ITK/Release 3.20 Changed From Previous
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This release covers the period April 15 2010 through July 12 2010
Changes in this Release
CMakeLists.txt ENH: Updating the minor version number in preparation for releasing ITK 3.20. ENH: Updating ITK_VERSION_MINOR to "18" in preparation for the release of ITK 3.18. CMake/CTestCustom.ctest.in CMake/InsightValgrind.supp ENH: suppression added for the dynamic analysis suppression file Code/Algorithms/itkBinaryMedialNodeMetric ENH: Added a new test for itkBinaryMedialNodeMetric. In the process a bug in the implementation was fixed pertaining to the sorting of eigenvalues in BinaryMedialNodeMetric::OrderValues(). Code/Algorithms/itkBinaryMedialNodeMetr BUG: Attempting to debug the few sporadic failures. Made sure all arrays were initialized and that the success check in the test has a small tolerance for precision errors ENH: Added a new test for itkBinaryMedialNodeMetric. In the process a bug in the implementation was fixed pertaining to the sorting of eigenvalues in BinaryMedialNodeMetric::OrderValues(). Code/Algorithms/itkFFTComplexConjugateToRealImageFilter STYLE: add something in the doc to make doxygen generate something in wrapitk Code/Algorithms/itkFastMarchingImageFilter BUG: Progress never reached 100 percent. Set progress to 1.0 when the stopping condition is reached. Code/Algorithms/itkVoronoiDiagram2DGenerator Code/Algorithms/itkVoronoiSegmentationRGBImageFilter BUG: floating point divide by zero in atan(). Use atan2() instead. Also check for atan2(0,0) Code/BasicFilters/itkCastImageFilter Code/BasicFilters/itkDiscreteGaussianImageFilter BUG: 10785 Improved performance of the filter by reordering the dirctional convolutions and added a ivar to determin the number of streams Code/BasicFilters/itkDiscreteGaussianImageFilter BUG: 10785 Improved performance of the filter by reordering the dirctional convolutions and added a ivar to determin the number of streams Code/BasicFilters/itkHessianRecursiveGaussianImageFilter BUG: fix to bug 0010599 and introduction of a new test itkHessianRecursiveGaussianImageFilterScaleSpaceTest testing the behavior of itkHessianRecursiveGaussianImageFilter in scale-space for dimensions 3 and greater Code/BasicFilters/itkSmoothingRecursiveGaussianImageFilter ENH: Allow non-isotropic sigmas to be applied across each axis. Code/BasicFilters/itkSmoothingRecursiveGaussianImageFilter ENH: Allow non-isotropic sigmas to be applied across each axis. Code/BasicFilters/itkTriangleMeshToBinaryImageFilter BUG: direction cosines were not accounted for - if different from identity matrix it would cause crash Code/BasicFilters/itkTriangleMeshToBinaryImageFilter ENH: printing newly added variable m_Direction in printself method BUG: direction cosines were not accounted for - if different from identity matrix it would cause crash Code/BasicFilters/itkTriangleMeshToSimplexMeshFilter BUG: wrong index reported in exception (occurs rarely) Code/Common/itkBloxCoreAtomPixel BUG: Updated itkBinaryMedialNodeMetricTest to only run when ITK_USE_CENTERED_COORDINATES_CONSISTENTLY is enabled. The algorithm does not work properly when this option is disabled Code/Common/itkBloxCoreAtomPixel BUG: Updated itkBinaryMedialNodeMetricTest to only run when ITK_USE_CENTERED_COORDINATES_CONSISTENTLY is enabled. The algorithm does not work properly when this option is disabled Code/Common/itkImageDuplicator DOC: fix doxygen comments Code/Common/itkMacro Code/Common/itkMe Code/Common/itkMetaDataObject COMP: Trying to make specialized MetaDataObject printing work + unused parameter warning fix Code/Common/itkNonUniformBSpline Code/Common/itkNonUniformBSpline COMP: Fixed Borland warning about unused variable. COMP: Temporarily commenting out vnl_matrix_inverse lines that fail to compile in many platforms. Code/Common/itkScaleVersor3DTransform Code/Common/itkScaleVersor3DTransform Code/Common/itk_hashtable Code/IO/itkAnalyzeImageIO BUG: AnalyzeImageIO was not using the right field to store the acquitition time. Added a test to exercise the storage and retrieval of metadata in the image file format. Code/IO/itkGDCMImageIO Code/IO/itkImageIOBase Code/IO/itkImageIOFactory BUG: BioRad files can appear to be DICOM files without a preamble. Move BioRad factory before GDCM factory. Code/IO/itkMetaImageIO COMP: Trying to fix borland compile errors Code/IO/itkNiftiImageIO BUG:10899: Addressed memory leak when a manually instantiated Nifti filter was used multiple times. Code/Numerics/itkLBFGSBOptimizer Code/Numerics/itkLBFGSBOptimizer Code/Numerics/Statistics/itkExpectationMaximizationMixtureModelEstimator Code/Review/CMakeLists.txt ENH: adding Object factory for Review ImageIO classes Code/Review/itkAutoCropLabelMapFilter ENH: GetRegion() from the superclass already return the cropped region, so there is no need for GetCropRegion(). BUG: 0010513: Adding Get functions for calculated crop region in itkAutoCropLabelMapFilter (bug 0010513) Code/Review/itkAutoCropLabelMapFilter ENH: GetRegion() from the superclass already return the cropped region, so there is no need for GetCropRegion(). Code/Review/itkDirectFourierReconstructionImageToImageFilter ** */ Code/Review/itkDiscreteGaussianDerivativeImageFilter BUG: 10785 Improved performance of the filter by reordering the dirctional convolutions and added a ivar to determin the number of streams Code/Review/itkDiscreteGaussianDerivativeImageFilter BUG: 10785 Improved performance of the filter by reordering the dirctional convolutions and added a ivar to determin the number of streams Code/Review/itkGenericUtilities BUG: Added itkMRCImageIOTest.cxx to test MRCImageIO system. Also removed Local namespace from all files associated with the paper. Code/Review/itkHessianToObjectnessMeasureImageFilter ENH: Added progress support, multi-threaded the computation,changed using SymmetricEigenAnalysisImageFilter to SymmetricEigenAnalysis calculator, too alpha and beta to the limits when they are zero. These changes significantly reduce memory usage and improve performance. Code/Review/itkHessianToObjectnessMeasureImageFilter ENH: Added progress support, multi-threaded the computation,changed using SymmetricEigenAnalysisImageFilter to SymmetricEigenAnalysis calculator, too alpha and beta to the limits when they are zero. These changes significantly reduce memory usage and improve performance. Code/Review/itkMRCHeaderObject BUG: Added itkMRCImageIOTest.cxx to test MRCImageIO system. Also removed Local namespace from all files associated with the paper. 3171 by Lowekamp B., Chen D. Code/Review/itkMRCHeaderObject BUG: Added itkMRCImageIOTest.cxx to test MRCImageIO system. Also removed Local namespace from all files associated with the paper. 3171 by Lowekamp B., Chen D. Code/Review/itkMRCImageIO BUG: Spacing should default to 1 when padding from a lesser dimension image to write to 3d BUG: Fixed segfault in itkMRCImageIO.cxx when using 1 or 2 dimensions. Error was caused by trying to access indices 1 and 2 of m_Spacing and m_Origin without checking dimensionality. COMP: VS6 require explicit template parameterization for templated member functions Code/Review/itkMRCImageIO BUG: Corrected the Superclass typedef and the itkTypeMacro COMP: Moved templated function into header to avoid VS 6 issues. 3171 by Lowekamp B., Chen D. Code/Review/itkMRCImageIOFactory ENH: adding Object factory for Review ImageIO classes Code/Review/itkMRCImageIOFactory ENH: Adding ImageIOFactories for MRCImageIO and VTKImageIO2 Code/Review/itkMultiScaleHessianBasedMeasureImageFilter BUG: added check for calculation of progress to avoid a divide by zero when m_NumberOfSigmaSteps is zero Code/Review/itkQuadEdge Code/Review/itkQuadEdgeMe Code/Review/itkQuadEdgeMeshBaseIterator ** */ Code/Review/itkQuadEdgeMeshFrontIterator ** */ Code/Review/itkQuadEdgeMeshPoint ** */ Code/Review/itkQuadEdgeMeshTraits Code/Review/Attic/itkScaleVersor3DTransform STYLE: Further code review in preparation for moving the class into Common. Code/Review/Attic/itkScaleVersor3DTransform STYLE: Further code review in preparation for moving the class into Common. Code/Review/itkShapeLabelMapFilter BUG: Fix overflow with negative indexes Code/Review/itkSliceBySliceImageFilter BUG: 0009923 Added missing include in itkSliceBySliceImageFilter, add it as first include in filter's test Code/Review/itkStatisticsLabelMapFilter ENH: Added comment to redirect to the Migration Users Guide. Code/Review/itkStreamingImageIOBase COMP: BCC appears not to have a streampos += streamoff operator so it is changed to streampos = streampos + streamoff ENH: Removing "Local" namespace that was used as a temporary help. Code/Review/itkStreamingImageIOBase ** */ 3171 by Lowekamp B., Chen D. Code/Review/itkTransformIOBase Code/Review/itkVTKImageIO2 COMP: On systems that do not have uint64_t, use double for swapping type if component size is 8. BUG: Added itkMRCImageIOTest.cxx to test MRCImageIO system. Also removed Local namespace from all files associated with the paper. COMP: not all systems have uint64_t added ITK_HAS_INT definition check Code/Review/itkVTKImageIO2 BUG: Corrected the Superclass typedef and the itkTypeMacro 3171 by Lowekamp B., Chen D. Code/Review/itkVTKImageIO2Factory ENH: adding Object factory for Review ImageIO classes Code/Review/itkVTKImageIO2Factory ENH: Adding ImageIOFactories for MRCImageIO and VTKImageIO2 Code/Review/Statistics/itkExpectationMaximizationMixtureModelEstimator BUG: Should never allow a division by 0. Code/Review/Statistics/itkHistogramToEntropyImageFilter ENH: Porting to the new Statistics Framework the filters that convert Histograms into Images. Code/Review/Statistics/itkHistogramToImageFilter ENH: Porting to the new Statistics Framework the filters that convert Histograms into Images. Code/Review/Statistics/itkHistogramToImageFilter ENH: Porting to the new Statistics Framework the filters that convert Histograms into Images. Code/Review/Statistics/itkHistogramToIntensityImageFilter ENH: Porting to the new Statistics Framework the filters that convert Histograms into Images. Code/Review/Statistics/itkHistogramToLogProbabilityImageFilter ENH: Porting to the new Statistics Framework the filters that convert Histograms into Images. Code/Review/Statistics/itkHistogramToProbabilityImageFilter ENH: Porting to the new Statistics Framework the filters that convert Histograms into Images. Code/Review/Statistics/itkWeightedCovarianceSampleFilter BUG: Added explicit run-time MeasurementVector length specification. Code/SpatialObject/itkContourSpatialObject BUG: Adding modified versions of itkMetaArrowConverter.txx, itkContourSpatialObject.h, and itkContourSpatialObject.txx that I forgot to add with previous commits (causing test failure). Code/SpatialObject/itkContourSpatialObject COMP: Removed parameter name "point" from itkContourSpatialObject::IsInside since no longer used in order to remove compiler warnings BUG: Adding modified versions of itkMetaArrowConverter.txx, itkContourSpatialObject.h, and itkContourSpatialObject.txx that I forgot to add with previous commits (causing test failure). Code/SpatialObject/itkMetaArrowConverter BUG: Fixed the conversion of Direction between ArrowSpatialObject and MetaArrow by adding a new field to MetaArrow rather than trying to put the direction vector into the Orientation matrix. Code/SpatialObject/itkPolygonSpatialObject BUG: attempt to copy-construct an iterator from a singular iterator. Examples/Registration/CMakeLists.txt ENH: Condition ImageRegistration20Test to only be run in a Release build. Testing/CMakeLists.txt COMP: Need FIND_PACKAGE(Java) when building inside tree as well as outside. Testing/Code/Algorithms/CMakeLists.txt ENH: Added a test of the VoronoiSegmentationRGBImageFilter. This test creates an image with foreground objects and random rgb noise and checks that the segmentation performs reasonably well. BUG: Disabled itkBinaryMedialNodeMetricTest in CMakeLists file and itkAlgorithmsTests4.cxx so that the underlying Blox code can be debugged to uncover the cause of random test failure. Testing/Code/Algorithms/itkAlgorithmsTests4 ENH: Added a test of the VoronoiSegmentationRGBImageFilter. This test creates an image with foreground objects and random rgb noise and checks that the segmentation performs reasonably well. BUG: Disabled itkBinaryMedialNodeMetricTest in CMakeLists file and itkAlgorithmsTests4.cxx so that the underlying Blox code can be debugged to uncover the cause of random test failure. Testing/Code/Algorithms/itkBinaryMedialNodeMetricTest BUG: Attempting to debug the few sporadic failures. Made sure all arrays were initialized and that the success check in the test has a small tolerance for precision errors ENH: Added coverage for printing and GetNameOfClass in itkBinaryMedialNodeMetric Testing/Code/Algorithms/itkImagePCAShapeModelEstimatorTest COMP: fix warning NUMLARGESTPC is an unsigned int Testing/Code/Algorithms/itkVoronoiSegmentationRGBImageFilterTest BUG: Added still more debug output to itkVoronoiSegmentationRGBImageFilterTest.cxx in an attempt to fix runtime errors when build with bcc ENH: Added a test of the VoronoiSegmentationRGBImageFilter. This test creates an image with foreground objects and random rgb noise and checks that the segmentation performs reasonably well. Testing/Code/BasicFilters/CMakeLists.txt BUG: fix to bug 0010599 and introduction of a new test itkHessianRecursiveGaussianImageFilterScaleSpaceTest testing the behavior of itkHessianRecursiveGaussianImageFilter in scale-space for dimensions 3 and greater Testing/Code/BasicFilters/itkAdaptImageFilterTest STYLE: Revert an erroneous 'cerr' message to 'cout'. Testing/Code/BasicFilters/itkBasicFiltersTests3 BUG: fix to bug 0010599 and introduction of a new test itkHessianRecursiveGaussianImageFilterScaleSpaceTest testing the behavior of itkHessianRecursiveGaussianImageFilter in scale-space for dimensions 3 and greater Testing/Code/BasicFilters/itkHessianRecursiveGaussianFilterScaleSpaceTest BUG: replacing exp with vcl_exp, thanks to Marius Staring for pointing this out Testing/Code/BasicFilters/itkTriangleMeshToSimplexMeshFilter2Test Testing/Code/Common/CMakeLists.txt ENH: Added test for itkTransformFactoryBase ENH: Adding explicit test fo the ImageToImageFilter class. Testing/Code/Common/itkBSplineDeformableTransformTest3 COMP: should be int instead of unsigned int Testing/Code/Common/itkCommonTests2 ENH: Added test for itkTransformFactoryBase ENH: Adding explicit test fo the ImageToImageFilter class. Testing/Code/Common/itkImageComputeOffsetAndIndexTest COMP: index is filled with 0 values (warning on gcc 4.4.4). Testing/Code/Common/itkImageToImageFilterTest COMP: Adding a explicit typedef for Superclass in order to help the SunCC compiler. ENH: Adding explicit test fo the ImageToImageFilter class. Testing/Code/Common/itkNonUniformBSplineTest COMP: Fixed warnings about initializing integer variables with doubles. Testing/Code/Common/itkScaleVersor3DTransformTest COMP: resolving warnings 'excp' : unreferenced local variable Testing/Code/Common/itkTransformFactoryBaseTest ENH: Added test for itkTransformFactoryBase Testing/Code/IO/CMakeLists.txt BUG: Outcommenting LSM write test. It fails. BUG: AnalyzeImageIO was not using the right field to store the acquitition time. Added a test to exercise the storage and retrieval of metadata in the image file format. Testing/Code/IO/itkGDCMImageIOTest ENH: more code coverage by exercising get methods Testing/Code/IO/itkIOCommonTest BUG: accounting for case of no filename extension in this test Testing/Code/IO/itkIOTests BUG: AnalyzeImageIO was not using the right field to store the acquitition time. Added a test to exercise the storage and retrieval of metadata in the image file format. Testing/Code/IO/itkImageFileWriterTest2 BUG: Uninitialized image buffer was fixed. Testing/Code/IO/itkMetaImageIOTest BUG: Fixed failure of MetaImageStreamingIOTest and MetaImageCompressedStreamingIOTest. Problem was caused by using the same MetaImageIO object for both reading and writing in itkMetaImageStreamingIOTest.cxx Testing/Code/IO/itkMetaImageStreamingIOTest BUG: Fixed failure of MetaImageStreamingIOTest and MetaImageCompressedStreamingIOTest. Problem was caused by using the same MetaImageIO object for both reading and writing in itkMetaImageStreamingIOTest.cxx Testing/Code/IO/itkReadWriteImageWithDictionaryTest COMP: For Visual Studio 6, the map iterator cannot be safely used outside the DLL that contains the map. The part of the test that uses the MetaDataDictionary is removed for VS6, shared builds. COMP: Trying to fix MSVC link errors ENH: Added support for ITK_VoxelUnits and ITK_ExperimentDate in MetaImageIO. This relies on MetaObject::DistanceUnits and MetaObject::AcquisitionDate. Testing/Code/IO/itkSymmetricSecondRankTensorImageWriteReadTest Testing/Code/Numerics/itkLBFGSBOptimizerTest ENH: more code coverage by exercising get methods ENH: more code coverage by exercising get methods Testing/Code/Numerics/itkLBFGSOptimizerTest ENH: more code coverage by exercising get methods Testing/Code/Review/CMakeLists.txt ENH: Added itkVTKImageIO2Test.cxx as a test for the new itkVTKImageIO2 class in review Testing/Code/Review/itkAutoCropLabelMapFilterTest1 ENH: GetRegion() from the superclass already return the cropped region, so there is no need for GetCropRegion(). Testing/Code/Review/itkMRCImageIOTest ENH: add EXERCISE_BASIC_OBJECT_METHODS macro to increase code coverage BUG: Trying to fix VS6 compilation issue relating to use of templates in calling the WriteMRCImage and ReadMRCImage tests BUG: Added #include <numeric> to itkMRCImageIO.h so that std::accumulate would compile Testing/Code/Review/itkReviewTests3 Testing/Code/Review/itkReviewTests5 ENH: Added itkVTKImageIO2Test.cxx as a test for the new itkVTKImageIO2 class in review Testing/Code/Review/Attic/itkScaleVersor3DTransformTest ENH: Increased code coverage to 98% by exercising the SetMatrix() method. Testing/Code/Review/itkSliceBySliceImageFilterTest BUG: 0009923 Added missing include in itkSliceBySliceImageFilter, add it as first include in filter's test Testing/Code/Review/itkTestingMacros COMP: Temporary Borland compiler workaround Testing/Code/Review/itkTransformFileReaderWriterTest BUG: Fixed problem with default transformations not being registered by explicitly calling RegisterDefaultTransforms. There appears to be a logical flaw in the system for registering transforms where the defaults are only registered if no other transform is registered. While this seems to be a bug, changing it would break backwards compatibility, so it is left as is. BUG: 0010866 Reported on bug tracker. When registering a new transform, all the default registerd transform types are lost. Testing/Code/Review/itkVTKImageIO2Test ENH: add EXERCISE_BASIC_OBJECT_METHODS macro to increase code coverage COMP: Fix the compiler warnings being issued for itkVTKImageIO2Test::Read about index as an unused parameter. Also added an additional line of exception output to itkVTKImageIO2.cxx for the case when the element size is unknown BUG: Fixed Borland compiler bug in itkVTKImageIO2Test relating to calls to WriteVTKImage and added tests for CanReadFile and CanWriteFile Testing/Code/Review/Statistics/CMakeLists.txt ENH: Adding tests for the Histogram to Image Filters. Testing/Code/Review/Statistics/itkHistogramToEntropyImageFilterTest1 ENH: Adding tests for the Histogram to Image Filters. Testing/Code/Review/Statistics/itkHistogramToEntropyImageFilterTest2 Testing/Code/Review/Statistics/itkHistogramToIntensityImageFilterTest1 ENH: Adding tests for the Histogram to Image Filters. Testing/Code/Review/Statistics/itkHistogramToIntensityImageFilterTest2 Testing/Code/Review/Statistics/itkHistogramToLogProbabilityImageFilterTest1 ENH: Adding tests for the Histogram to Image Filters. Testing/Code/Review/Statistics/itkHistogramToLogProbabilityImageFilterTest2 Testing/Code/Review/Statistics/itkHistogramToProbabilityImageFilterTest1 ENH: Adding tests for the Histogram to Image Filters. Testing/Code/Review/Statistics/itkHistogramToProbabilityImageFilterTest2 Testing/Code/Review/Statistics/itkHistogramToTextureFeaturesFilterTest STYLE: removing blank spaces at the end of lines. Testing/Code/Review/Statistics/itkImageClassifierFilterTest BUG: Modify the test so that it creates a situation where the Expectation Maximization filter will not (initially) classify everything correctly. This will exercise the divide-by-zero fix committed in the Expectation Maximization Filter code. Testing/Code/Review/Statistics/itkStatisticsTests BUG: itkWeightedCovarianceSampleFilterTest2 was missing from test driver. ENH: Adding tests for the Histogram to Image Filters. Testing/Code/Review/Statistics/itkWeightedCovarianceSampleFilterTest2 Testing/Code/SpatialObject/CMakeLists.txt ENH: Added test for itkMetaArrowConverter. Added test to itkSpatialObjectTests5. Tests conversion between MetaArrow object and itkArrowSpatialObject. Currently only tests length conversion. Testing/Code/SpatialObject/itkContourSpatialObjectTest COMP: Removed dead argument names from ContourSpatialObject::IsInside and ContourSpatialObject::ValueAt. Also, removed argument names from itkContourSpatialObjectTest.cxx function since no parameters are used. Testing/Code/SpatialObject/itkMetaArrowConverterTest BUG: Fixed an error in the MetaArrowConverterTest pertaining to MetaArrow's Orientation field BUG: Fixed itkMetaArrowConverterTest.cxx in correspondence with itkMetaArrowConverter.txx. The test now properly tests to make sure direction is converted between ArrowSpatialObject and MetaArrow. BUG: fixing failures in itkMetaArrowConverterTest ENH: Added test for itkMetaArrowConverter. Added test to itkSpatialObjectTests5. Tests conversion between MetaArrow object and itkArrowSpatialObject. Currently only tests length conversion. Testing/Code/SpatialObject/itkSpatialObjectTests5 ENH: Added test for itkMetaArrowConverter. Added test to itkSpatialObjectTests5. Tests conversion between MetaArrow object and itkArrowSpatialObject. Currently only tests length conversion. Testing/Data/Input/HeadMRVolume.mhd ENH: Added test coverage for missed methods in itkMetaImageIO.h. Specifically, coverage was added for SupportsDimension, SetSubsamplingFactor, GetSubsamplingFactor, SetDoublePrecision, CanStreamWrite, and CanStreamRead. Testing/Data/Input/HeadMRVolumeCompressed.mha ENH: Added test coverage for missed methods in itkMetaImageIO.h. Specifically, coverage was added for SupportsDimension, SetSubsamplingFactor, GetSubsamplingFactor, SetDoublePrecision, CanStreamWrite, and CanStreamRead. Utilities/KWStyle/ITKOverwrite.txt 3171 by Lowekamp B., Chen D. Utilities/MetaIO/.svnrev ENH: subversion revision 2479 commited to CVS ENH: subversion revision 2437 commited to CVS ENH: subversion revision 2272 commited to CVS Utilities/MetaIO/CMakeLists.txt Utilities/MetaIO/Copyright.txt Utilities/MetaIO/localMetaConfiguration Utilities/MetaIO/metaArray Utilities/MetaIO/metaArray Utilities/MetaIO/metaArrow Utilities/MetaIO/metaArrow Utilities/MetaIO/metaBlob Utilities/MetaIO/metaBlob Utilities/MetaIO/metaCommand Utilities/MetaIO/metaCommand Utilities/MetaIO/metaContour Utilities/MetaIO/metaContour Utilities/MetaIO/metaDTITube Utilities/MetaIO/metaDTITube Utilities/MetaIO/metaEllipse Utilities/MetaIO/metaEllipse Utilities/MetaIO/metaEvent Utilities/MetaIO/metaForm Utilities/MetaIO/metaForm Utilities/MetaIO/metaGaussian Utilities/MetaIO/metaGaussian Utilities/MetaIO/metaGroup Utilities/MetaIO/metaGroup Utilities/MetaIO/metaITKUtils Utilities/MetaIO/metaImage Utilities/MetaIO/metaImage Utilities/MetaIO/metaImageTypes Utilities/MetaIO/metaImageUtils Utilities/MetaIO/metaImageUtils Utilities/MetaIO/metaLandmark Utilities/MetaIO/metaLandmark Utilities/MetaIO/metaLine Utilities/MetaIO/metaLine Utilities/MetaIO/metaMe Utilities/MetaIO/metaMesh Utilities/MetaIO/metaObject Utilities/MetaIO/metaObject Utilities/MetaIO/metaOutput Utilities/MetaIO/metaOutput Utilities/MetaIO/metaScene Utilities/MetaIO/metaScene Utilities/MetaIO/metaSurface Utilities/MetaIO/metaSurface Utilities/MetaIO/metaTransform Utilities/MetaIO/metaTransform Utilities/MetaIO/metaTube Utilities/MetaIO/metaTube Utilities/MetaIO/metaTubeGra Utilities/MetaIO/metaTubeGraph Utilities/MetaIO/metaTypes Utilities/MetaIO/metaUtils Utilities/MetaIO/metaUtils Utilities/MetaIO/metaVesselTube Utilities/MetaIO/metaVesselTube Utilities/NrrdIO/754 Utilities/NrrdIO/NrrdIO Utilities/NrrdIO/defaultsNrrd Utilities/NrrdIO/encodingRaw Utilities/NrrdIO/privateNrrd Utilities/NrrdIO/sane . Utilities/NrrdIO/write Utilities/expat/xmlparse Utilities/gdcm/src/gdcmDocument BUG: 0010833 GDCM parse fault for special SQ data elements. Apply patch as proposed by Greg Sharp. Utilities/itkjpeg/jdscale COMP: Fixed local variable that was shadowing a global declaration of a type. Utilities/itktiff/mkg3states COMP: Fixing warnings about shadowing variables. Utilities/itktiff/tif_codec COMP: Fixing warnings about shadowing variables. Utilities/itktiff/tif_color COMP: Fixing warnings about shadowing variables. Utilities/itktiff/tif_compress COMP: Fixing warnings about shadowing variables. Utilities/itktiff/tif_getimage COMP: Fixing warnings about shadowing variables. Utilities/itktiff/tif_print COMP: Fixing warnings about shadowing variables. Utilities/itktiff/tiffiop COMP: Fixing warnings about shadowing variables. Utilities/kwsys/CMakeLists.txt Utilities/kwsys/Configure.h.in Silence warnings on sgi compiler. Utilities/kwsys/Configure.hxx.in Utilities/kwsys/DynamicLoader Utilities/kwsys/DynamicLoader.hxx.in Utilities/kwsys/ProcessUNIX KWSys: Process tree kill for Solaris Utilities/kwsys/ProcessWin32 Utilities/kwsys/SharedForward.h.in Utilities/kwsys/SystemTools Fix for bug #10542, allow this to build on Tru64 Utilities/kwsys/SystemTools.hxx.in Utilities/kwsys/hashtable.hxx.in Silence warnings on sgi compiler. Fix for bug #10550, work around instantiation out of scope Utilities/kwsys/kwsysDateStamp.cmake KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp KWSys Nightly Date Stamp Utilities/kwsys/testAutoPtr Fix for bug #10550, work around instantiation out of scope Utilities/kwsys/testProcess Utilities/openjpeg/j2k COMP: Fixing warnings about local variables shadowing declarations of global symbols (variables and functions). Utilities/openjpeg/jp2 COMP: Fixing warnings about local variables shadowing declarations of global symbols (variables and functions). Utilities/openjpeg/openjpeg COMP: Fixing warnings about local variables shadowing declarations of global symbols (variables and functions). Utilities/openjpeg/pi COMP: Fixing warnings about local variables shadowing declarations of global symbols (variables and functions). Utilities/openjpeg/t2 COMP: Fixing warnings about local variables shadowing declarations of global symbols (variables and functions). Utilities/openjpeg/tcd COMP: Fixing warnings about local variables shadowing declarations of global symbols (variables and functions). Utilities/vxl/core/vnl/algo/vnl_lsqr Wrapping/CSwig/CMakeLists.txt BUG: ITK_WRAP_NEEDS_DEPEND must be set to 1 (on all platforms) for the parallel build to work. Wrapping/CSwig/IO/itkTkImageViewer2D BUG: 10532. Committing updated patch contributed by Steve Robbins, to make wrapping work with Tcl 8.5.