[Insight-developers] [slicer-devel] ITK 3 tag to use with slicer? Fwd: Slicer release schedule

Sun Jul 17 08:46:42 EDT 2011

Hi Bill,

This one would also quite important (necessary for slice-to-volume
registration Slicer): http://www.itk.org/Bug/view.php?id=11699. You merged
the fix into ITK4 in January (http://review.source.kitware.com/#change,729)
but it's not in ITK-3.20.

Andras

-----Original Message-----
From: slicer-devel-bounces at bwh.harvard.edu
[mailto:slicer-devel-bounces at bwh.harvard.edu] On Behalf Of Bill Lorensen
Sent: 2011-July-16 5:01 PM
To: Johnson, Hans J
Cc: Slicer Development; ITK
Subject: Re: [slicer-devel] [Insight-developers] ITK 3 tag to use with
slicer? Fwd: Slicer release schedule

Steve (and all),

Are there other [atches to the Slicer ITK 3.20 clone that we should
also look at for inclusion in the official 3.20 branch?

Bill

On Sat, Jul 16, 2011 at 4:57 PM, Johnson, Hans J <hans-johnson at uiowa.edu>
wrote:
> I already have the patches.  It's only 3 lines of code. I was going to
> work on it tomorrow and post to gerrit.
>
> I'm currently trying to find a gcc 4.6 system to test with.
>
>
> Hans
>
>
> On 7/16/11 3:44 PM, "Bill Lorensen" <bill.lorensen at gmail.com> wrote:
>
>>JC,
>>
>>If you provide a git patchs we can apply it to the itk 3.20 release.
>>
>>Using:
>>git format-patch -M
>>
>>Bill
>>
>>On Thu, Jul 14, 2011 at 5:09 PM, Jean-Christophe Fillion-Robin
>><jchris.fillionr at kitware.com> wrote:
>>> Hi Folks,
>>>
>>> Looking at the history of Slicer/ITK branch "slicer-4.0", you will
>>>notice
>>> that commits have integrated so that it compiles:
>>>
>>>   1) on 64bits windows
>>>
>>> Merge branch 'fix-vnl-64bits-compile' into slicer-4.0
>>>
>>> * fix-vnl-64bits-compile:
>>>   Review DETERMINE_TYPE vxl macro
>>>   Add VXL_SIZEOF_SIZE_T test
>>>   Add VXL_HAS_WIN_WCHAR_T test
>>>
>>>
>>>   Update VXL_HAS_TYPE_OF_SIZE test
>>>
>>> See
>>>
>>>https://github.com/Slicer/ITK/commit/71e4277a785ae0f14c5c1cd2a8df1a70d99f
>>>1052
>>>
>>>   2) on unix-like system using gcc-4.6
>>>
>>> Merge branch 'fix-gcc46-compile' into slicer-4.0
>>>
>>> * fix-gcc46-compile:
>>>   COMP: Add missing include <stddef.h> for ptrdiff_t
>>>   COMP: Add missing include <stddef.h> for ptrdiff_t
>>>
>>> See
>>>
>>>https://github.com/Slicer/ITK/commit/309a4221146ee34ee87cd4a3fc0cae26bd75
>>>35c4
>>>
>>>
>>> It shouldn't be to hard to patch the version of ITK your are currently
>>>using
>>> for Slicer3.
>>>
>>> Any question, please let me know.
>>> Thanks
>>> Jc
>>>
>>>
>>> On Thu, Jul 14, 2011 at 4:05 PM, Stephen Aylward
>>> <stephen.aylward at kitware.com> wrote:
>>>>
>>>> Hi Steve,
>>>>
>>>> I am CC'ing J2 and JC.
>>>>
>>>> JC, in particular, did a huge amount of work to get ITK-Slicer to
>>>> compile for 64bits.  We should not change versions without involving
>>>> him.
>>>>
>>>> s
>>>>
>>>> On Thu, Jul 14, 2011 at 1:57 PM, Steve Pieper <pieper at ibility.net>
>>>>wrote:
>>>> > Hi Hans, Bill, Stephen Luis -
>>>> >
>>>> > Is there a version of ITK 3 that compiles on the gcc-4.6 compiler?
>>>>I'm
>>>> > not
>>>> > on the itk-devel list so I can't follow the link in Dominique's
>>>>email,
>>>> > but I
>>>> > guess there's been some discussion of it.  (Bill - this is the
>>>>question
>>>> > I
>>>> > mentioned the other day on the phone).
>>>> >
>>>> > What I'm looking for is a version of ITK to make the default for the
>>>> > current
>>>> > slicer3 trunk so that it will build on the latest compilers.  Also
>>>>we'll
>>>> > want to use that version for slicer4 currently, with the ideas that
>>>> > we'll
>>>> > eventually want to swap over to ITK 4.x when it settles down.
>>>> >
>>>> > Thanks,
>>>> > Steve
>>>> >
>>>> >
>>>> > ---------- Forwarded message ----------
>>>> > From: Dominique Belhachemi <domibel at debian.org>
>>>> > Date: Thu, Jul 14, 2011 at 11:31 AM
>>>> > Subject: Re: Slicer release schedule
>>>> > To: pieper at bwh.harvard.edu
>>>> > Cc: Ron Kikinis <kikinis at bwh.harvard.edu>
>>>> >
>>>> >
>>>> > Hi Steve,
>>>> >
>>>> > I asked in May if they can do a new patch release. They patched their
>>>> > git release branch and I am waiting now...
>>>> >
>>>> >
>>>>http://www.itk.org/mailman/private/insight-developers/2011-May/018475.ht
>>>>ml
>>>> >
>>>> > BTW, This doesn't affect the Debian packages, it only affects people
>>>> > who compile Slicer3 from scratch on a Linux box with the current
>>>> > gcc-4.6 compiler.
>>>> >
>>>> > Thanks
>>>> > Dominique
>>>> >
>>>> >
>>>> > On Wed, Jul 13, 2011 at 5:15 PM, Steve Pieper <pieper at ibility.net>
>>>> > wrote:
>>>> >>
>>>> >> On Sun, Jul 10, 2011 at 7:18 PM, Dominique Belhachemi
>>>> >> <domibel at debian.org>
>>>> >>> ITK looks good. There are basically no changes to ITK 3.x. But for
>>>>the
>>>> >>> current Slicer3 release you have to ask for a new tag. Otherwise
>>>>user
>>>> >>> will run into gcc-4.6 compilation issues.
>>>> >>>
>>>> >>
>>>> >> For packaging we should be able to use the 3.20 release (I don't
>>>>recall
>>>> >> the
>>>> >> version issues - does 3.20 build on gcc 4.6?).  Or if that's the one
>>>> >> that
>>>> >> fails we can probably twist their arms to make a 3.22 version with
>>>>the
>>>> >> fix
>>>> >> for everyone.
>>>> >>
>>>> >
>>>> >
>>>>
>>>>
>>>>
>>>> --
>>>>
>>>> ==============================
>>>> Stephen R. Aylward, Ph.D.
>>>> Director of Medical Imaging Research
>>>> Kitware, Inc. - North Carolina Office
>>>> http://www.kitware.com
>>>> stephen.aylward (Skype)
>>>> (919) 969-6990 x300
>>>
>>>
>>>
>>> --
>>> +1 919 869 8849
>>>
>>>
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