ITK/Examples/ImageProcessing/SigmoidImageFilter

From KitwarePublic
< ITK‎ | Examples
Jump to: navigation, search
ITK Examples Baseline ImageProcessing TestSigmoidImageFilter.png

This example passes every pixel in an image through a Sigmoid function. The output displays the input image and the filtered image.

Please see the ITK Software Guide for a qualitative description of how Alpha and Beta affect the filter.

SigmoidImageFilter.cxx

#include "itkImage.h"
#include "itkImageFileReader.h"
#include "itkSigmoidImageFilter.h"
 
#include "QuickView.h"
 
int main(int argc, char *argv[])
{
  if(argc < 2)
    {
    std::cerr << "Usage: ";
    std::cerr << argv[0] << " inputImageFile [alpha] [beta]" << std::endl;
    return EXIT_FAILURE;
    }
 
  double alpha = 5.0;
  double beta = 10.0;
  if (argc > 2)
    {
    alpha = atof(argv[2]);
    }
  if (argc > 3)
    {
    beta = atof(argv[3]);
    }
 
  typedef itk::Image<unsigned char, 2> ImageType;
  typedef itk::ImageFileReader<ImageType> ReaderType;
 
  ReaderType::Pointer reader = ReaderType::New();
  reader->SetFileName(argv[1]);
 
  typedef itk::SigmoidImageFilter <ImageType, ImageType>
    SigmoidImageFilterType;
 
  SigmoidImageFilterType::Pointer sigmoidFilter
    = SigmoidImageFilterType::New();
  sigmoidFilter->SetInput(reader->GetOutput());
  sigmoidFilter->SetOutputMinimum(0);
  sigmoidFilter->SetOutputMaximum(255);
  sigmoidFilter->SetAlpha(alpha);
  sigmoidFilter->SetBeta(beta);
 
  QuickView viewer;
  viewer.AddImage(
    reader->GetOutput(),true,
    itksys::SystemTools::GetFilenameName(argv[1]));  
 
  std::stringstream desc;
  desc << "SigmoidImageFilter\nalpha = " << alpha
       << " beta = " << beta;
  viewer.AddImage(
    sigmoidFilter->GetOutput(),
    true,
    desc.str());  
 
  viewer.Visualize();
 
  return EXIT_SUCCESS;
}

CMakeLists.txt

cmake_minimum_required(VERSION 3.9.5)
 
project(SigmoidImageFilter)
 
find_package(ITK REQUIRED)
include(${ITK_USE_FILE})
if (ITKVtkGlue_LOADED)
  find_package(VTK REQUIRED)
  include(${VTK_USE_FILE})
else()
  find_package(ItkVtkGlue REQUIRED)
  include(${ItkVtkGlue_USE_FILE})
  set(Glue ItkVtkGlue)
endif()
 
add_executable(SigmoidImageFilter MACOSX_BUNDLE SigmoidImageFilter.cxx)
target_link_libraries(SigmoidImageFilter
  ${Glue}  ${VTK_LIBRARIES} ${ITK_LIBRARIES})

Download and Build SigmoidImageFilter

Click here to download SigmoidImageFilter. and its CMakeLists.txt file. Once the tarball SigmoidImageFilter.tar has been downloaded and extracted,

cd SigmoidImageFilter/build 
  • If ITK is installed:
cmake ..
  • If ITK is not installed but compiled on your system, you will need to specify the path to your ITK build:
cmake -DITK_DIR:PATH=/home/me/itk_build ..

Build the project,

make

and run it:

./SigmoidImageFilter

WINDOWS USERS PLEASE NOTE: Be sure to add the VTK and ITK bin directories to your path. This will resolve the VTK and ITK dll's at run time.

Building All of the Examples

Many of the examples in the ITK Wiki Examples Collection require VTK. You can build all of the the examples by following these instructions. If you are a new VTK user, you may want to try the Superbuild which will build a proper ITK and VTK.

ItkVtkGlue

ITK >= 4

For examples that use QuickView (which depends on VTK), you must have built ITK with Module_ITKVtkGlue=ON.

ITK < 4

Some of the ITK Examples require VTK to display the images. If you download the entire ITK Wiki Examples Collection, the ItkVtkGlue directory will be included and configured. If you wish to just build a few examples, then you will need to download ItkVtkGlue and build it. When you run cmake it will ask you to specify the location of the ItkVtkGlue binary directory.