TubeTK/Slicer

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TubeTK in 3D Slicer Please use Slicer4 Note that there are different instructions for users and developers For now, TubeTK must be built from source: See the TubeTK developers page for instructions to build and extend TubeTK Users: Download a pre-compiled version of Slicer Developers: Build Slicer from source Users Download 3D Slicer Download from http://download.slicer.org/ Choose your operating system: Windows, Mac OS X, Linux Choose stable release or nightly build Add TubeTK's Command Line Modules Run Slicer Edit -> Application Settings -> Additional module paths (click >> to the right of the box, then the Add button) Select <YourTubeTKBuildDirectory>/TubeTK-Build/lib/TubeTK/Plugins/ Restart 3D Slicer On restart, the TubeTK modules will now be in the list of modules. All TubeTK module names end with (TubeTK) Developers Build 3D Slicer Build Slicer4 according to the Slicer4 Build Instructions Add TubeTK's Command Line Modules Copy the TubeTK plugins to Slicer's plugins directory. TubeTK plugins include the substring 'tube': cp <YourTubeTKBuildDirectory>/TubeTK-Build/lib/TubeTK/Plugins/*tube* <YourSlicerBuildDirectory>/Slicer-build/lib/Slicer3/Plugins Add TubeTK's Slicer python modules Copy all of TubeTK's slicer python modules to Slicer's QTScriptableModules directory: cp <YourTubeTKSourceDirectory>/Applications/SlicerModules/*.py <YourSlicerSourceDirectory>/QTScriptedModules/Scripts Add TubeTK's slicer python modules to the list in <YourSlicerSourceDirectory>/QTScriptedModules/Scripts/CMakeLists.txt Re-build Slicer Run 3D Slicer cd <YourSlicerBuildDirectory>/Slicer-build ./Slicer The TubeTK modules will now be in the list of modules