itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType > Class Template Reference

#include <itkVectorThresholdSegmentationLevelSetImageFilter.h>

Inheritance diagram for itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >:

Collaboration diagram for itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >:

Public Types
using	ConstPointer = SmartPointer< const Self >
using	CovarianceMatrixType = typename ThresholdFunctionType::CovarianceMatrixType
using	FeatureImageType = typename Superclass::FeatureImageType
using	MeanVectorType = typename ThresholdFunctionType::MeanVectorType
using	OutputImageType = typename Superclass::OutputImageType
using	Pointer = SmartPointer< Self >
using	ScalarValueType = typename ThresholdFunctionType::ScalarValueType
using	Self = VectorThresholdSegmentationLevelSetImageFilter
using	Superclass = SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >
using	ThresholdFunctionPointer = typename ThresholdFunctionType::Pointer
using	ThresholdFunctionType = VectorThresholdSegmentationLevelSetFunction< OutputImageType, FeatureImageType >
using	ValueType = typename Superclass::ValueType
Public Types inherited from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >
using	ConstPointer = SmartPointer< const Self >
using	FeatureImageType = TFeatureImage
using	IndexType = typename Superclass::IndexType
using	InputImageType = typename Superclass::InputImageType
using	OutputImageType = Image< TOutputPixelType, Self::InputImageDimension >
using	Pointer = SmartPointer< Self >
using	SegmentationFunctionType = SegmentationLevelSetFunction< OutputImageType, FeatureImageType >
using	Self = SegmentationLevelSetImageFilter
using	SpeedImageType = typename SegmentationFunctionType::ImageType
using	Superclass = SparseFieldLevelSetImageFilter< TInputImage, OutputImageType >
using	TimeStepType = typename Superclass::TimeStepType
using	ValueType = typename Superclass::ValueType
using	VectorImageType = typename SegmentationFunctionType::VectorImageType
Public Types inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
using	ConstPointer = SmartPointer< const Self >
using	IndexType = typename OutputImageType::IndexType
using	InputImageType = TInputImage
using	LayerListType = std::vector< LayerPointerType >
using	LayerNodeStorageType = ObjectStore< LayerNodeType >
using	LayerNodeType = SparseFieldLevelSetNode< IndexType >
using	LayerPointerType = typename LayerType::Pointer
using	LayerType = SparseFieldLayer< LayerNodeType >
using	NeighborhoodScalesType = typename Superclass::NeighborhoodScalesType
using	OutputImageType = Image< TOutputPixelType, TInputImage::ImageDimension >
using	Pointer = SmartPointer< Self >
using	RadiusType = typename Superclass::RadiusType
using	Self = SparseFieldLevelSetImageFilter
using	StatusImageType = Image< StatusType, Self::ImageDimension >
using	StatusType = signed char
using	Superclass = FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
using	TimeStepType = typename Superclass::TimeStepType
using	UpdateBufferType = std::vector< ValueType >
using	ValueType = typename OutputImageType::ValueType
Public Types inherited from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
using	ConstPointer = SmartPointer< const Self >
using	FiniteDifferenceFunctionType = FiniteDifferenceFunction< Image< TOutputPixelType, TInputImage::ImageDimension > >
using	InputImageType = TInputImage
using	InputPixelType = typename TInputImage::PixelType
using	InputPixelValueType = typename NumericTraits< InputPixelType >::ValueType
using	NeighborhoodScalesType = typename FiniteDifferenceFunctionType::NeighborhoodScalesType
using	OutputImageType = Image< TOutputPixelType, TInputImage::ImageDimension >
using	OutputPixelType = typename Image< TOutputPixelType, TInputImage::ImageDimension > ::PixelType
using	OutputPixelValueType = typename NumericTraits< OutputPixelType >::ValueType
using	PixelType = OutputPixelType
using	Pointer = SmartPointer< Self >
using	RadiusType = typename FiniteDifferenceFunctionType::RadiusType
using	Self = FiniteDifferenceImageFilter
using	Superclass = InPlaceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
using	TimeStepType = typename FiniteDifferenceFunctionType::TimeStepType
Public Types inherited from itk::InPlaceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
using	ConstPointer = SmartPointer< const Self >
using	InputImageConstPointer = typename InputImageType::ConstPointer
using	InputImagePixelType = typename InputImageType::PixelType
using	InputImagePointer = typename InputImageType::Pointer
using	InputImageRegionType = typename InputImageType::RegionType
using	InputImageType = TInputImage
using	OutputImagePixelType = typename Superclass::OutputImagePixelType
using	OutputImagePointer = typename Superclass::OutputImagePointer
using	OutputImageRegionType = typename Superclass::OutputImageRegionType
using	OutputImageType = typename Superclass::OutputImageType
using	Pointer = SmartPointer< Self >
using	Self = InPlaceImageFilter
using	Superclass = ImageToImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
Public Types inherited from itk::ImageToImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
using	ConstPointer = SmartPointer< const Self >
using	InputImageConstPointer = typename InputImageType::ConstPointer
using	InputImagePixelType = typename InputImageType::PixelType
using	InputImagePointer = typename InputImageType::Pointer
using	InputImageRegionType = typename InputImageType::RegionType
using	InputImageType = TInputImage
using	OutputImagePixelType = typename Superclass::OutputImagePixelType
using	OutputImageRegionType = typename Superclass::OutputImageRegionType
using	Pointer = SmartPointer< Self >
using	Self = ImageToImageFilter
using	Superclass = ImageSource< Image< TOutputPixelType, TInputImage::ImageDimension > >
Public Types inherited from itk::ImageSource< Image< TOutputPixelType, TInputImage::ImageDimension > >
using	ConstPointer = SmartPointer< const Self >
using	DataObjectIdentifierType = Superclass::DataObjectIdentifierType
using	DataObjectPointer = DataObject::Pointer
using	DataObjectPointerArraySizeType = Superclass::DataObjectPointerArraySizeType
using	OutputImagePixelType = typename OutputImageType::PixelType
using	OutputImagePointer = typename OutputImageType::Pointer
using	OutputImageRegionType = typename OutputImageType::RegionType
using	OutputImageType = Image< TOutputPixelType, TInputImage::ImageDimension >
using	Pointer = SmartPointer< Self >
using	Self = ImageSource
using	Superclass = ProcessObject
Public Types inherited from itk::ProcessObject
using	ConstPointer = SmartPointer< const Self >
using	DataObjectIdentifierType = DataObject::DataObjectIdentifierType
using	DataObjectPointer = DataObject::Pointer
using	DataObjectPointerArray = std::vector< DataObjectPointer >
using	DataObjectPointerArraySizeType = DataObjectPointerArray::size_type
using	MultiThreaderType = MultiThreaderBase
using	NameArray = std::vector< DataObjectIdentifierType >
using	Pointer = SmartPointer< Self >
using	Self = ProcessObject
using	Superclass = Object
Public Types inherited from itk::Object
using	ConstPointer = SmartPointer< const Self >
using	Pointer = SmartPointer< Self >
using	Self = Object
using	Superclass = LightObject
Public Types inherited from itk::LightObject
using	ConstPointer = SmartPointer< const Self >
using	Pointer = SmartPointer< Self >
using	Self = LightObject

Public Member Functions
virtual ::itk::LightObject::Pointer	CreateAnother () const
virtual const char *	GetNameOfClass () const
Public Member Functions inherited from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >
void	SetMaximumIterations (unsigned int i)
unsigned int	GetMaximumIterations ()
virtual void	SetFeatureImage (const FeatureImageType *f)
virtual const FeatureImageType *	GetFeatureImage () const
virtual void	SetInitialImage (const InputImageType *input)
virtual const InputImageType *	GetInitialImage () const
void	SetInput2 (const FeatureImageType *input)
void	SetSpeedImage (SpeedImageType *s)
void	SetAdvectionImage (VectorImageType *v)
virtual const SpeedImageType *	GetSpeedImage () const
virtual const VectorImageType *	GetAdvectionImage () const
void	SetUseNegativeFeaturesOn ()
void	SetUseNegativeFeaturesOff ()
void	SetUseNegativeFeatures (bool u)
bool	GetUseNegativeFeatures () const
virtual void	SetReverseExpansionDirection (bool _arg)
virtual bool	GetReverseExpansionDirection () const
virtual void	ReverseExpansionDirectionOn ()
virtual void	ReverseExpansionDirectionOff ()
virtual void	SetAutoGenerateSpeedAdvection (bool _arg)
virtual bool	GetAutoGenerateSpeedAdvection () const
virtual void	AutoGenerateSpeedAdvectionOn ()
virtual void	AutoGenerateSpeedAdvectionOff ()
void	SetFeatureScaling (ValueType v)
void	SetPropagationScaling (ValueType v)
ValueType	GetPropagationScaling () const
void	SetAdvectionScaling (ValueType v)
ValueType	GetAdvectionScaling () const
void	SetCurvatureScaling (ValueType v)
ValueType	GetCurvatureScaling () const
void	SetUseMinimalCurvature (bool b)
bool	GetUseMinimalCurvature () const
void	UseMinimalCurvatureOn ()
void	UseMinimalCurvatureOff ()
virtual void	SetSegmentationFunction (SegmentationFunctionType *s)
virtual SegmentationFunctionType *	GetSegmentationFunction ()
void	SetMaximumCurvatureTimeStep (double n)
double	GetMaximumCurvatureTimeStep () const
void	SetMaximumPropagationTimeStep (double n)
double	GetMaximumPropagationTimeStep () const
void	GenerateSpeedImage ()
void	GenerateAdvectionImage ()
Public Member Functions inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
virtual ::itk::LightObject::Pointer	CreateAnother () const
virtual void	SetNumberOfLayers (unsigned int _arg)
virtual unsigned int	GetNumberOfLayers () const
virtual void	SetIsoSurfaceValue (ValueType _arg)
virtual ValueType	GetIsoSurfaceValue () const
virtual void	SetInterpolateSurfaceLocation (bool _arg)
virtual bool	GetInterpolateSurfaceLocation () const
void	InterpolateSurfaceLocationOn ()
void	InterpolateSurfaceLocationOff ()
Public Member Functions inherited from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
virtual const FiniteDifferenceFunctionType ::Pointer &	GetDifferenceFunction () const
virtual const IdentifierType &	GetElapsedIterations () const
virtual void	SetDifferenceFunction (FiniteDifferenceFunctionType *_arg)
virtual void	SetNumberOfIterations (IdentifierType _arg)
virtual const IdentifierType &	GetNumberOfIterations () const
virtual void	SetUseImageSpacing (bool _arg)
virtual void	UseImageSpacingOn ()
virtual void	UseImageSpacingOff ()
virtual const bool &	GetUseImageSpacing () const
virtual void	SetMaximumRMSError (double _arg)
virtual const double &	GetMaximumRMSError () const
virtual void	SetRMSChange (double _arg)
virtual const double &	GetRMSChange () const
virtual void	SetManualReinitialization (bool _arg)
virtual const bool &	GetManualReinitialization () const
virtual void	ManualReinitializationOn ()
virtual void	ManualReinitializationOff ()
virtual void	SetIsInitialized (bool _arg)
virtual bool	GetIsInitialized ()
void	SetStateToUninitialized ()
void	SetStateToInitialized ()
Public Member Functions inherited from itk::InPlaceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
virtual void	SetInPlace (bool _arg)
virtual bool	GetInPlace () const
virtual void	InPlaceOn ()
virtual void	InPlaceOff ()
virtual bool	CanRunInPlace () const
Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
const InputImageType *	GetInput () const
const InputImageType *	GetInput (unsigned int idx) const
void	PopBackInput () override
void	PopFrontInput () override
virtual void	PushBackInput (const InputImageType *input)
virtual void	PushFrontInput (const InputImageType *input)
virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void	SetInput (const InputImageType *input)
virtual void	SetInput (unsigned int, const TInputImage *image)
virtual void	SetCoordinateTolerance (double _arg)
virtual double	GetCoordinateTolerance () const
virtual void	SetDirectionTolerance (double _arg)
virtual double	GetDirectionTolerance () const
Public Member Functions inherited from itk::ImageSource< Image< TOutputPixelType, TInputImage::ImageDimension > >
OutputImageType *	GetOutput ()
const OutputImageType *	GetOutput () const
OutputImageType *	GetOutput (unsigned int idx)
virtual void	GraftOutput (DataObject *graft)
virtual void	GraftOutput (const DataObjectIdentifierType &key, DataObject *graft)
virtual void	GraftNthOutput (unsigned int idx, DataObject *graft)
ProcessObject::DataObjectPointer	MakeOutput (ProcessObject::DataObjectPointerArraySizeType idx) override
ProcessObject::DataObjectPointer	MakeOutput (const ProcessObject::DataObjectIdentifierType &) override
Public Member Functions inherited from itk::ProcessObject
virtual void	AbortGenerateDataOff ()
virtual void	AbortGenerateDataOn ()
virtual void	EnlargeOutputRequestedRegion (DataObject *)
virtual const bool &	GetAbortGenerateData () const
DataObjectPointerArray	GetIndexedInputs ()
DataObjectPointerArray	GetIndexedOutputs ()
NameArray	GetInputNames () const
DataObjectPointerArray	GetInputs ()
DataObjectPointerArraySizeType	GetNumberOfIndexedInputs () const
DataObjectPointerArraySizeType	GetNumberOfIndexedOutputs () const
DataObjectPointerArraySizeType	GetNumberOfInputs () const
DataObjectPointerArraySizeType	GetNumberOfOutputs () const
virtual DataObjectPointerArraySizeType	GetNumberOfValidRequiredInputs () const
NameArray	GetOutputNames () const
DataObjectPointerArray	GetOutputs ()
virtual float	GetProgress () const
NameArray	GetRequiredInputNames () const
bool	HasInput (const DataObjectIdentifierType &key) const
bool	HasOutput (const DataObjectIdentifierType &key) const
void	IncrementProgress (float increment)
virtual void	PropagateRequestedRegion (DataObject *output)
virtual void	ResetPipeline ()
virtual void	SetAbortGenerateData (bool _arg)
virtual void	Update ()
virtual void	UpdateLargestPossibleRegion ()
virtual void	UpdateOutputData (DataObject *output)
virtual void	UpdateOutputInformation ()
void	UpdateProgress (float progress)
virtual void	SetReleaseDataFlag (bool val)
virtual bool	GetReleaseDataFlag () const
void	ReleaseDataFlagOn ()
void	ReleaseDataFlagOff ()
virtual void	SetReleaseDataBeforeUpdateFlag (bool _arg)
virtual const bool &	GetReleaseDataBeforeUpdateFlag () const
virtual void	ReleaseDataBeforeUpdateFlagOn ()
virtual void	ReleaseDataBeforeUpdateFlagOff ()
virtual void	SetNumberOfWorkUnits (ThreadIdType _arg)
virtual const ThreadIdType &	GetNumberOfWorkUnits () const
MultiThreaderType *	GetMultiThreader () const
void	SetMultiThreader (MultiThreaderType *threader)
virtual void	PrepareOutputs ()
Public Member Functions inherited from itk::Object
unsigned long	AddObserver (const EventObject &event, Command *)
unsigned long	AddObserver (const EventObject &event, Command *) const
unsigned long	AddObserver (const EventObject &event, std::function< void(const EventObject &)> function) const
virtual void	DebugOff () const
virtual void	DebugOn () const
Command *	GetCommand (unsigned long tag)
bool	GetDebug () const
MetaDataDictionary &	GetMetaDataDictionary ()
const MetaDataDictionary &	GetMetaDataDictionary () const
virtual ModifiedTimeType	GetMTime () const
virtual const TimeStamp &	GetTimeStamp () const
bool	HasObserver (const EventObject &event) const
void	InvokeEvent (const EventObject &)
void	InvokeEvent (const EventObject &) const
virtual void	Modified () const
void	Register () const override
void	RemoveAllObservers ()
void	RemoveObserver (unsigned long tag)
void	SetDebug (bool debugFlag) const
void	SetReferenceCount (int) override
void	UnRegister () const noexcept override
void	SetMetaDataDictionary (const MetaDataDictionary &rhs)
void	SetMetaDataDictionary (MetaDataDictionary &&rrhs)
virtual void	SetObjectName (std::string _arg)
virtual const std::string &	GetObjectName () const
Public Member Functions inherited from itk::LightObject
Pointer	Clone () const
virtual void	Delete ()
virtual int	GetReferenceCount () const
void	Print (std::ostream &os, Indent indent=0) const

Static Public Member Functions
static Pointer	New ()
Static Public Member Functions inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
static Pointer	New ()
Static Public Member Functions inherited from itk::ImageToImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
static void	SetGlobalDefaultDirectionTolerance (double)
static double	GetGlobalDefaultDirectionTolerance ()
static void	SetGlobalDefaultCoordinateTolerance (double)
static double	GetGlobalDefaultCoordinateTolerance ()
Static Public Member Functions inherited from itk::Object
static bool	GetGlobalWarningDisplay ()
static void	GlobalWarningDisplayOff ()
static void	GlobalWarningDisplayOn ()
static Pointer	New ()
static void	SetGlobalWarningDisplay (bool val)
Static Public Member Functions inherited from itk::LightObject
static void	BreakOnError ()
static Pointer	New ()
ThresholdFunctionPointer	m_ThresholdFunction
void	SetMean (const MeanVectorType &mean)
const MeanVectorType &	GetMean () const
void	SetCovariance (const CovarianceMatrixType &cov)
const CovarianceMatrixType &	GetCovariance () const
void	SetThreshold (ScalarValueType thr)
ScalarValueType	GetThreshold ()
	~VectorThresholdSegmentationLevelSetImageFilter () override=default
	VectorThresholdSegmentationLevelSetImageFilter ()
void	PrintSelf (std::ostream &os, Indent indent) const override

Additional Inherited Members
Static Public Attributes inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
static constexpr unsigned int	ImageDimension
Static Public Attributes inherited from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
static constexpr unsigned int	ImageDimension
Static Public Attributes inherited from itk::InPlaceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
static constexpr unsigned int	InputImageDimension
static constexpr unsigned int	OutputImageDimension
Static Public Attributes inherited from itk::ImageToImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
static constexpr unsigned int	InputImageDimension
static constexpr unsigned int	OutputImageDimension
Static Public Attributes inherited from itk::ImageSource< Image< TOutputPixelType, TInputImage::ImageDimension > >
static constexpr unsigned int	OutputImageDimension
Protected Types inherited from itk::ImageToImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
using	InputToOutputRegionCopierType = ImageToImageFilterDetail::ImageRegionCopier< Self::OutputImageDimension, Self::InputImageDimension >
using	OutputToInputRegionCopierType = ImageToImageFilterDetail::ImageRegionCopier< Self::InputImageDimension, Self::OutputImageDimension >
Protected Member Functions inherited from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >
	~SegmentationLevelSetImageFilter () override=default
	SegmentationLevelSetImageFilter ()
void	InitializeIteration () override
void	GenerateData () override
Protected Member Functions inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
	SparseFieldLevelSetImageFilter ()
	~SparseFieldLevelSetImageFilter () override=default
void	PrintSelf (std::ostream &os, Indent indent) const override
virtual ValueType	CalculateUpdateValue (const IndexType &, const TimeStepType &dt, const ValueType &value, const ValueType &change)
void	PostProcessOutput () override
virtual void	InitializeBackgroundPixels ()
void	Initialize () override
void	CopyInputToOutput () override
void	AllocateUpdateBuffer () override
void	ApplyUpdate (const TimeStepType &dt) override
TimeStepType	CalculateChange () override
void	ConstructLayer (StatusType from, StatusType to)
void	ConstructActiveLayer ()
void	InitializeActiveLayerValues ()
void	PropagateLayerValues (StatusType from, StatusType to, StatusType promote, int InOrOut)
void	PropagateAllLayerValues ()
void	UpdateActiveLayerValues (TimeStepType dt, LayerType *UpList, LayerType *DownList)
void	ProcessStatusList (LayerType *InputList, LayerType *OutputList, StatusType ChangeToStatus, StatusType SearchForStatus)
void	ProcessOutsideList (LayerType *OutsideList, StatusType ChangeToStatus)
virtual ValueType	GetValueZero () const
virtual ValueType	GetValueOne () const
Protected Member Functions inherited from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
	FiniteDifferenceImageFilter ()
	~FiniteDifferenceImageFilter () override=default
void	GenerateData () override
void	GenerateInputRequestedRegion () override
virtual bool	Halt ()
virtual bool	ThreadedHalt (void *)
virtual TimeStepType	ResolveTimeStep (const std::vector< TimeStepType > &timeStepList, const std::vector< bool > &valid) const
virtual void	SetElapsedIterations (IdentifierType _arg)
Protected Member Functions inherited from itk::InPlaceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
	InPlaceImageFilter ()=default
	~InPlaceImageFilter () override=default
void	AllocateOutputs () override
void	ReleaseInputs () override
virtual bool	GetRunningInPlace () const
Protected Member Functions inherited from itk::ImageToImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
void	PushBackInput (const DataObject *input) override
void	PushFrontInput (const DataObject *input) override
	ImageToImageFilter ()
	~ImageToImageFilter () override=default
void	VerifyInputInformation () ITKv5_CONST override
virtual void	CallCopyOutputRegionToInputRegion (InputImageRegionType &destRegion, const OutputImageRegionType &srcRegion)
virtual void	CallCopyInputRegionToOutputRegion (OutputImageRegionType &destRegion, const InputImageRegionType &srcRegion)
Protected Member Functions inherited from itk::ImageSource< Image< TOutputPixelType, TInputImage::ImageDimension > >
	ImageSource ()
	~ImageSource () override=default
void	ClassicMultiThread (ThreadFunctionType callbackFunction)
virtual void	ThreadedGenerateData (const OutputImageRegionType &region, ThreadIdType threadId)
virtual void	DynamicThreadedGenerateData (const OutputImageRegionType &outputRegionForThread)
virtual void	BeforeThreadedGenerateData ()
virtual void	AfterThreadedGenerateData ()
virtual const ImageRegionSplitterBase *	GetImageRegionSplitter () const
virtual unsigned int	SplitRequestedRegion (unsigned int i, unsigned int pieces, OutputImageRegionType &splitRegion)
virtual bool	GetDynamicMultiThreading () const
virtual void	SetDynamicMultiThreading (bool _arg)
virtual void	DynamicMultiThreadingOn ()
virtual void	DynamicMultiThreadingOff ()
Protected Member Functions inherited from itk::ProcessObject
	ProcessObject ()
	~ProcessObject () override
DataObject *	GetInput (const DataObjectIdentifierType &key)
const DataObject *	GetInput (const DataObjectIdentifierType &key) const
DataObject *	GetInput (DataObjectPointerArraySizeType idx)
const DataObject *	GetInput (DataObjectPointerArraySizeType idx) const
virtual void	SetInput (const DataObjectIdentifierType &key, DataObject *input)
virtual void	SetNthInput (DataObjectPointerArraySizeType idx, DataObject *input)
virtual void	AddInput (DataObject *input)
virtual void	RemoveInput (const DataObjectIdentifierType &key)
virtual void	RemoveInput (DataObjectPointerArraySizeType)
DataObject *	GetPrimaryInput ()
const DataObject *	GetPrimaryInput () const
virtual void	SetPrimaryInputName (const DataObjectIdentifierType &key)
virtual const char *	GetPrimaryInputName () const
virtual void	SetPrimaryInput (DataObject *object)
void	SetNumberOfIndexedInputs (DataObjectPointerArraySizeType num)
virtual void	SetNumberOfRequiredInputs (DataObjectPointerArraySizeType)
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredInputs () const
bool	RemoveRequiredInputName (const DataObjectIdentifierType &)
bool	IsRequiredInputName (const DataObjectIdentifierType &) const
void	SetRequiredInputNames (const NameArray &)
bool	AddRequiredInputName (const DataObjectIdentifierType &)
bool	AddRequiredInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
void	AddOptionalInputName (const DataObjectIdentifierType &)
void	AddOptionalInputName (const DataObjectIdentifierType &, DataObjectPointerArraySizeType idx)
DataObject *	GetOutput (const DataObjectIdentifierType &key)
const DataObject *	GetOutput (const DataObjectIdentifierType &key) const
virtual void	SetPrimaryOutputName (const DataObjectIdentifierType &key)
virtual const char *	GetPrimaryOutputName () const
DataObject *	GetOutput (DataObjectPointerArraySizeType i)
const DataObject *	GetOutput (DataObjectPointerArraySizeType i) const
virtual void	SetOutput (const DataObjectIdentifierType &name, DataObject *output)
virtual void	RemoveOutput (const DataObjectIdentifierType &key)
DataObject *	GetPrimaryOutput ()
const DataObject *	GetPrimaryOutput () const
virtual void	SetPrimaryOutput (DataObject *object)
virtual void	SetNthOutput (DataObjectPointerArraySizeType idx, DataObject *output)
virtual void	AddOutput (DataObject *output)
virtual void	RemoveOutput (DataObjectPointerArraySizeType idx)
virtual void	SetNumberOfRequiredOutputs (DataObjectPointerArraySizeType _arg)
virtual const DataObjectPointerArraySizeType &	GetNumberOfRequiredOutputs () const
void	SetNumberOfIndexedOutputs (DataObjectPointerArraySizeType num)
DataObjectIdentifierType	MakeNameFromInputIndex (DataObjectPointerArraySizeType idx) const
DataObjectIdentifierType	MakeNameFromOutputIndex (DataObjectPointerArraySizeType idx) const
DataObjectPointerArraySizeType	MakeIndexFromInputName (const DataObjectIdentifierType &name) const
DataObjectPointerArraySizeType	MakeIndexFromOutputName (const DataObjectIdentifierType &name) const
bool	IsIndexedInputName (const DataObjectIdentifierType &) const
bool	IsIndexedOutputName (const DataObjectIdentifierType &) const
virtual void	VerifyPreconditions () ITKv5_CONST
virtual void	GenerateOutputRequestedRegion (DataObject *output)
virtual void	GenerateOutputInformation ()
virtual void	PropagateResetPipeline ()
virtual void	CacheInputReleaseDataFlags ()
virtual void	RestoreInputReleaseDataFlags ()
virtual bool	GetThreaderUpdateProgress () const
virtual void	ThreaderUpdateProgressOn ()
virtual void	ThreaderUpdateProgressOff ()
virtual void	SetThreaderUpdateProgress (bool arg)
Protected Member Functions inherited from itk::Object
	Object ()
	~Object () override
bool	PrintObservers (std::ostream &os, Indent indent) const
virtual void	SetTimeStamp (const TimeStamp &timeStamp)
Protected Member Functions inherited from itk::LightObject
virtual LightObject::Pointer	InternalClone () const
	LightObject ()
virtual void	PrintHeader (std::ostream &os, Indent indent) const
virtual void	PrintTrailer (std::ostream &os, Indent indent) const
virtual	~LightObject ()
Static Protected Member Functions inherited from itk::ImageSource< Image< TOutputPixelType, TInputImage::ImageDimension > >
static const ImageRegionSplitterBase *	GetGlobalDefaultSplitter ()
static ITK_THREAD_RETURN_FUNCTION_CALL_CONVENTION	ThreaderCallback (void *arg)
Static Protected Member Functions inherited from itk::ProcessObject
static constexpr float	progressFixedToFloat (uint32_t fixed)
static uint32_t	progressFloatToFixed (float f)
Protected Attributes inherited from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >
bool	m_ReverseExpansionDirection
bool	m_AutoGenerateSpeedAdvection
Protected Attributes inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
SparseFieldCityBlockNeighborList< NeighborhoodIterator< OutputImageType > >	m_NeighborList
double	m_ConstantGradientValue
OutputImageType::Pointer	m_ShiftedImage
LayerListType	m_Layers
unsigned int	m_NumberOfLayers
StatusImageType::Pointer	m_StatusImage
LayerNodeStorageType::Pointer	m_LayerNodeStore
ValueType	m_IsoSurfaceValue
UpdateBufferType	m_UpdateBuffer
bool	m_InterpolateSurfaceLocation
const InputImageType *	m_InputImage
OutputImageType *	m_OutputImage
Protected Attributes inherited from itk::FiniteDifferenceImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
bool	m_IsInitialized
IdentifierType	m_NumberOfIterations
IdentifierType	m_ElapsedIterations
bool	m_ManualReinitialization
double	m_RMSChange
double	m_MaximumRMSError
Protected Attributes inherited from itk::ImageSource< Image< TOutputPixelType, TInputImage::ImageDimension > >
bool	m_DynamicMultiThreading
Protected Attributes inherited from itk::ProcessObject
bool	m_Updating
TimeStamp	m_OutputInformationMTime
Protected Attributes inherited from itk::LightObject
std::atomic< int >	m_ReferenceCount
Static Protected Attributes inherited from itk::SparseFieldLevelSetImageFilter< TInputImage, Image< TOutputPixelType, TInputImage::ImageDimension > >
static ValueType	m_ValueOne
static ValueType	m_ValueZero
static StatusType	m_StatusChanging
static StatusType	m_StatusActiveChangingUp
static StatusType	m_StatusActiveChangingDown
static StatusType	m_StatusBoundaryPixel
static StatusType	m_StatusNull

Detailed Description

template<typename TInputImage, typename TFeatureImage, typename TOutputPixelType = float>
class itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >

Segments structures in images based on intensity values.

IMPORTANT

The SegmentationLevelSetImageFilter class and the VectorThresholdSegmentationLevelSetFunction class contain additional information necessary to the full understanding of how to use this filter.

CREDITS

This class was contributed to ITK by Stefan Lindenau https://www.itk.org/pipermail/insight-users/2003-December/005969.html

OVERVIEW

This class is a level set method segmentation filter. It constructs a speed function which is close to zero where the Mahalabonian Distance exceeds a certain threshold, effectively locking the propagating front onto those edges. Elsewhere, the front will propagate quickly.

INPUTS

This filter requires two inputs. The first input is a seed image. This seed image must contain an isosurface that you want to use as the seed for your segmentation. It can be a binary, graylevel, or floating point image. The only requirement is that it contain a closed isosurface that you will identify as the seed by setting the IsosurfaceValue parameter of the filter. For a binary image you will want to set your isosurface value halfway between your on and off values (i.e. for 0's and 1's, use an isosurface value of 0.5).

The second input is the feature image. This is the image from which the speed function will be calculated the feature image has to be a Vector Image. For most applications, this is the image that you want to segment. The desired isosurface in your seed image should lie within the region of your feature image that you are trying to segment. Note that this filter does no preprocessing of the feature image before thresholding.

See SegmentationLevelSetImageFilter for more information on Inputs.

OUTPUTS

The filter outputs a single, scalar, real-valued image. Positive values in the output image are inside the segmented region and negative values in the image are outside of the inside region. The zero crossings of the image correspond to the position of the level set front.

See SparseFieldLevelSetImageFilter and SegmentationLevelSetImageFilter for more information.

PARAMETERS

In addition to parameters described in SegmentationLevelSetImageFilter, this filter adds the Threshold, the Mean and the Covariance. See VectorThresholdSegmentationLevelSetFunction for a description of how this value affect the segmentation.

See also

SegmentationLevelSetImageFilter

ThresholdSegmentationLevelSetFunction,

SparseFieldLevelSetImageFilter

Definition at line 89 of file itkVectorThresholdSegmentationLevelSetImageFilter.h.

Member Typedef Documentation

ConstPointer

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

using itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ConstPointer = SmartPointer<const Self>

Definition at line 99 of file itkVectorThresholdSegmentationLevelSetImageFilter.h.

CovarianceMatrixType

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

using itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::CovarianceMatrixType = typename ThresholdFunctionType::CovarianceMatrixType

Definition at line 110 of file itkVectorThresholdSegmentationLevelSetImageFilter.h.

FeatureImageType

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

using itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::FeatureImageType = typename Superclass::FeatureImageType

Definition at line 104 of file itkVectorThresholdSegmentationLevelSetImageFilter.h.

MeanVectorType

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

using itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::MeanVectorType = typename ThresholdFunctionType::MeanVectorType

Definition at line 109 of file itkVectorThresholdSegmentationLevelSetImageFilter.h.

OutputImageType

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

using itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::OutputImageType = typename Superclass::OutputImageType

Definition at line 103 of file itkVectorThresholdSegmentationLevelSetImageFilter.h.

Pointer

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

using itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::Pointer = SmartPointer<Self>

Definition at line 98 of file itkVectorThresholdSegmentationLevelSetImageFilter.h.

ScalarValueType

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

using itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ScalarValueType = typename ThresholdFunctionType::ScalarValueType

Definition at line 111 of file itkVectorThresholdSegmentationLevelSetImageFilter.h.

Self

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

using itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::Self = VectorThresholdSegmentationLevelSetImageFilter

Standard class type aliases

Definition at line 96 of file itkVectorThresholdSegmentationLevelSetImageFilter.h.

Superclass

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

using itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::Superclass = SegmentationLevelSetImageFilter<TInputImage, TFeatureImage, TOutputPixelType>

Definition at line 97 of file itkVectorThresholdSegmentationLevelSetImageFilter.h.

ThresholdFunctionPointer

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

using itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ThresholdFunctionPointer = typename ThresholdFunctionType::Pointer

Definition at line 108 of file itkVectorThresholdSegmentationLevelSetImageFilter.h.

ThresholdFunctionType

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

using itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ThresholdFunctionType = VectorThresholdSegmentationLevelSetFunction<OutputImageType, FeatureImageType>

Type of the segmentation function

Definition at line 107 of file itkVectorThresholdSegmentationLevelSetImageFilter.h.

ValueType

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

using itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::ValueType = typename Superclass::ValueType

Inherited type alias from the superclass.

Definition at line 102 of file itkVectorThresholdSegmentationLevelSetImageFilter.h.

Constructor & Destructor Documentation

~VectorThresholdSegmentationLevelSetImageFilter()

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::~VectorThresholdSegmentationLevelSetImageFilter ( )

overrideprotecteddefault

Set/Get mean and covariance that will be used to calculate the speed function

VectorThresholdSegmentationLevelSetImageFilter()

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::VectorThresholdSegmentationLevelSetImageFilter ( )

protected

Set/Get mean and covariance that will be used to calculate the speed function

Member Function Documentation

CreateAnother()

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual::itk::LightObject::Pointer itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::CreateAnother ( ) const

virtual

Create an object from an instance, potentially deferring to a factory. This method allows you to create an instance of an object that is exactly the same type as the referring object. This is useful in cases where an object has been cast back to a base class.

Reimplemented from itk::Object.

GetCovariance()

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

const CovarianceMatrixType& itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetCovariance ( ) const

inline

Set/Get mean and covariance that will be used to calculate the speed function

Definition at line 143 of file itkVectorThresholdSegmentationLevelSetImageFilter.h.

GetMean()

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

const MeanVectorType& itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetMean ( ) const

inline

Set/Get mean and covariance that will be used to calculate the speed function

Definition at line 130 of file itkVectorThresholdSegmentationLevelSetImageFilter.h.

GetNameOfClass()

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

virtual const char* itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetNameOfClass ( ) const

virtual

Run-time type information (and related methods).

Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

GetThreshold()

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

ScalarValueType itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::GetThreshold ( )

inline

Set/Get mean and covariance that will be used to calculate the speed function

Definition at line 158 of file itkVectorThresholdSegmentationLevelSetImageFilter.h.

New()

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

static Pointer itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::New ( )

static

Method for creation through the object factory

PrintSelf()

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::PrintSelf ( std::ostream &  os, Indent  indent  ) const

overrideprotectedvirtual

Set/Get mean and covariance that will be used to calculate the speed function

Reimplemented from itk::SegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >.

SetCovariance()

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetCovariance ( const CovarianceMatrixType &  cov )

inline

Set/Get mean and covariance that will be used to calculate the speed function

Definition at line 136 of file itkVectorThresholdSegmentationLevelSetImageFilter.h.

SetMean()

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetMean ( const MeanVectorType &  mean )

inline

Set/Get mean and covariance that will be used to calculate the speed function

Definition at line 122 of file itkVectorThresholdSegmentationLevelSetImageFilter.h.

SetThreshold()

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

void itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::SetThreshold ( ScalarValueType  thr )

inline

Set/Get the threshold for the Mahanalobis Distance

Definition at line 150 of file itkVectorThresholdSegmentationLevelSetImageFilter.h.

Member Data Documentation

m_ThresholdFunction

template<typename TInputImage , typename TFeatureImage , typename TOutputPixelType = float>

ThresholdFunctionPointer itk::VectorThresholdSegmentationLevelSetImageFilter< TInputImage, TFeatureImage, TOutputPixelType >::m_ThresholdFunction

private

Set/Get mean and covariance that will be used to calculate the speed function

Definition at line 171 of file itkVectorThresholdSegmentationLevelSetImageFilter.h.

---

The documentation for this class was generated from the following file:

• itkVectorThresholdSegmentationLevelSetImageFilter.h