#include <itkMRCHeaderObject.h>

Public Attributes
float	alpha

float	beta

float	gamma

int16_t	idtype

int16_t	lens

int32_t	mode

int32_t	mx

int32_t	my

int32_t	mz

int16_t	nd1

int16_t	nd2

int16_t	nint

int8_t	notused2 [28]

int16_t	nreal

int32_t	nxstart

int32_t	nystart

int32_t	nzstart

float	rms

float	tiltangles [6]

int16_t	vd1

int16_t	vd2

float	xlen

float	xorg

float	ylen

float	yorg

float	zlen

float	zorg

Detailed Description

plain old data structure of the MRC header as used by IMOD. This header must be 1024 bytes.

The structure of the MRC header taken from: http://bio3d.colorado.edu/imod/doc/mrc_format.txt with permission from David Mastronarde on 8/21/2009

Definition at line 66 of file itkMRCHeaderObject.h.

Member Data Documentation

◆ alpha

float itk::MRCHeaderObject::Header::alpha

cell angles (ignored)

Definition at line 102 of file itkMRCHeaderObject.h.

◆ beta

float itk::MRCHeaderObject::Header::beta

Definition at line 103 of file itkMRCHeaderObject.h.

◆ gamma

float itk::MRCHeaderObject::Header::gamma

map column 1=x,2=y,3=z. (ignored)
map row 1=x,2=y,3=z. (ignored)
map section 1=x,2=y,3=z. (ignored)

Definition at line 104 of file itkMRCHeaderObject.h.

◆ idtype

int16_t itk::MRCHeaderObject::Header::idtype

Definition at line 159 of file itkMRCHeaderObject.h.

◆ lens

int16_t itk::MRCHeaderObject::Header::lens

Definition at line 161 of file itkMRCHeaderObject.h.

◆ mode

int32_t itk::MRCHeaderObject::Header::mode

< Number of Columns < Number of Rows < Number of Sections Types of pixel in image. Values used by IMOD: 0 = unsigned bytes, 1 = signed short integers (16 bits), 2 = float, 3 = short * 2, (used for complex data) 4 = float * 2, (used for complex data) 6 = unsigned 16-bit integers (non-standard) 16 = unsigned char * 3 (for rgb data, non-standard)

Definition at line 84 of file itkMRCHeaderObject.h.

◆ mx

int32_t itk::MRCHeaderObject::Header::mx

Grid size in X, Y, and Z

Definition at line 92 of file itkMRCHeaderObject.h.

◆ my

int32_t itk::MRCHeaderObject::Header::my

Definition at line 93 of file itkMRCHeaderObject.h.

◆ mz

int32_t itk::MRCHeaderObject::Header::mz

Definition at line 94 of file itkMRCHeaderObject.h.

◆ nd1

int16_t itk::MRCHeaderObject::Header::nd1

Definition at line 162 of file itkMRCHeaderObject.h.

◆ nd2

int16_t itk::MRCHeaderObject::Header::nd2

Definition at line 163 of file itkMRCHeaderObject.h.

◆ nint

int16_t itk::MRCHeaderObject::Header::nint

< Minimum pixel value.
< Maximum pixel value.
< Mean pixel value.
< image type
< space group number
< number of bytes in extended header < Creator ID
< extra data (not used)

Definition at line 139 of file itkMRCHeaderObject.h.

◆ notused2

int8_t itk::MRCHeaderObject::Header::notused2[28]

extra data (not used)

Definition at line 156 of file itkMRCHeaderObject.h.

◆ nreal

int16_t itk::MRCHeaderObject::Header::nreal

Definition at line 141 of file itkMRCHeaderObject.h.

◆ nxstart

int32_t itk::MRCHeaderObject::Header::nxstart

Starting point of sub image. (ignored)

Definition at line 87 of file itkMRCHeaderObject.h.

◆ nystart

int32_t itk::MRCHeaderObject::Header::nystart

Definition at line 88 of file itkMRCHeaderObject.h.

◆ nzstart

int32_t itk::MRCHeaderObject::Header::nzstart

Definition at line 89 of file itkMRCHeaderObject.h.

◆ rms

float itk::MRCHeaderObject::Header::rms

Definition at line 179 of file itkMRCHeaderObject.h.

◆ tiltangles

float itk::MRCHeaderObject::Header::tiltangles[6]

Definition at line 168 of file itkMRCHeaderObject.h.

◆ vd1

int16_t itk::MRCHeaderObject::Header::vd1

Definition at line 164 of file itkMRCHeaderObject.h.

◆ vd2

int16_t itk::MRCHeaderObject::Header::vd2

Definition at line 165 of file itkMRCHeaderObject.h.

◆ xlen

float itk::MRCHeaderObject::Header::xlen

Cell size; pixel spacing = xlen/mx

Definition at line 97 of file itkMRCHeaderObject.h.

◆ xorg

float itk::MRCHeaderObject::Header::xorg

Definition at line 171 of file itkMRCHeaderObject.h.

◆ ylen

float itk::MRCHeaderObject::Header::ylen

Definition at line 98 of file itkMRCHeaderObject.h.

◆ yorg

float itk::MRCHeaderObject::Header::yorg

Definition at line 172 of file itkMRCHeaderObject.h.

◆ zlen

float itk::MRCHeaderObject::Header::zlen

Definition at line 99 of file itkMRCHeaderObject.h.

◆ zorg

float itk::MRCHeaderObject::Header::zorg

Contains "MAP "
First byte has 17 for big- or 68 for little-endian

Definition at line 173 of file itkMRCHeaderObject.h.

The documentation for this struct was generated from the following file:

itkMRCHeaderObject.h

Public Attributes