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Description: Computes an atlas from a set of subject-specific files.


  ./AtlasBuilderUsingIntensity  [--returnparameterfile <std::string>]
                                <std::string>] [--xml] [--echo]
                                [--outputSpacing <std::vector<int>>]
                                [--outputSize <std::vector<double>>]
                                [--lowerThreshold <int>]
                                [--outputCountImage <std::string>] [--]
                                [--version] [-h] <std::string>
                                <std::string> <std::string>


  --returnparameterfile <std::string>
    Filename in which to write simple return parameters (int, float,
    int-vector, etc.) as opposed to bulk return parameters (image,
    geometry, transform, measurement, table).
  --processinformationaddress <std::string>
    Address of a structure to store process information (progress, abort,
    etc.). (default: 0)
    Produce xml description of command line arguments (default: 0)
    Echo the command line arguments (default: 0)
  --outputSpacing <std::vector<int>>
    Output image spacing. Default is the initial image spacing.
  --outputSize <std::vector<double>>
    Output image size (X,Y,Z). Cannot use with --doImageSizeAdjustment.
  --lowerThreshold <int>
    Minimum number of contributing images for pixel to be counted in
    output. (default: 4)
    Is the sigma image standard deviation? (default: 0)
    Adjust the mean origin to the input images. (default: 0)
    Adjust the mean size to the input images. (default: 0)
  --outputCountImage <std::string>
    Filename to save the count image.
  --,  --ignore_rest
    Ignores the rest of the labeled arguments following this flag.
    Displays version information and exits.
  -h,  --help
    Displays usage information and exits.
    (required)  Object document with Euclidean distance map information.
    (required)  Output (mean) atlas computed from subject-specific files.
    (required)  Output (variance) atlas computed from subject-specific

  Author(s): Stephen R. Aylward, Roland Kwitt (Kitware)
  Acknowledgements: This work is part of the TubeTK project at Kitware.