[Insight-developers] SGI Execution Problems
Hans Johnson
hans-johnson@uiowa.edu
Fri, 14 Feb 2003 18:17:10 -0600
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ITK Build Experts,
I am attempting to build and test Insight on an SGI (IRIX 6.5.13m) for
nightly regression testing. All of the test executables are causing
segmentation faults and failing. I have it compiling without errors,
but when the executables are run, they seg fault on std::cout commands.
The following is an example from the itkModifiedTimeTest.cxx test:
line 32 std::cout<<"BB time before modification: "<< bbBeforeTime
<<std::endl;
causes a segmentation fault:
Here is the stack trace:
std::basic_ios<char,std::char_traits<char> >::rdbuf,
FP=7fff2bd0
std::basic_ostream<char,std::char_traits<char> >::sentry::sentry,
FP=7fff2c30
std::basic_ostream<char,std::char_traits<char> >::_M_put_nowiden,
FP=7fff2d10
std::operator<<, FP=7fff2d30
itkModifiedTimeTest, FP=7fff2e20
main, FP=7fff2ec0
__start, FP=7fff2ed0
In addition, I have added the CMakeCache.txt file so that you can see
the compiler options used.
I have used these C++ compiler flags for the last 3 years with other
projects, and they have never displayed this behavior. In addition, I
have done this test on two separate computers. Any help would be
greatly appreciated.
=======================================================================
Distilled test:
cat xx.cxx
#include <iostream>
int main(int , char **)
{
std::cout << "Hello World" << std::endl;
return 0;
}
Used gmake -n to determine compile time options used for ITK and
transferred to a compile script:
1) TEST 0
cat newtest.sh
CC -L/home/scratch/hjohnson/Testing/SGI/DEBUG/lib -L/usr/freeware/lib32
-n32 -g -DUDEBUG -xansi -LANG:std -LANG:ansi-for-init-scope=ON -fullwarn
-woff 1110,1424,1468,1375,1209 -LANG:std -D_PTHREADS xx.cxx -o xx.exe
-lpthread -lm -lVXLNumerics -lm -lITKCommon -lm -lVXLNumerics -lpthread
-lm -Wl,-rpath,/home/scratch/hjohnson/Testing/SGI/DEBUG/lib
RESULT: ./xx.exe
Segmentation fault (core dumped)
2) TEST 1
CC -n32 -g -DUDEBUG -xansi -LANG:std -LANG:ansi-for-init-scope=ON
-fullwarn -woff 1110,1424,1468,1375,1209 -LANG:std -D_PTHREADS xx.cxx -o
xx.exe -Wl,-rpath,/home/scratch/hjohnson/Testing/SGI/DEBUG/lib
RESULT: ./xx.exe
Hello World
Bus error (core dumped)
3) TEST 2
CC -n32 -g -DUDEBUG -xansi -LANG:std -LANG:ansi-for-init-scope=ON
-fullwarn -woff 1110,1424,1468,1375,1209 xx.cxx -o xx.exe
-Wl,-rpath,/home/scratch/hjohnson/Testing/SGI/DEBUG/lib
RESULT: ./xx.exe
Hello World
========================================================================
It looks like the -D_PTHREADS is causing the problems, but I don't know
where it was set.
Thanks,
Hans
===================================================================
Hans J. Johnson W294 GH
hans-johnson@uiowa.edu Dept. of Psychiatry
http://www.psychiatry.uiowa.edu/~hjohnson The University of Iowa
(319) 353-8587 Iowa City, IA 52242
===================================================================
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# If you do not want to change any of the values, simply exit the editor.
# If you do want to change a value, simply edit, save, and exit the editor.
# The syntax for the file is as follows:
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# VALUE is the current value for the KEY.
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//Advanced flag for variable: CMAKE_X_CFLAGS
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//Advanced flag for variable: CMAKE_X_LIBS
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//Advanced flag for variable: COMPRESSIONCOMMAND
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CVSCOMMAND-ADVANCED:INTERNAL=1
//Advanced flag for variable: CVS_UPDATE_OPTIONS
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//Advanced flag for variable: DART_TESTING_TIMEOUT
DART_TESTING_TIMEOUT-ADVANCED:INTERNAL=1
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DICOMParser_CMAKE_PATH:INTERNAL=/usr/oleary/scratch/hjohnson/Testing/SGI/DEBUG/Insight/Utilities/DICOMParser
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//Advanced flag for variable: EXECUTABLE_OUTPUT_PATH
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//Result of TRY_COMPILE
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//Whether a library is static, shared or module.
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itkAlgorithmsHeaderTest_CMAKE_PATH:INTERNAL=/usr/oleary/scratch/hjohnson/Testing/SGI/DEBUG/Insight/Testing/Code/Algorithms
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itkAlgorithmsTests_CMAKE_PATH:INTERNAL=/usr/oleary/scratch/hjohnson/Testing/SGI/DEBUG/Insight/Testing/Code/Algorithms
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itkBasicFiltersHeaderTest_CMAKE_PATH:INTERNAL=/usr/oleary/scratch/hjohnson/Testing/SGI/DEBUG/Insight/Testing/Code/BasicFilters
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itkBasicFiltersTests_CMAKE_PATH:INTERNAL=/usr/oleary/scratch/hjohnson/Testing/SGI/DEBUG/Insight/Testing/Code/BasicFilters
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itkCommonHeaderTest_CMAKE_PATH:INTERNAL=/usr/oleary/scratch/hjohnson/Testing/SGI/DEBUG/Insight/Testing/Code/Common
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itkCommonTests_CMAKE_PATH:INTERNAL=/usr/oleary/scratch/hjohnson/Testing/SGI/DEBUG/Insight/Testing/Code/Common
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itkFEMTests_CMAKE_PATH:INTERNAL=/usr/oleary/scratch/hjohnson/Testing/SGI/DEBUG/Insight/Testing/Code/Numerics/FEM
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itkIOHeaderTest_CMAKE_PATH:INTERNAL=/usr/oleary/scratch/hjohnson/Testing/SGI/DEBUG/Insight/Testing/Code/IO
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itkIOTests_CMAKE_PATH:INTERNAL=/usr/oleary/scratch/hjohnson/Testing/SGI/DEBUG/Insight/Testing/Code/IO
//Path to an executable
itkNumericsHeaderTest_CMAKE_PATH:INTERNAL=/usr/oleary/scratch/hjohnson/Testing/SGI/DEBUG/Insight/Testing/Code/Numerics
//Path to an executable
itkNumericsTests_CMAKE_PATH:INTERNAL=/usr/oleary/scratch/hjohnson/Testing/SGI/DEBUG/Insight/Testing/Code/Numerics
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itkSpatialObjectHeaderTest_CMAKE_PATH:INTERNAL=/usr/oleary/scratch/hjohnson/Testing/SGI/DEBUG/Insight/Testing/Code/SpatialObject
//Path to an executable
itkSpatialObjectTests_CMAKE_PATH:INTERNAL=/usr/oleary/scratch/hjohnson/Testing/SGI/DEBUG/Insight/Testing/Code/SpatialObject
//Path to an executable
itkStatisticsTests_CMAKE_PATH:INTERNAL=/usr/oleary/scratch/hjohnson/Testing/SGI/DEBUG/Insight/Testing/Code/Numerics/Statistics
//Path to a library
itkpng_CMAKE_PATH:INTERNAL=/usr/oleary/scratch/hjohnson/Testing/SGI/DEBUG/Insight/Utilities/png
//Whether a library is static, shared or module.
itkpng_LIBRARY_TYPE:INTERNAL=STATIC
//Path to a library
itkzlib_CMAKE_PATH:INTERNAL=/usr/oleary/scratch/hjohnson/Testing/SGI/DEBUG/Insight/Utilities/zlib
//Whether a library is static, shared or module.
itkzlib_LIBRARY_TYPE:INTERNAL=STATIC
//Path to an executable
vnlTests2_CMAKE_PATH:INTERNAL=/usr/oleary/scratch/hjohnson/Testing/SGI/DEBUG/Insight/Testing/Code/Numerics/vxl/vnl/tests
//Path to an executable
vnlTests_CMAKE_PATH:INTERNAL=/usr/oleary/scratch/hjohnson/Testing/SGI/DEBUG/Insight/Testing/Code/Numerics/vxl/vnl/tests
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