ITK/Release 4.8 Changed From Previous

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Changes from v4.8rc03..v4.8.0


Davis Vigneault (1):

     COMP: C++11 Warnings in thirdparty PNG module.

Matthew McCormick (9):

     COMP: Fix unused parameter warnings in itkMultiThreaderNoThreads.
     BUG: Do not output CMake log files in itkSystemInformationTest.
     COMP: Work around segfaults with VS12 in RegionOfInterestImageFilter.
     DOC: Update Wiki Examples Remote to June 26, 2015.
     COMP: Update ParabolicMorphology to address doxygen warning.
     COMP: Add missing exports in the ITKFEM module.
     BUG: Use CMAKE_LIBRARY_OUTPUT_DIRECTORY for build tree WrapITK.pth.
     DOC: Document grafting the input image in composite filters.
     DOC: Bump SphinxExample remote module version to 2015-07-02.


Changes from v4.8rc02..v4.8rc03


Bradley Lowekamp (3):

     BUG: Remove reliance on exceptions in StringTools::ToData methods
     BUG: Fix WriteCellsAsBinary and valgrind defects
     COMP: Explicitly export SingleValuedNonLinearVnlOptimizerv4

Matthew McCormick (4):

     COMP: Address may be used uninitialized in IdentityTransformTest.
     COMP: Address array subscript above bounds in VTKPolyDataReader.
     COMP: Work around GDCM test segfault with Clang 3.5+.
     BUG: Do not use pthreads with Emscripten.

Michka Popoff (1):

     ENH: Update PyInit for Python 3


Changes from v4.8rc01..v4.8rc02


Arnaud Gelas (2):

     BUG: memory leaks when calling itk::Mesh::Graft
     BUG: fix memory leaks in BorderQuadEdgeMeshFilter using itk::AutoPointer

Bradley Lowekamp (1):

     Revert selection "ENH: Add shared libraries for ITK libraries"

Davis Vigneault (1):

     STYLE: Minor typographical changes in ParameterizationQuadEdgeMeshFilter

Dženan Zukić (1):

     DOC: Improve docs for ConnectedComponentImageFilter

Hans Johnson (1):

     STYLE: Use consistent names in template parameters

Sean McBride (2):

     COMP: Update MINC to upstream 85145dca36
     BUG: updated MINC to a77da29


Changes from v4.7.0..v4.8rc01


Alexander Hewer (1):

     COMP: fixed error "Dunno about this gcc" for gcc 5.1

Arnaud Gelas (14):

     ENH: add MinimalPathExtraction as a remote module
     ENH: fix KWStyle errors for SubdivisionQuadEdgeMesh
     COMP: fix warning with non default template parameter for OutputImage
     COMP: missing ';' in itkSetClampMacro
     STYLE: no need to expose internal type
     COMP: fix warning with non default template parameter for OutputImage
     COMP: fix warning with non default template parameter for OutputImage
     BUG: fix BinaryImageToLabelMapFilter with negative OutputBackgroundValue
     DOC: add explanations about input and out filters
     COMP: missing include in IterativeTriangleCellSubdivision
     DOC: Improve documentation for ParameterizationQuadEdgeMeshFilter
     BUG: not all combinations were actually test
     ENH: add an exception in BorderQuadEdgeMeshFilter if no boundaries
     COMP: fix CMake warning in ITKModuleHeaderTest

Bill Lorensen (7):

     ENH: Update to KWStyle conformant version
     ENH: Add interpolate capability
     ENH: WikiExamples QuickView Update
     COMP: VTK AUTOINIT redefinition warnings
     COMP: Only require the minimal VTK modules
     COMP: Compiler hidden visibility on Mac compiler
     COMP: EventMacro backward compatibility

Brad King (25):

     COMP: Fix variable reference in ITKVtkGlue module files
     ENH: ExternalData: Allow local stores without any URL templates
     ENH: ExternalData: Warn on missing file instead of failing
     ENH: ExternalData: Add support for custom download scripts
     ENH: ExternalData: Add support for custom algorithm-to-URL mapping
     DOC: ExternalData: Update documentation to match CMake copy
     ENH: Teach UpdateThirdPartyFromUpstream to support spaces in path
     ENH: Improve UpdateThirdPartyFromUpstream for initial imports
     ENH: Require CMake 2.8.9 or greater
     ENH: Do not produce ITKGDCM library when using system GDCM
     ENH: Drop gdcm source subtree to prepare for fresh import
     ENH: Add script to update GDCM from upstream
     STYLE: Tell Git not to check whitespace in GDCM
     STYLE: Tell Git about larger files in GDCM
     COMP: Configure GDCM to build inside ITK
     COMP: Fix GDCM to handle older expat library
     COMP: Cleanup CMP0022 warnings in GDCM module
     COMP: Add missing include in GDCM source
     COMP: Teach GDCM to honor ITK_DYNAMIC_LOADING option
     ENH: KWSys: Tell Git not to export .gitattributes
     COMP: Remove cmake_minimum_required calls from GDCM
     COMP: Remove extra CMake policy settings in GDCM
     COMP: Use more standard SSE intrinsics in GDCM copy of OpenJPEG
     COMP: Fix GDCM std::accumulate initial value type
     ENH: Update version of CastXML built for wrapper generation

Bradley Lowekamp (48):

     PERF: Use ImageAlgorithm::Copy in ImageSeriesWriter
     BUG: Enable setting all zeroes for fixed parameters for displacement
     ENH: Refactor versor to matrix transform code
     DOC: Clarify that Scale Skew Versor does addition
     COMP: Fix unsafe usage of sprintf
     BUG: Correct Simularity3D Jacobian
     BUG: Ensure OptimizerParameters doesn't leak its helper
     BUG: Fix incorrectly ordering of template parameters
     COMP: check for search.h in libtiff
     BUG: restore the center point fixed parameters for scale transforms
     PERF: Remove frequent dynamic allocations used with std::vector
     COMP: Use _timezone for Visual Studio
     BUG: Restore IO support for BSplineDeformableTransform
     BUG: Enable VectorImage to work with the ImageSeriesWriter
     BUG: Replace std::cout message Warning marco
     BUG: Correct ExtractImageFilters Type macro
     DOC: Separately document IsNull and IsNotNull
     ENH: Modularize KWStyleTests
     BUG: Remove ExhaustiveOptimizer ivar which was unused
     STYLE: Update IOFDF to address KWStyle issues
     BUG: Fix undefined signed integer shift
     BUG: Fix IOFDFInDoxygenGroup test
     BUG: Update MGHImageIO for header guarder style
     BUG: Fix itkFDFImageIOTest link error on windows
     STYLE: Update SCIFIO for KWStyke failures
     BUG: Move LBFGSB callback helper to parent
     BUG: Use base's NumberOfIterations for stopping condition
     BUG: Update AmoebaOptimizer NumberOfIterations
     BUG: Use base's NumberOfIterations for stopping condition
     PERF: Report progress for linear transform only at scanline completion
     BUG: Correct convergence string check
     BUG: Avoid underflow in gradient range calculation
     ENH: Use return by value for ImageAlgorithm::EnlargeRegionOverBox
     BUG: No exception for 0 parameter transforms
     COMP: Address conversion compilation warning
     ENH: Use PrinSelfObjectMacro
     BUG: Use module's libraries for linking header test.
     ENH: Add export specifications to FFT library
     COMP: Address conversion compilation warning
     COMP: This patch address linking errors with WrapITK
     DOC: Improving documentation for the names inputs of the ProcessObject
     BUG: Isolate CannyEdgeDetection's internal filter from external
     PERF: Refactor ExpandImageFilter loop
     ENH: Add AtmoicInt class, use TimeStamp & LightObject
     COMP: Address signed to unsigned comparison warning in AtomicInt Test
     ENH: Move IsPrime and GreatestPrimeFactor to compiled cxx file
     COMP: Add export missing export specifications
     BUG: Fix reading HDF5 images into different dimension.

Brian Helba (2):

     ENH: Add scripts for automated updating of ThirdParty libraries
     ENH: Make Vector construction from scalar value explicit

Christopher Mullins (12):

     STYLE: Keep codesnippet lines under 80 characters.
     STYLE: Fix Latex blocks in documentation to include newlines.
     COMP: Fix clang warnings
     DOC: Fix Latex underscore for SoftwareGuide
     BUG: Return a correct voronoi partition in Danielsson filter example.
     STYLE: Fix Latex blocks in documentation to include newlines.
     DOC: Use the dilated version of the FivePoints image
     COMP: Use c++11 noexcept declarator.
     COMP: Fix override warnings on clang with GPU module and MINC
     COMP: Fix clang override warnings for Review module.
     COMP: Fix more clang warnings in review module
     COMP: Fix more clang override warnings in Review module.

Cyril Mory (3):

     BUG: Fixed itkWarpImageFilter wrong result in some cases
     ENH: Method to compute InputRequestedRegion in itkWarpImageFilter
     ENH: Moved some of itkWarpFilter from private to protected

David Froger (2):

     ENH: Check regions in HDF5 streaming test
     BUG: Fix HDF5 write streaming test.

Davis Vigneault (4):

     STYLE: Minor style and documentation changes to ITK examples.
     DOC: Minor changes and clarifications to the registration chapter of Book 2.
     STYLE: Minor wording and formatting changes to Software Guide Mesh examples.
     COMP: Build failure using EuclideanDistancePointMetric with mismatched meshes.

Dženan Zukić (4):

     COMP: VS 2012+ compile fixes and CMake warnings
     COMP: fixing quote matching in vtkGlue-related .cmake file
     ENH: adding reverse iteration test
     ENH: using scanline iterator instead of linear iterator

GDCM Upstream (1):

     GDCM 2015-04-29 (81e551fc)

Gary JIA (1):

     BUG: Fix memory leak at GPUCommon

Gaëtan Lehmann (21):

     BUG: fix extra carriage return in python callbacks
     ENH: use castxml in wrapping
     COMP: almost fix java build
     ENH: use modern cmake list operations in wrapping
     COMP: hide compiler warnings when building pcre and swig
     COMP: fix the IOFDF module name used in wrapping
     COMP: fix last python runtime warnings about unknown types
     COMP: fix undefined __float128 type with gcc
     BUG: reactivate PythonGetNameOfClass and fix the FDFImageIOFactory name
     COMP: fix warnings due to double MultipleValuedCostFunction wrapper
     BUG: fix ipython custom completion
     BUG: fix runtime information for cross correlation filters
     ENH: let the user choose the tradeoff between size and speed in fft operations
     ENH: update progress in ImageFileReader
     ENH: initialize the progress in ImageFileWriter
     BUG: fix extra line return in terminal progress display
     BUG: fix missing space before "done" in progress display
     ENH: pass ActualXDimensionIsOdd through the pipeline
     COMP: fixes for SizeGreatestPrimeFactor
     ENH: Add itkFFTPadImageFilter
     ENH: factorize shared code in itk::PadImageFilterBase

Gert Wollny (1):

     COMP: defining ITK_USE_FLOAT_SPACE_PRECISION

Hans Johnson (39):

     COMP: Add c++11 override designation
     COMP: Identify null pointer assignments
     STYLE: rm explicit void for parameterless function
     STYLE: Use ITK_NULLPTR to utilize c++11 features
     BUG: Incorrect addition of ITK_OVERRIDE
     COMP: Use STREQUAL instead of MATCH
     BUG: return type defaults to zero.
     BUG: ImageType, CofficientImageArray types missing
     DOC: Invalid doxygen return for void function.
     COMP: _Pragma suppress fltpnt equality warnings
     COMP: Allow exact floatpnt equality checks.
     COMP: Avoid floatpnt equality check
     COMP: Floatpnt equality for divisor
     COMP: Avoid unnecessary float pnt equality checks.
     PERF: Improve perf of ANTSNeighborhoodCorrelation
     BUG: Test depending on itkMesh.h in Common
     COMP: Make DCMTK header functions const
     Revert "COMP: VTK AUTOINIT redefinition warnings"
     COMP: VTK and ITK H5 build program collision
     COMP: Create out-of-line virtual method defintions
     COMP: Create out-of-line virtual method macros
     DOC: Clarify strange syntax for itk::MetaEvent
     COMP: Fix ENABLE_SHARED variable name
     STYLE: Remove outdated cmake version support
     STYLE: Move SymmetricEigenAnalysis to Deprecated
     COMP: Prefer modern CMake visibility settings
     STYLE: Use ITK_NOEXCEPTION macro
     ENH: Continue to deprecate ::Zero and ::One
     ENH: Avoid need for const_cast, ensure consistency
     BUG: Incorrect function signature
     COMP: Intel compiler warning suppression
     ENH: Add shared libraries for ITK libraries
     ENH: Remove unnecessary const_cast
     STYLE: Move utility TransformIOHelper to cxx file
     BUG: Missing ITKIOMINC_EXPORT on __Private()
     STYLE: Fixed AnalyzeObjectMap header guard style.
     COMP: Missing exports for templates
     ENH: Update MGHIO for consistency with ITK.
     BUG: Remove shared specifications from TransformIO

Ivan Setiawan (2):

     BUG: Fix initial ImageTrueMax to the most negative value.
     BUG: Test case to verify fix of ImageTrueMax in MattesMI.

Jan Bergmeier (1):

     DOC: Changed indices for steps in ExhaustiveOptimizer.

Jon Haitz Legarreta (10):

     ENH: New test for the BinaryStatisticsKeepNObjectsImageFilter
     ENH: New test for the itkLabelShapeKeepNObjectsImageFilter
     ENH: Add test for itkShapeRelabelImageFilter
     ENH: Add test for the itkLabelStatisticsKeepNObjectsImageFilter
     ENH: Add test for itkBinaryShapeKeepNObjectsImageFilter
     ENH: Add test for itkLabelStatisticsOpeningImageFilter
     DOC: Correct documentation typo.
     ENH: Increase code coverage for itkCustomColormapFunction
     ENH: Increase code coverage for itkCustomColormapFunction
     ENH: New test for the itkMetaGaussianConverter

Julien Jomier (1):

     BUG: Output pointer origin is not set causing a memory access error.

KWSys Robot (3):

     KWSys 2015-04-19 (4f39791b)
     KWSys 2015-05-12 (b1d560a0)
     KWSys 2015-05-18 (9a6b7c3f)

Kevin H. Hobbs (1):

     COMP: new baseline for building against VTK master

Marius Staring (2):

     BUG: workaround for 64bit VS2013 Release segfaults
     COMP: workaround for 64bit VS2013 Release ICE

Matthew McCormick (160):

     ENH: Add BridgeNumPy Remote Module.
     COMP: Bump AnalyzeObjectMapIO to fix doxygen warning.
     STYLE: Style changes for itkGaussianDerivativeImageFunctionTest.
     ENH: Test GaussianDerivativeImageFunction with unsigned short.
     ENH: Bump CMakeLists.txt version to 4.8.0.
     DOC: Add C++11 macros to doxygen configuration.
     ENH: Remove FindNUMARRAY.cmake.
     STYLE: Too many spaces before semi-colon in PCAShapeSignedDistanceFunction.
     COMP: Bump Wiki Examples revision to fix Doxygen warnings.
     COMP: Fix ITK_OVERRIDE update DebugMacro build errors.
     DOC: Updates to GettingStarted.txt.
     BUG: Remove Testing/Temporary/CTestCostData.txt.
     ENH: Update doxygen.config for Doxygen 1.8.9.1.
     ENH: Bump release branch version to 4.7.1.
     ENH: Bump CMakeLists.txt version to 4.8.0.
     BUG: Clear TransformIO's list of transforms in TransformFileReader.
     DOC: Rename duplicate doxygen section.
     Revert Doxygen version 1.8.9.1 to 1.8.5 config to clean up dashboard
     DOC: Fix Doxygen override, nullptr, noexcept definitions.
     DOC: Note that push access is not required to get patches merged.
     COMP: Fix wrapping runtime warning on unknown itk::Matrix.
     COMP: Add missing types for MeshTraits wrapping.
     COMP: Do not wrap the Container types for CellInterface * types.
     COMP: Add wrapping for CellTraitsInfo.
     COMP: Wrap missing Mesh templates.
     DOC: Clean up some wrapping comments.
     ENH: Add wrapping for ITKImageNoise module.
     STYLE: Clean up inter-definition space for Image,ImageBase,ProcessObject.
     ENH: Fetch source tarball external data from midas3.kitware.com.
     BUG: Fix BridgeNumPy signed / unsigned short correspondance.
     DOC: Improve ImageScanlineIterator documentation.
     ENH: Add missing {Set,Get}Element methods to Array2D.
     BUG: Fix linking SmoothingRecursiveYvvGaussianFilter with install tree.
     BUG: Add CMake export code for ITK_USE_SYSTEM_GDCM.
     ENH: Pass CMAKE_GENERATOR to ExternalProject's.
     ENH: Update LLVM/Clang ExternalProject to 3.6.0.
     ENH: Update MetaIO License from Upstream.
     ENH: Bump MetaIO to latest upstream.
     BUG: Export ITK_FFTW_INCLUDE_PATH as CMake path.
     COMP: Do not include tests/ directory in clang tarball.
     ENH: Add Azure Storage as ExternalData source.
     STYLE: Update SplitComponents module for KWStyle fixes.
     COMP: Fix LevelSetsv4 tests with libc++.
     STYLE: Style fixes for LevelSetsv4 and related classes.
     BUG: Move MagnitudeAndPhaseToComplex filter wrapping to ITKImageIntensity.
     ENH: Document testModules.sh and move to Utilities/Maintenance
     BUG: Fix Python tests on Windows with Ninja generator.
     STYLE: Update IOSTL module for KWStyle test.
     BUG: Set ITK_BUILD_SHARED in ITKConfig.cmake on Windows.
     BUG: Suppress wrapping type conversions warnings with MSVC.
     COMP: Address quoted MSVC variable in GDCM.
     BUG: WrapITK.pth should contain the lib/ directory with VS.
     COMP: Suppress swig build configure warning.
     ENH: Use CMAKE_CROSSCOMPILING_EMULATOR to run HDF5 detection.
     BUG: Do not use EXECUTABLE_OUTPUT_PATH for vcl tests.
     BUG: Do not enable floating point exceptions in tests with MinGW.
     DOC: Update KWStyle location.
     BUG: Add QuickViewTest baseline for Mac.
     ENH: MetaIO use UpdateThirdPartyFromUpstream.sh
     ENH: Arrange MetaIO sources for UpdateThirdPartyFromUpstream.sh.
     ENH: Add root snapshot commit support to UpdateThirdPartyFromUpstream.sh
     COMP: Do not try to generate tiff_fax3sm.c when cross compiling.
     COMP: Android does not currently have posix_memalign.
     COMP: The Android pwd.h passwd struct does not have a pw_gecos entry.
     COMP: Android does not have pthread_setcancelstate.
     COMP: Do not do __errno_location workaround on Android.
     COMP: Removed unused parameters in itkThreadPoolTest.
     BUG: Address detection of TransformReadWriteTest as executable.
     ENH: Set CMP0056 to NEW.
     COMP: Work around test file too big with x64_64-w64-mingw32.
     COMP: Increase itkMattesMutualInformationImageToIMageMetricv4Test tolerance.
     COMP: Address NumericTraits warning related to POWER8 char.
     BUG: Add new ResampleImageFilter9Test baseline for MinGW.
     BUG: Add MinGW baseline for VoronoiPartitioningImageFilterTest1.
     COMP: Fix vnl_sample.cxx for srand48 but no drand48.
     ENH: Add ITK_DYNAMIC_LOADING CMake option.
     COMP: Support S_IRUSR and S_IWUSR.
     COMP: Do not log swig configure output.
     BUG: NumericTraits< char > does not have Self typedef.
     ENH: Do not use TestBigEndian from CMAKE_ROOT.
     COMP: Use sizeof(void *) instead of sizeof(size_t) for address model.
     COMP: Do not use GCC demangling with emscripten.
     ENH: Use try_run to determine if double correction required.
     COMP: Address quoted MSVC variable in GDCM.
     COMP: Suppress Swig configure output.
     COMP: Remove duplicate InternalLabelType typedef.
     COMP: Set CMP0058 to NEW.
     COMP: Add missing InternalLabelType.
     BUG: Specify absolute path to double-conversion-configure.h for install.
     DOC: Clarify the UpdateThirdPartyFromUpstream.sh commit message.
     BUG: Link to VTK 6 rendering backend modules.
     COMP: Pass --quiet to swig's configure script.
     STYLE: Update HigherOrderAccurateGradient module for style fixes.
     ENH: Mark ITK_DYNAMIC_LOADING as an advanced CMake variable.
     COMP: Ignore swig-prefix warnings.
     BUG: GDCM set default ultrasound spacing when not found.
     COMP: Initialize arrays in itkCurvatureFlowFunction.
     BUG: Add VTK modules for annotation rendering.
     BUG: Link vtkRenderingFreeType in the VTK modules.
     COMP: Add itkIntTypes.h header for SizeValueType in itkVnlFFTCommon.h
     STYLE: Style fixes for RayCastHelper::CalcRayIntercepts
     COMP: Run the SWIG configure step in a CMake script.
     ENH: Bump release branch version to 4.7.2.
     STYLE: Bump IOFDF module for style and cleanup.
     BUG: Fix DoxygenInGroup test from .zip release files.
     COMP: Do not wrap exotic QuadEdgeMesh CellInterface types.
     COMP: Remove FFTWGlobalConfiguration param doxygen keyword.
     COMP: Do not reference ::MetaEvent in itkMetaEvent.h docs.
     DOC: itkSymmetricEigenSystem is now in the ITKDeprecated module.
     BUG: Fix TestDriver executable for itkSymmetricEigenSystemTest.
     BUG: Use consistent SizeGreatestPrimeFactor in deconvolution tests.
     COMP: Use signed char in ImageToImageMetricv4 test.
     COMP: Do not include itkDynamicLoader in header tests.
     COMP: Include byteswap.h for Android in GDCM.
     COMP: Use signal.h instead of sys/signal.h in GDCM.
     COMP: Not all versions of Android have posix_memalign.
     COMP: Initialize variable in PointSetToListSampleAdaptorTest.
     COMP: Suppress getpwnam warning with static executables.
     COMP: Tighten LandmarkWarping2 lines for Software Guide.
     ENH: Allow skip of FloatPointExceptions implementation for absent fenv.h.
     COMP: Define feenableexcept for Emscripten.
     BUG: HDF5 do not force CMake CheckTypeSize on include.
     STYLE: Style fixes to itkVideoStream.e
     COMP: Ignore build warnings for libs unfound by emscripten.
     BUG: Run HDF5 H5detect in working directory with the executable.
     BUG: HDF5 use CMAKE_EXECUTABLE_SUFFIX.
     COMP: Work around Emscripten internal compiler crash in VideoStream.
     COMP: Use byteswap.h with GDCM with Emscripten.
     COMP: Recognize Emscripten in socket++.
     BUG: Remove HDF5's own internal CheckTypeSize.cmake.
     ENH: Enable cross-compiling of the wrapping.
     COMP: Missing semi-colon in FFT Hermitian filters.
     ENH: Add ExternalData_NO_SYMLINKS option.
     ENH: Mount local filesystem in the test driver for Emscripten.
     BUG: Do not install wrapping with CMAKE_PREFIX_PATH.
     ENH: Define CPACK_PACKAGE_CONTACT.
     ENH: Add post-commit hook for third party library patches.
     ENH: Pass the CastXML flags directly.
     STYLE: Rename GCC-XML references to CastXML.
     ENH: Send an error when CMAKE_CXX_COMPILER_TARGET is not set.
     ENH: Bump CastXML version for cross-compiling target fix.
     BUG: Use STRING type for PY_SITE_PACKAGES_PATH.
     BUG: Continue when IPython.get_ipython throws an AttributeError.
     ENH: Add ITK_USE_SYSTEM_LIBRARIES
     STYLE: Fix indentation in ITKSetStandardCompilerFlags.cmake.
     COMP: Do not enable ITK_HAVE_SYNC_BUILTINS with Emscripten.
     COMP: Fix MinGW ITK_HAVE_SYNC_BUILTINS detection.
     ENH: Split testing data tarball form source tarball.
     COMP: Do not use ITK_NULLPTR as sentinel.
     ENH: Use gold linker on Linux with GCC.
     COMP: Add try_compile check for gold linker.
     COMP: Do not build dsrc2c.c with -fvisibility-inlines-hidden.
     BUG: Remove shared specifications from IOTransformBase.
     BUG: Required GCC version for gold linker is 4.8.3.
     BUG: Fix ITKIOMINCExport.h capitalization.
     BUG: Add missing include directory required after MINC update.
     BUG: Bring in IOFDF license updates.
     COMP: Add missing HDF5 include for MINC.
     COMP: Add missing HDF5 include directory for ITKIOMINC.
     COMP: Fix itkVTKImageExport.h header name in VtkGlue.i.

MetaIO Maintainers (2):

     MetaIO 2015-04-12 (b7969294)
     MetaIO 2015-04-21 (dc4f7d16)

Michka Popoff (20):

     COMP: Use c++ style comments in pyBase.i
     ENH: Update to swig 3.0.3
     STYLE: Cleanup up cmake files (if, endif, foreach, endforeach).
     ENH: Update to SWIG 3.0.5
     COMP: Fix PythonReadDicomTagTest on OS X
     ENH: Improve wrapping for Vector image types
     ENH: Cleanup itkComposeImageFilter wrapping
     ENH: Setup correct wrapping of GradientRecursiveGaussianImageFilter
     ENH: Add Get/SetSigmaArray to GradientRecursiveGaussianImageFilter
     ENH: Add checks for base types when wrapping more complex types
     COMP: Fix DiffeomorphicDemonsRegistration Wrapping
     STYLE: Rename ITK_WRAP_DIMS to ITK_WRAP_IMAGE_DIMS
     ENH: Add ITK_WRAP_VECTOR_COMPONENTS option
     STYLE: Replace GCCXML by CASTXML
     BUG: Wrap FixedArray sizes also for vector components
     ENH: Wrap MersenneTwisterRandomVariateGenerator
     ENH: Wrap CustomColormapFunction
     ENH: Update to PCRE 8.37
     ENH: Enable wrapping of 4 dimensional vectors
     ENH: Remove inline namespace fix for Wrapping

Nick Tustison (10):

     ENH:  Adding point set reg. capabilities for SyN.
     PERF:  Tolerance for testing needs to be increased.
     BUG:  Coverity divide by zero complaint.
     BUG:  Metric evaluation had an incorrect sign.
     ENH:  Making the point set type visible.
     BUG:  Need to check if maxNorm == 0.
     BUG:  Pixel type shouldn't be initialized with scalar.
     ENH:  Cleaning up point set reg. in BSplineSyN
     ENH:  Adding tangent space calculation for SyN methods.
     BUG:  Added sampling only within the specified mask.

Niels Dekker (2):

     BUG: workaround for 64bit VS2013 Release segfault
     COMP: Fixed MSVC warnings, "warning D9025: overriding '/W1' with '/w'"

Richard Beare (3):

     ENH: LabelErodeDilate as a remote module
     ENH: remote.cmake for parabolic morphology
     ENH: Use SHA for LabelErodeDilate module.

Rolf Eike Beer (2):

     STYLE: ExternalData: Replace MATCHES with STREQUAL where possible
     STYLE: ExternalData: Clean up duplicate regex matches with CMAKE_MATCH_<n>

Sean McBride (12):

     COMP: Changed KWStyle check for header include guard names
     COMP: Remove double underscore in header guards (.h & __itk*_h form)
     COMP: Remove double underscore in header guards (.hxx & __itk*_h form)
     COMP: Remove double underscore in header guards (.in & __itk*_h form)
     COMP: Remove remaining double underscore in header guards (__itk form)
     COMP: Remove unnecessary header guards in .cxx files
     COMP: Manually search for "__itk" and clean up double underscore usage
     COMP: fixed clang -Wkeyword-macro warning by removing invalid #undef
     COMP: Suppress clang -Wdocumentation-unknown-command false positive
     COMP: properly escape @ char in doxygen comments
     COMP: Escaped @ character in doxygen comments
     BUG: updated libminc SHA to newest

Ziv Yaniv (1):

     BUG: Versor initialized with null axis (0,0,0) did not throw exception.


ITK Sphinx Examples Changelog


Arnaud Gelas (9):

     DOC: recommend to use CreateNewExample.py
     ENH: Add one example for BinaryFillholeImageFilter
     add one example to illustrate the usage of LabelSelectionLabelMapFilter
     Apply BinaryMorphologicalClosingFilter on all LabelObjects of given LabelMap
     Add one example to apply morphological closing on specific LabelObject
     fix rst formatting
     Add one example to overlay one label map on top of one image
     Minor fixes in page title
     COMP: Fix sphinx warning (missing '.' for one title)

Bradley Lowekamp (1):

     BUG: Fix ITK_WRAP_PYTHON check

Dženan Zukić (1):

     Adding DicomSeriesReadImageWrite3

Matt McCormick (11):

     ENH: Add option to build Python wrapping in the superbuild.
     COMP: Remove "ImageFilter" from ApplyGradientRecursiveGaussian.
     COMP: Set CMP0054 to NEW.
     BUG: Fix links to Midas community.
     ENH: Send an error when the source/build path is too long on Windows.
     BUG: Extend the superbuild path limit.
     BUG: Add ITKMetaIO to ComputePeronaMalikAnisotropicDiffusion to create output.
     ENH: Update VTK version to 6.2.0.
     COMP: Do not log ExternalProject steps that generate false positives.
     COMP: Remove unused variables and types.
     ENH: Bump ITK ExternalProject to v4.8.0.

Michka Popoff (19):

     ENH: Add GradientRecursiveGaussianImageFilter example
     COMP: Fix failing ApplyGradientRecursiveGaussianImageFilter tests
     DOC: Fix GradientRecursiveGaussianImageFilter documentation
     COMP: Fix missing images in ApplyGradientRecursiveGaussianFilter
     ENH: Add new example with GradientRecursiveGaussianImageFilter
     BUG: Correctly detect and set python_file
     ENH: Add Python code to RemoveHolesNotConnectedToImageBoundaries
     STYLE: Remove example_name and folder variables
     STYLE: Pep8 cleanup for CreateNewExample.py.in
     ENH: Improve CreateNewExample script
     ENH: ADD ComputePeronaMalikAnisotropicDiffusion Python Example
     ENH: Add Anti Alias Python Example
     ENH: Add tests for Python examples in AnisotropicSmoothing
     BUG: Fix PeronaMalik python example
     ENH: Add ApplyColorMap Python example
     ENH: Simplify CMakeLists Python setup
     ENH: Add custom colormap Python example
     ENH: Improve Python SuperBuild
     ENH: Replace double with float in python examples


ITK Software Guide Changelog


  • Note that improvements in the Examples/ directory of the ITK repository also contribute to the improvements in the Software Guide.

Davis Vigneault (1):

     DOC: Fix typo's in SystemOverview and DataRepresentation.

Matt McCormick (9):

     ENH: Update the MetaIO license file location.
     ENH: Add option to build HTML output with tex4ht.
     ENH: Remove the 000- and 001- prefixes to the main .tex files.
     ENH: Add CMake option to turn off the draft watermark.
     ENH: Add some styling to the HTML index.
     DOC: Update Python wrapping information.
     BUG: Fixes to How To Write A Filter.
     ENH: Bump ITK ExternalProject to July 01, 2015.
     COMP: Address missing bracket and backslash escapes.



ITK Apps Changelog



Matt McCormick (2):

     COMP: Fix @only capitalization in External-FLTK.cmake.
     ENH: Bump ITK Superbuild version to 4.8.0.