itkLevelSetEvolution.h

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 *  Copyright NumFOCUS
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 *  you may not use this file except in compliance with the License.
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#ifndef itkLevelSetEvolution_h
#define itkLevelSetEvolution_h
 
#include "itkLevelSetEvolutionBase.h"
#include "itkLevelSetDenseImage.h"
 
#include "itkWhitakerSparseLevelSetImage.h"
#include "itkUpdateWhitakerSparseLevelSet.h"
 
#include "itkShiSparseLevelSetImage.h"
#include "itkUpdateShiSparseLevelSet.h"
 
#include "itkMalcolmSparseLevelSetImage.h"
#include "itkUpdateMalcolmSparseLevelSet.h"
 
#include "itkLevelSetEvolutionComputeIterationThreader.h"
#include "itkLevelSetEvolutionUpdateLevelSetsThreader.h"
 
namespace itk
{
template <typename TEquationContainer, typename TLevelSet>
class ITK_TEMPLATE_EXPORT LevelSetEvolution
{};
 
template <typename TEquationContainer, typename TImage>
class ITK_TEMPLATE_EXPORT LevelSetEvolution<TEquationContainer, LevelSetDenseImage<TImage>>
  : public LevelSetEvolutionBase<TEquationContainer, LevelSetDenseImage<TImage>>
{
public:
  ITK_DISALLOW_COPY_AND_MOVE(LevelSetEvolution);
 
  using LevelSetType = LevelSetDenseImage<TImage>;
 
  using Self = LevelSetEvolution;
  using Pointer = SmartPointer<Self>;
  using ConstPointer = SmartPointer<const Self>;
  using Superclass = LevelSetEvolutionBase<TEquationContainer, LevelSetType>;
 
  itkNewMacro(Self);
 
  itkTypeMacro(LevelSetEvolution, LevelSetEvolutionBase);
 
  using EquationContainerType = typename Superclass::EquationContainerType;
  using EquationContainerPointer = typename Superclass::EquationContainerPointer;
  using TermContainerType = typename Superclass::TermContainerType;
  using TermContainerPointer = typename Superclass::TermContainerPointer;
 
  using TermType = typename Superclass::TermType;
  using TermPointer = typename Superclass::TermPointer;
 
  using InputImageType = typename Superclass::InputImageType;
  using InputImagePixelType = typename Superclass::InputImagePixelType;
  using InputImageConstPointer = typename Superclass::InputImageConstPointer;
  using InputImageRegionType = typename Superclass::InputImageRegionType;
  using InputPixelRealType = typename Superclass::InputPixelRealType;
 
  static constexpr unsigned int ImageDimension = Superclass::ImageDimension;
 
  using LevelSetContainerType = typename Superclass::LevelSetContainerType;
 
  using LevelSetIdentifierType = typename Superclass::LevelSetIdentifierType;
 
  using LevelSetImageType = typename LevelSetType::ImageType;
 
  using LevelSetOutputType = typename Superclass::LevelSetOutputType;
  using LevelSetOutputRealType = typename Superclass::LevelSetOutputRealType;
  using LevelSetDataType = typename Superclass::LevelSetDataType;
 
  using IdListType = typename Superclass::IdListType;
  using IdListIterator = typename Superclass::IdListIterator;
  using IdListConstIterator = typename Superclass::IdListConstIterator;
  using IdListImageType = typename Superclass::IdListImageType;
  using CacheImageType = typename Superclass::CacheImageType;
  using DomainMapImageFilterType = typename Superclass::DomainMapImageFilterType;
 
  using StoppingCriterionType = typename Superclass::StoppingCriterionType;
  using StoppingCriterionPointer = typename Superclass::StoppingCriterionPointer;
 
  using ThresholdFilterType = BinaryThresholdImageFilter<LevelSetImageType, LevelSetImageType>;
  using ThresholdFilterPointer = typename ThresholdFilterType::Pointer;
 
  using MaurerType = SignedMaurerDistanceMapImageFilter<LevelSetImageType, LevelSetImageType>;
  using MaurerPointer = typename MaurerType::Pointer;
 
  using LevelSetImageIteratorType = ImageRegionIteratorWithIndex<LevelSetImageType>;
 
  using LevelSetImageConstIteratorType = ImageRegionConstIteratorWithIndex<LevelSetImageType>;
 
  using InputImageConstIteratorType = ImageRegionConstIteratorWithIndex<InputImageType>;
 
  void
  SetNumberOfWorkUnits(const ThreadIdType numberOfThreads);
 
  ThreadIdType
  GetNumberOfWorkUnits() const;
 
  ~LevelSetEvolution() override = default;
 
protected:
  LevelSetEvolution();
 
  void
  AllocateUpdateBuffer() override;
 
  void
  ComputeIteration() override;
 
  void
  ComputeTimeStepForNextIteration() override;
 
  void
  UpdateLevelSets() override;
 
  void
  UpdateEquations() override;
 
  void
  ReinitializeToSignedDistance();
 
  typename LevelSetContainerType::Pointer m_UpdateBuffer;
 
  friend class LevelSetEvolutionComputeIterationThreader<LevelSetType,
                                                         ThreadedImageRegionPartitioner<TImage::ImageDimension>,
                                                         Self>;
  using SplitLevelSetComputeIterationThreaderType =
    LevelSetEvolutionComputeIterationThreader<LevelSetType,
                                              ThreadedImageRegionPartitioner<TImage::ImageDimension>,
                                              Self>;
  typename SplitLevelSetComputeIterationThreaderType::Pointer m_SplitLevelSetComputeIterationThreader;
 
  using DomainMapConstIteratorType = typename DomainMapImageFilterType::DomainMapType::const_iterator;
  using ThreadedDomainMapPartitionerType = ThreadedIteratorRangePartitioner<DomainMapConstIteratorType>;
  friend class LevelSetEvolutionComputeIterationThreader<LevelSetType, ThreadedDomainMapPartitionerType, Self>;
  using SplitDomainMapComputeIterationThreaderType =
    LevelSetEvolutionComputeIterationThreader<LevelSetType, ThreadedDomainMapPartitionerType, Self>;
  typename SplitDomainMapComputeIterationThreaderType::Pointer m_SplitDomainMapComputeIterationThreader;
 
  friend class LevelSetEvolutionUpdateLevelSetsThreader<LevelSetType,
                                                        ThreadedImageRegionPartitioner<TImage::ImageDimension>,
                                                        Self>;
  using SplitLevelSetUpdateLevelSetsThreaderType =
    LevelSetEvolutionUpdateLevelSetsThreader<LevelSetType,
                                             ThreadedImageRegionPartitioner<TImage::ImageDimension>,
                                             Self>;
  typename SplitLevelSetUpdateLevelSetsThreaderType::Pointer m_SplitLevelSetUpdateLevelSetsThreader;
 
  const IdListType * m_IdListToProcessWhenThreading;
};
 
 
template <typename TEquationContainer, typename TOutput, unsigned int VDimension>
class ITK_TEMPLATE_EXPORT LevelSetEvolution<TEquationContainer, WhitakerSparseLevelSetImage<TOutput, VDimension>>
  : public LevelSetEvolutionBase<TEquationContainer, WhitakerSparseLevelSetImage<TOutput, VDimension>>
{
public:
  ITK_DISALLOW_COPY_AND_MOVE(LevelSetEvolution);
 
  using LevelSetType = WhitakerSparseLevelSetImage<TOutput, VDimension>;
 
  using Self = LevelSetEvolution;
  using Pointer = SmartPointer<Self>;
  using ConstPointer = SmartPointer<const Self>;
  using Superclass = LevelSetEvolutionBase<TEquationContainer, LevelSetType>;
 
  itkNewMacro(Self);
 
  itkTypeMacro(LevelSetEvolution, LevelSetEvolutionBase);
 
  using EquationContainerType = typename Superclass::EquationContainerType;
  using EquationContainerPointer = typename Superclass::EquationContainerPointer;
  using TermContainerType = typename Superclass::TermContainerType;
  using TermContainerPointer = typename Superclass::TermContainerPointer;
 
  using TermType = typename Superclass::TermType;
  using TermPointer = typename Superclass::TermPointer;
 
  using InputImageType = typename Superclass::InputImageType;
  using InputImagePixelType = typename Superclass::InputImagePixelType;
  using InputImageConstPointer = typename Superclass::InputImageConstPointer;
  using InputImageRegionType = typename Superclass::InputImageRegionType;
  using InputPixelRealType = typename Superclass::InputPixelRealType;
 
  static constexpr unsigned int ImageDimension = Superclass::ImageDimension;
 
  using LevelSetContainerType = typename Superclass::LevelSetContainerType;
  using LevelSetIdentifierType = typename Superclass::LevelSetIdentifierType;
 
  using LevelSetInputType = typename Superclass::LevelSetInputType;
  using LevelSetOutputType = typename Superclass::LevelSetOutputType;
  using LevelSetOutputRealType = typename Superclass::LevelSetOutputRealType;
  using LevelSetDataType = typename Superclass::LevelSetDataType;
 
  using LevelSetLayerType = typename LevelSetType::LayerType;
 
  using LevelSetLabelMapType = typename LevelSetType::LabelMapType;
  using LevelSetLabelMapPointer = typename LevelSetType::LabelMapPointer;
 
 
  using IdListType = typename Superclass::IdListType;
  using IdListIterator = typename Superclass::IdListIterator;
  using IdListImageType = typename Superclass::IdListImageType;
  using CacheImageType = typename Superclass::CacheImageType;
  using DomainMapImageFilterType = typename Superclass::DomainMapImageFilterType;
 
  using StoppingCriterionType = typename Superclass::StoppingCriterionType;
  using StoppingCriterionPointer = typename Superclass::StoppingCriterionPointer;
 
  using InputImageConstIteratorType = ImageRegionConstIteratorWithIndex<InputImageType>;
 
  using UpdateLevelSetFilterType =
    UpdateWhitakerSparseLevelSet<ImageDimension, LevelSetOutputType, EquationContainerType>;
  using UpdateLevelSetFilterPointer = typename UpdateLevelSetFilterType::Pointer;
 
  void
  SetNumberOfWorkUnits(const ThreadIdType numberOfThreads);
 
  ThreadIdType
  GetNumberOfWorkUnits() const;
 
protected:
  LevelSetEvolution();
  ~LevelSetEvolution() override;
 
  using NodePairType = std::pair<LevelSetInputType, LevelSetOutputType>;
 
  // For sparse case, the update buffer needs to be the size of the active layer
  std::map<IdentifierType, LevelSetLayerType *> m_UpdateBuffer;
 
  void
  AllocateUpdateBuffer() override;
 
  void
  ComputeIteration() override;
 
  void
  ComputeTimeStepForNextIteration() override;
 
  void
  UpdateLevelSets() override;
 
  void
  UpdateEquations() override;
 
  using SplitLevelSetPartitionerType = ThreadedIteratorRangePartitioner<typename LevelSetType::LayerConstIterator>;
  friend class LevelSetEvolutionComputeIterationThreader<LevelSetType, SplitLevelSetPartitionerType, Self>;
  using SplitLevelSetComputeIterationThreaderType =
    LevelSetEvolutionComputeIterationThreader<LevelSetType, SplitLevelSetPartitionerType, Self>;
  typename SplitLevelSetComputeIterationThreaderType::Pointer m_SplitLevelSetComputeIterationThreader;
};
 
 
// Shi
template <typename TEquationContainer, unsigned int VDimension>
class ITK_TEMPLATE_EXPORT LevelSetEvolution<TEquationContainer, ShiSparseLevelSetImage<VDimension>>
  : public LevelSetEvolutionBase<TEquationContainer, ShiSparseLevelSetImage<VDimension>>
{
public:
  ITK_DISALLOW_COPY_AND_MOVE(LevelSetEvolution);
 
  using LevelSetType = ShiSparseLevelSetImage<VDimension>;
 
  using Self = LevelSetEvolution;
  using Pointer = SmartPointer<Self>;
  using ConstPointer = SmartPointer<const Self>;
  using Superclass = LevelSetEvolutionBase<TEquationContainer, LevelSetType>;
 
  itkNewMacro(Self);
 
  itkTypeMacro(LevelSetEvolution, LevelSetEvolutionBase);
 
  using EquationContainerType = typename Superclass::EquationContainerType;
  using EquationContainerPointer = typename Superclass::EquationContainerPointer;
  using TermContainerType = typename Superclass::TermContainerType;
  using TermContainerPointer = typename Superclass::TermContainerPointer;
 
  using TermType = typename Superclass::TermType;
  using TermPointer = typename Superclass::TermPointer;
 
  using InputImageType = typename Superclass::InputImageType;
  using InputImagePixelType = typename Superclass::InputImagePixelType;
  using InputImageConstPointer = typename Superclass::InputImageConstPointer;
  using InputImageRegionType = typename Superclass::InputImageRegionType;
  using InputPixelRealType = typename Superclass::InputPixelRealType;
 
  static constexpr unsigned int ImageDimension = Superclass::ImageDimension;
 
  using LevelSetContainerType = typename Superclass::LevelSetContainerType;
  using LevelSetIdentifierType = typename Superclass::LevelSetIdentifierType;
 
  using LevelSetInputType = typename Superclass::LevelSetInputType;
  using LevelSetOutputType = typename Superclass::LevelSetOutputType;
  using LevelSetOutputRealType = typename Superclass::LevelSetOutputRealType;
  using LevelSetDataType = typename Superclass::LevelSetDataType;
 
  using LevelSetLayerType = typename LevelSetType::LayerType;
 
  using LevelSetLabelMapType = typename LevelSetType::LabelMapType;
  using LevelSetLabelMapPointer = typename LevelSetType::LabelMapPointer;
 
 
  using IdListType = typename Superclass::IdListType;
  using IdListIterator = typename Superclass::IdListIterator;
  using IdListImageType = typename Superclass::IdListImageType;
  using CacheImageType = typename Superclass::CacheImageType;
  using DomainMapImageFilterType = typename Superclass::DomainMapImageFilterType;
 
  using StoppingCriterionType = typename Superclass::StoppingCriterionType;
  using StoppingCriterionPointer = typename Superclass::StoppingCriterionPointer;
 
  using InputImageConstIteratorType = ImageRegionConstIteratorWithIndex<InputImageType>;
 
  using UpdateLevelSetFilterType = UpdateShiSparseLevelSet<ImageDimension, EquationContainerType>;
  using UpdateLevelSetFilterPointer = typename UpdateLevelSetFilterType::Pointer;
 
  LevelSetEvolution() = default;
  ~LevelSetEvolution() override = default;
 
protected:
  void
  UpdateLevelSets() override;
 
  void
  UpdateEquations() override;
};
 
// Malcolm
template <typename TEquationContainer, unsigned int VDimension>
class ITK_TEMPLATE_EXPORT LevelSetEvolution<TEquationContainer, MalcolmSparseLevelSetImage<VDimension>>
  : public LevelSetEvolutionBase<TEquationContainer, MalcolmSparseLevelSetImage<VDimension>>
{
public:
  ITK_DISALLOW_COPY_AND_MOVE(LevelSetEvolution);
 
  using LevelSetType = MalcolmSparseLevelSetImage<VDimension>;
 
  using Self = LevelSetEvolution;
  using Pointer = SmartPointer<Self>;
  using ConstPointer = SmartPointer<const Self>;
  using Superclass = LevelSetEvolutionBase<TEquationContainer, LevelSetType>;
 
  itkNewMacro(Self);
 
  itkTypeMacro(LevelSetEvolution, LevelSetEvolutionBase);
 
  using EquationContainerType = typename Superclass::EquationContainerType;
  using EquationContainerPointer = typename Superclass::EquationContainerPointer;
  using TermContainerType = typename Superclass::TermContainerType;
  using TermContainerPointer = typename Superclass::TermContainerPointer;
 
  using TermType = typename Superclass::TermType;
  using TermPointer = typename Superclass::TermPointer;
 
  using InputImageType = typename Superclass::InputImageType;
  using InputImagePixelType = typename Superclass::InputImagePixelType;
  using InputImageConstPointer = typename Superclass::InputImageConstPointer;
  using InputImageRegionType = typename Superclass::InputImageRegionType;
  using InputPixelRealType = typename Superclass::InputPixelRealType;
 
  static constexpr unsigned int ImageDimension = Superclass::ImageDimension;
 
  using LevelSetContainerType = typename Superclass::LevelSetContainerType;
  using LevelSetIdentifierType = typename Superclass::LevelSetIdentifierType;
 
  using LevelSetInputType = typename Superclass::LevelSetInputType;
  using LevelSetOutputType = typename Superclass::LevelSetOutputType;
  using LevelSetOutputRealType = typename Superclass::LevelSetOutputRealType;
  using LevelSetDataType = typename Superclass::LevelSetDataType;
 
  using LevelSetLayerType = typename LevelSetType::LayerType;
  using LevelSetLayerIterator = typename LevelSetType::LayerIterator;
 
  using LevelSetLabelMapType = typename LevelSetType::LabelMapType;
  using LevelSetLabelMapPointer = typename LevelSetType::LabelMapPointer;
 
 
  using IdListType = typename Superclass::IdListType;
  using IdListIterator = typename Superclass::IdListIterator;
  using IdListImageType = typename Superclass::IdListImageType;
  using CacheImageType = typename Superclass::CacheImageType;
  using DomainMapImageFilterType = typename Superclass::DomainMapImageFilterType;
 
  using StoppingCriterionType = typename Superclass::StoppingCriterionType;
  using StoppingCriterionPointer = typename Superclass::StoppingCriterionPointer;
 
  using InputImageConstIteratorType = ImageRegionConstIteratorWithIndex<InputImageType>;
 
  using UpdateLevelSetFilterType = UpdateMalcolmSparseLevelSet<ImageDimension, EquationContainerType>;
  using UpdateLevelSetFilterPointer = typename UpdateLevelSetFilterType::Pointer;
 
  LevelSetEvolution() = default;
  ~LevelSetEvolution() override = default;
 
protected:
  void
  UpdateLevelSets() override;
  void
  UpdateEquations() override;
};
} // namespace itk
 
#ifndef ITK_MANUAL_INSTANTIATION
#  include "itkLevelSetEvolution.hxx"
#endif
 
#endif // itkLevelSetEvolution_h