresholdCalculator< THistogram, TOutput >, and itk::OtsuThresholdCalculator< THistogram, TOutput >.

◆ GetOutput()

template<typename THistogram , typename TOutput >
DecoratedOutputType* itk::HistogramThresholdCalculator< THistogram, TOutput >::GetOutput ( )
inline

Definition at line 88 of file itkHistogramThresholdCalculator.h.

References itk::ProcessObject::GetNumberOfOutputs(), and itk::ProcessObject::GetOutput().

◆ GetThreshold()

template<typename THistogram , typename TOutput >
const OutputType& itk::HistogramThresholdCalculator< THistogram, TOutput >::GetThreshold ( )
inline

Definition at line 104 of file itkHistogramThresholdCalculator.h.

References itk::ProcessObject::GetNumberOfOutputs(), and itk::ProcessObject::GetOutput().

◆ MakeOutput()

template<typename THistogram , typename TOutput >
DataObject::Pointer itk::HistogramThresholdCalculator< THistogram, TOutput >::MakeOutput ( DataObjectPointerArraySizeType  idx)
inlineoverridevirtual

Make a DataObject of the correct type to used as the specified output.

Every ProcessObject subclass must be able to create a DataObject that can be used as a specified output. This method is automatically called when DataObject::DisconnectPipeline() is called. DataObject::DisconnectPipeline, disconnects a data object from being an output of its current source. When the data object is disconnected, the ProcessObject needs to construct a replacement output data object so that the ProcessObject is in a valid state. So DataObject::DisconnectPipeline eventually calls ProcessObject::MakeOutput. Note that MakeOutput always returns a itkSmartPointer to a DataObject. ImageSource and MeshSource override this method to create the correct type of image and mesh respectively. If a filter has multiple outputs of different types, then that filter must provide an implementation of MakeOutput().

Reimplemented from itk::ProcessObject.

Definition at line 98 of file itkHistogramThresholdCalculator.h.

References itk::SmartPointer< TObjectType >::GetPointer(), and itk::SimpleDataObjectDecorator< T >::New().

Referenced by itk::HistogramThresholdCalculator< THistogram, TOutput >::HistogramThresholdCalculator().

◆ New()

template<typename THistogram , typename TOutput >
static Pointer itk::HistogramThresholdCalculator< THistogram, TOutput >::New ( )
static

Method for creation through the object factory.

◆ SetInput() [1/2]

template<typename THistogram , typename TOutput >
virtual void itk::ProcessObject::SetInput
protected

Protected method for setting indexed and named inputs.

Subclasses make use of them for setting input. As this method only used the base DataObject pointer, derived classes should expose a type check methods.

◆ SetInput() [2/2]

template<typename THistogram , typename TOutput >
void itk::HistogramThresholdCalculator< THistogram, TOutput >::SetInput ( const HistogramType *  input)
inline

Definition at line 71 of file itkHistogramThresholdCalculator.h.

References itk::ProcessObject::SetNthInput().

The documentation for this class was generated from the following file:
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