#include <itkLevelSetFunctionWithRefitTerm.h>

Inheritance diagram for itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >:

Collaboration diagram for itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >:

Public Types
using	ConstPointer = SmartPointer< const Self >

using	FloatOffsetType = typename Superclass::FloatOffsetType

using	GlobalDataStruct = typename Superclass::GlobalDataStruct

using	ImageType = typename Superclass::ImageType

using	IndexType = typename ImageType::IndexType

using	NeighborhoodScalesType = typename Superclass::NeighborhoodScalesType

using	NeighborhoodSizeValueType = typename NeighborhoodType::SizeValueType

using	NeighborhoodType = typename Superclass::NeighborhoodType

using	NodeType = typename SparseImageType::NodeType

using	NormalVectorType = typename NodeType::NodeDataType

using	Pointer = SmartPointer< Self >

using	ScalarValueType = typename Superclass::ScalarValueType

using	Self = LevelSetFunctionWithRefitTerm

using	SparseImageType = TSparseImageType

using	Superclass = LevelSetFunction< TImageType >

using	TimeStepType = typename Superclass::TimeStepType

Public Types inherited from itk::LevelSetFunction< TImageType >
using	ConstPointer = SmartPointer< const Self >

using	FloatOffsetType = typename Superclass::FloatOffsetType

using	ImageType = typename Superclass::ImageType

using	NeighborhoodScalesType = typename Superclass::NeighborhoodScalesType

using	NeighborhoodType = typename Superclass::NeighborhoodType

using	PixelRealType = typename Superclass::PixelRealType

using	PixelType = typename Superclass::PixelType

using	Pointer = SmartPointer< Self >

using	RadiusType = typename Superclass::RadiusType

using	ScalarValueType = PixelType

using	Self = LevelSetFunction

using	Superclass = FiniteDifferenceFunction< TImageType >

using	TimeStepType = double

using	VectorType = FixedArray< ScalarValueType, Self::ImageDimension >

Public Types inherited from itk::FiniteDifferenceFunction< TImageType >
using	ConstPointer = SmartPointer< const Self >

using	DefaultBoundaryConditionType = ZeroFluxNeumannBoundaryCondition< ImageType >

using	FloatOffsetType = Vector< float, Self::ImageDimension >

using	ImageType = TImageType

using	NeighborhoodScalesType = Vector< PixelRealType, Self::ImageDimension >

using	NeighborhoodType = ConstNeighborhoodIterator< TImageType, DefaultBoundaryConditionType >

using	PixelRealType = double

using	PixelType = typename ImageType::PixelType

using	Pointer = SmartPointer< Self >

using	RadiusType = typename ConstNeighborhoodIterator< TImageType >::RadiusType

using	Self = FiniteDifferenceFunction

using	Superclass = LightObject

using	TimeStepType = double

Public Types inherited from itk::LightObject
using	ConstPointer = SmartPointer< const Self >

using	Pointer = SmartPointer< Self >

using	Self = LightObject

Public Member Functions
TimeStepType	ComputeGlobalTimeStep (void *GlobalData) const override

virtual ::itk::LightObject::Pointer	CreateAnother () const

virtual const char *	GetNameOfClass () const

SparseImageType *	GetSparseTargetImage () const

void	SetOtherPropagationWeight (const ScalarValueType w)

void	SetRefitWeight (const ScalarValueType w)

void	SetSparseTargetImage (SparseImageType *im)

Public Member Functions inherited from itk::LevelSetFunction< TImageType >
virtual VectorType	AdvectionField (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *=0) const

virtual ScalarValueType	CurvatureSpeed (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *=nullptr) const

virtual ScalarValueType	LaplacianSmoothingSpeed (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *=0) const

virtual ScalarValueType	PropagationSpeed (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *=0) const

virtual void	SetAdvectionWeight (const ScalarValueType a)

ScalarValueType	GetAdvectionWeight () const

virtual void	SetPropagationWeight (const ScalarValueType p)

ScalarValueType	GetPropagationWeight () const

virtual void	SetCurvatureWeight (const ScalarValueType c)

ScalarValueType	GetCurvatureWeight () const

void	SetLaplacianSmoothingWeight (const ScalarValueType c)

ScalarValueType	GetLaplacianSmoothingWeight () const

void	SetEpsilonMagnitude (const ScalarValueType e)

ScalarValueType	GetEpsilonMagnitude () const

PixelType	ComputeUpdate (const NeighborhoodType &it, void *globalData, const FloatOffsetType &=FloatOffsetType(0.0)) override

void *	GetGlobalDataPointer () const override

virtual void	Initialize (const RadiusType &r)

void	ReleaseGlobalDataPointer (void *GlobalData) const override

virtual ScalarValueType	ComputeCurvatureTerm (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0)

virtual ScalarValueType	ComputeMeanCurvature (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0)

virtual ScalarValueType	ComputeMinimalCurvature (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0)

virtual ScalarValueType	Compute3DMinimalCurvature (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *gd=0)

void	SetUseMinimalCurvature (bool b)

bool	GetUseMinimalCurvature () const

void	UseMinimalCurvatureOn ()

void	UseMinimalCurvatureOff ()

Public Member Functions inherited from itk::FiniteDifferenceFunction< TImageType >
const NeighborhoodScalesType	ComputeNeighborhoodScales () const

const RadiusType &	GetRadius () const

void	GetScaleCoefficients (PixelRealType vals[ImageDimension]) const

virtual void	InitializeIteration ()

void	SetRadius (const RadiusType &r)

void	SetScaleCoefficients (const PixelRealType vals[ImageDimension])

Public Member Functions inherited from itk::LightObject
Pointer	Clone () const

virtual void	Delete ()

virtual int	GetReferenceCount () const

void	Print (std::ostream &os, Indent indent=0) const

virtual void	Register () const

virtual void	SetReferenceCount (int)

virtual void	UnRegister () const noexcept

Static Public Member Functions
static Pointer	New ()

Static Public Member Functions inherited from itk::LevelSetFunction< TImageType >
static Pointer	New ()

static void	SetMaximumCurvatureTimeStep (double n)

static double	GetMaximumCurvatureTimeStep ()

static void	SetMaximumPropagationTimeStep (double n)

static double	GetMaximumPropagationTimeStep ()

Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()

static Pointer	New ()

Protected Member Functions
ScalarValueType	ComputeCurvature (const NeighborhoodType &) const

	LevelSetFunctionWithRefitTerm ()

virtual ScalarValueType	OtherPropagationSpeed (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *=0) const

void	PrintSelf (std::ostream &os, Indent indent) const override

ScalarValueType	PropagationSpeed (const NeighborhoodType &, const FloatOffsetType &, GlobalDataStruct *=0) const override

Protected Member Functions inherited from itk::LevelSetFunction< TImageType >
	LevelSetFunction ()

	~LevelSetFunction () override=default

Protected Member Functions inherited from itk::FiniteDifferenceFunction< TImageType >
	FiniteDifferenceFunction ()

	~FiniteDifferenceFunction () override=default

Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const

	LightObject ()

virtual void	PrintHeader (std::ostream &os, Indent indent) const

virtual void	PrintTrailer (std::ostream &os, Indent indent) const

virtual	~LightObject ()

Protected Attributes
ScalarValueType	m_OtherPropagationWeight

ScalarValueType	m_RefitWeight

Protected Attributes inherited from itk::LevelSetFunction< TImageType >
std::slice	x_slice [Self::ImageDimension]

OffsetValueType	m_Center { 0 }

OffsetValueType	m_xStride [Self::ImageDimension]

bool	m_UseMinimalCurvature { false }

ScalarValueType	m_EpsilonMagnitude

ScalarValueType	m_AdvectionWeight

ScalarValueType	m_PropagationWeight

ScalarValueType	m_CurvatureWeight

ScalarValueType	m_LaplacianSmoothingWeight

Protected Attributes inherited from itk::FiniteDifferenceFunction< TImageType >
RadiusType	m_Radius

PixelRealType	m_ScaleCoefficients [ImageDimension]

Protected Attributes inherited from itk::LightObject
std::atomic< int >	m_ReferenceCount

Private Attributes
ScalarValueType	m_MinVectorNorm

SparseImageType::Pointer	m_SparseTargetImage

Static Private Attributes
static const ScalarValueType	m_DimConst

static const NeighborhoodSizeValueType	m_NumVertex

Additional Inherited Members
Static Public Attributes inherited from itk::LevelSetFunction< TImageType >
static constexpr unsigned int	ImageDimension = Superclass::ImageDimension

Static Public Attributes inherited from itk::FiniteDifferenceFunction< TImageType >
static constexpr unsigned int	ImageDimension = ImageType::ImageDimension

Static Protected Member Functions inherited from itk::LevelSetFunction< TImageType >
static VectorType	InitializeZeroVectorConstant ()

Static Protected Attributes inherited from itk::LevelSetFunction< TImageType >
static double	m_WaveDT

static double	m_DT

static VectorType	m_ZeroVectorConstant

Detailed Description

template<typename TImageType, typename TSparseImageType>
class itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >

This class extends the LevelSetFunction class by adding a grow term based on a target curvature stored in a sparse image.

: We extend the LevelSetFunction class to add a refitting term. This refitting term forces the curvature of the level set interface to match a prescribed curvature. The prescribed curvature is provided in a sparse image format. The NodeType for the sparse image should contain the member variables m_Curvature and m_CurvatureFlag. The refitting term is defined as part of the propagation term of the original LevelSetFunction. To this purpose we defined the PropagationSpeed method which computes the refitting term and also adds to this term the value returned by the new virtual OtherPropagationSpeed. Therefore, classes derived from this class MUST NOT overwrite the PropagationSpeed method. Instead classes wishing to define a propagation term must define OtherPropagationSpeed.

IMPORTANT: Subclasses MUST NOT overwrite the PropagationSpeed method. Define OtherPropagationSpeed instead.

Definition at line 52 of file itkLevelSetFunctionWithRefitTerm.h.

Member Typedef Documentation

◆ ConstPointer

template<typename TImageType , typename TSparseImageType >

using itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::ConstPointer = SmartPointer<const Self>

Definition at line 61 of file itkLevelSetFunctionWithRefitTerm.h.

◆ FloatOffsetType

template<typename TImageType , typename TSparseImageType >

using itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::FloatOffsetType = typename Superclass::FloatOffsetType

Definition at line 71 of file itkLevelSetFunctionWithRefitTerm.h.

◆ GlobalDataStruct

template<typename TImageType , typename TSparseImageType >

using itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::GlobalDataStruct = typename Superclass::GlobalDataStruct

Definition at line 73 of file itkLevelSetFunctionWithRefitTerm.h.

◆ ImageType

template<typename TImageType , typename TSparseImageType >

using itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::ImageType = typename Superclass::ImageType

Extract some parameters from the superclass.

Definition at line 70 of file itkLevelSetFunctionWithRefitTerm.h.

◆ IndexType

template<typename TImageType , typename TSparseImageType >

using itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::IndexType = typename ImageType::IndexType

Index type derived from the ImageType.

Definition at line 81 of file itkLevelSetFunctionWithRefitTerm.h.

◆ NeighborhoodScalesType

template<typename TImageType , typename TSparseImageType >

using itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::NeighborhoodScalesType = typename Superclass::NeighborhoodScalesType

Definition at line 75 of file itkLevelSetFunctionWithRefitTerm.h.

◆ NeighborhoodSizeValueType

template<typename TImageType , typename TSparseImageType >

using itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::NeighborhoodSizeValueType = typename NeighborhoodType::SizeValueType

Definition at line 78 of file itkLevelSetFunctionWithRefitTerm.h.

◆ NeighborhoodType

template<typename TImageType , typename TSparseImageType >

using itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::NeighborhoodType = typename Superclass::NeighborhoodType

Definition at line 74 of file itkLevelSetFunctionWithRefitTerm.h.

◆ NodeType

template<typename TImageType , typename TSparseImageType >

using itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::NodeType = typename SparseImageType::NodeType

The node type of the sparse image.

Definition at line 87 of file itkLevelSetFunctionWithRefitTerm.h.

◆ NormalVectorType

template<typename TImageType , typename TSparseImageType >

using itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::NormalVectorType = typename NodeType::NodeDataType

The type for the normal vectors of the level set image.

Definition at line 90 of file itkLevelSetFunctionWithRefitTerm.h.

◆ Pointer

template<typename TImageType , typename TSparseImageType >

using itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::Pointer = SmartPointer<Self>

Definition at line 60 of file itkLevelSetFunctionWithRefitTerm.h.

◆ ScalarValueType

template<typename TImageType , typename TSparseImageType >

using itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::ScalarValueType = typename Superclass::ScalarValueType

Definition at line 72 of file itkLevelSetFunctionWithRefitTerm.h.

◆ Self

template<typename TImageType , typename TSparseImageType >

using itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::Self = LevelSetFunctionWithRefitTerm

Standard class type aliases.

Definition at line 58 of file itkLevelSetFunctionWithRefitTerm.h.

◆ SparseImageType

template<typename TImageType , typename TSparseImageType >

using itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::SparseImageType = TSparseImageType

The sparse image type used for the curvature target.

Definition at line 84 of file itkLevelSetFunctionWithRefitTerm.h.

◆ Superclass

template<typename TImageType , typename TSparseImageType >

using itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::Superclass = LevelSetFunction<TImageType>

Definition at line 59 of file itkLevelSetFunctionWithRefitTerm.h.

◆ TimeStepType

template<typename TImageType , typename TSparseImageType >

using itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::TimeStepType = typename Superclass::TimeStepType

Definition at line 76 of file itkLevelSetFunctionWithRefitTerm.h.

Constructor & Destructor Documentation

◆ LevelSetFunctionWithRefitTerm()

template<typename TImageType , typename TSparseImageType >

itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::LevelSetFunctionWithRefitTerm ( )

protected

Member Function Documentation

◆ ComputeCurvature()

template<typename TImageType , typename TSparseImageType >

ScalarValueType itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::ComputeCurvature ( const NeighborhoodType & ) const

protected

Computes the curvature of a level set neighborhood in a way that matches the curvature computation from normal vectors.

◆ ComputeGlobalTimeStep()

template<typename TImageType , typename TSparseImageType >

TimeStepType itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::ComputeGlobalTimeStep ( void * GlobalData ) const

overridevirtual

Computes the time step for an update given a global data structure. This calls the ComputeGlobalTimeStep method defined in LevelSetFunction and then imposes our own restrictions for the refitting term on the returned value.

Reimplemented from itk::LevelSetFunction< TImageType >.

◆ CreateAnother()

template<typename TImageType , typename TSparseImageType >

virtual::itk::LightObject::Pointer itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::CreateAnother ( ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::LevelSetFunction< TImageType >.

◆ GetNameOfClass()

template<typename TImageType , typename TSparseImageType >

virtual const char* itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods)

Reimplemented from itk::LevelSetFunction< TImageType >.

◆ GetSparseTargetImage()

template<typename TImageType , typename TSparseImageType >

SparseImageType* itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::GetSparseTargetImage ( ) const

inline

Returns the sparse image.

Definition at line 117 of file itkLevelSetFunctionWithRefitTerm.h.

◆ New()

template<typename TImageType , typename TSparseImageType >

static Pointer itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::New ( )

static

Standard New macro.

◆ OtherPropagationSpeed()

template<typename TImageType , typename TSparseImageType >

virtual ScalarValueType itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::OtherPropagationSpeed	(	const NeighborhoodType &	,
		const FloatOffsetType &	,
		GlobalDataStruct *	= `0`
	)		const

inlineprotectedvirtual

Called by PropagationSpeed and added on to the refitting term. Function classes derived from this class should define this method for their propagation speed, NOT the actual PropagationSpeed method.

Definition at line 156 of file itkLevelSetFunctionWithRefitTerm.h.

References itk::NumericTraits< T >::ZeroValue().

◆ PrintSelf()

template<typename TImageType , typename TSparseImageType >

void itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::PrintSelf	(	std::ostream &	os,
		Indent	indent
	)		const

overrideprotectedvirtual

Constants used in the time step calculation.

Reimplemented from itk::LevelSetFunction< TImageType >.

◆ PropagationSpeed()

template<typename TImageType , typename TSparseImageType >

ScalarValueType itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::PropagationSpeed	(	const NeighborhoodType &	,
		const FloatOffsetType &	,
		GlobalDataStruct *	= `0`
	)		const

overrideprotected

Defines the virtual function in LevelSetFunction to add the refitting term. This function also calls OtherPropagationSpeed to provide a mechanism for subclasses to define other propagation terms.

◆ SetOtherPropagationWeight()

template<typename TImageType , typename TSparseImageType >

void itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::SetOtherPropagationWeight ( const ScalarValueType w )

inline

This is the weight for propagation terms (other than refitting) that can be defined by subclasses.

Definition at line 102 of file itkLevelSetFunctionWithRefitTerm.h.

◆ SetRefitWeight()

template<typename TImageType , typename TSparseImageType >

void itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::SetRefitWeight ( const ScalarValueType w )

inline

Set the relative weight of the refitting term.

Definition at line 94 of file itkLevelSetFunctionWithRefitTerm.h.

◆ SetSparseTargetImage()

template<typename TImageType , typename TSparseImageType >

void itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::SetSparseTargetImage ( SparseImageType * im )

inline

Sets the sparse image which has nodes containing the member variable m_Curvature used in refitting.

Definition at line 110 of file itkLevelSetFunctionWithRefitTerm.h.

Member Data Documentation

◆ m_DimConst

template<typename TImageType , typename TSparseImageType >

const ScalarValueType itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::m_DimConst

staticprivate

Definition at line 170 of file itkLevelSetFunctionWithRefitTerm.h.

◆ m_MinVectorNorm

template<typename TImageType , typename TSparseImageType >

ScalarValueType itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::m_MinVectorNorm

private

The minimum vector norm parameter.

Definition at line 166 of file itkLevelSetFunctionWithRefitTerm.h.

◆ m_NumVertex

template<typename TImageType , typename TSparseImageType >

const NeighborhoodSizeValueType itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::m_NumVertex

staticprivate

Constants used in computations.

Definition at line 169 of file itkLevelSetFunctionWithRefitTerm.h.

◆ m_OtherPropagationWeight

template<typename TImageType , typename TSparseImageType >

ScalarValueType itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::m_OtherPropagationWeight

protected

The weight for other scalar propagation terms that can be defined by classes derived from this class.

Definition at line 135 of file itkLevelSetFunctionWithRefitTerm.h.

◆ m_RefitWeight

template<typename TImageType , typename TSparseImageType >

ScalarValueType itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::m_RefitWeight

protected

The weight for the refitting term.

Definition at line 131 of file itkLevelSetFunctionWithRefitTerm.h.

◆ m_SparseTargetImage

template<typename TImageType , typename TSparseImageType >

SparseImageType::Pointer itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >::m_SparseTargetImage

private

The sparse image that contains the target curvature information.

Definition at line 163 of file itkLevelSetFunctionWithRefitTerm.h.

The documentation for this class was generated from the following file:

itkLevelSetFunctionWithRefitTerm.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Protected Attributes

Private Attributes

Static Private Attributes

Additional Inherited Members

Detailed Description

template<typename TImageType, typename TSparseImageType> class itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >

Member Typedef Documentation

◆ ConstPointer

◆ FloatOffsetType

◆ GlobalDataStruct

◆ ImageType

◆ IndexType

◆ NeighborhoodScalesType

◆ NeighborhoodSizeValueType

◆ NeighborhoodType

◆ NodeType

◆ NormalVectorType

◆ Pointer

◆ ScalarValueType

◆ Self

◆ SparseImageType

◆ Superclass

◆ TimeStepType

Constructor & Destructor Documentation

◆ LevelSetFunctionWithRefitTerm()

Member Function Documentation

◆ ComputeCurvature()

◆ ComputeGlobalTimeStep()

◆ CreateAnother()

◆ GetNameOfClass()

◆ GetSparseTargetImage()

◆ New()

◆ OtherPropagationSpeed()

◆ PrintSelf()

◆ PropagationSpeed()

◆ SetOtherPropagationWeight()

◆ SetRefitWeight()

◆ SetSparseTargetImage()

Member Data Documentation

◆ m_DimConst

◆ m_MinVectorNorm

◆ m_NumVertex

◆ m_OtherPropagationWeight

◆ m_RefitWeight

◆ m_SparseTargetImage

template<typename TImageType, typename TSparseImageType>
class itk::LevelSetFunctionWithRefitTerm< TImageType, TSparseImageType >