[Insight-developers] SimpleITK dashboard

[Daniel Blezek]

OK, I installed mono-core and mono-devel.  Check the dashboard tomorrow to
see if all went well!

-dan


On 7/27/11 11:32 AM, "Dan Mueller" <dan.muel at gmail.com> wrote:

> Hi Dan,
> 
>>  If I install Mono, will SimpleITK automatically detect and configure?
> Yes, C# is considered a "first class" language -- if the packages are
> installed, CMake tries to find it in the following locations:
> 
>   # Search for Mono on non-Win32 systems
>   set( chsarp_mono_names "dmcs" "gmcs" "mcs" "dmcs.exe" "gmcs.exe" "mcs.exe" )
>   set(
>     csharp_mono_paths
>     "/usr/bin/"
>     "/usr/local/bin/"
>     "/usr/lib/mono/2.0"
>   )
>   find_program(
>     NAMES ${chsarp_mono_names}
>     PATHS ${csharp_mono_paths}
>   )
> 
> This has been tested on Ubuntu; not sure how it goes on other Linux flavors.
> 
> Regards, Dan Mueller
> 
> On 27 July 2011 18:22, Daniel Blezek <Blezek.Daniel at mayo.edu> wrote:
>> Hi Dan,
>> 
>>  If I install Mono, will SimpleITK automatically detect and configure?
>> 
>> Thanks,
>> -dan
>> 
>> 
>> On 7/27/11 7:30 AM, "Dan Mueller" <dan.muel at gmail.com> wrote:
>> 
>>> Hi John,
>>> 
>>> Submitting a SimpleITK build on CentOS with Mono C# would be great!
>>> 
>>> You can find details for installing Mono packages here:
>>>     http://www.mono-project.com/Mono_Installation
>>>     http://ftp.novell.com/pub/mono/download-stable/RHEL_5
>>> 
>>> http://stackoverflow.com/questions/3510320/install-mono-on-centos5-5-using-y
>>> um
>>> 
>>> Someone else will have to give instructions for submitting a SimpleITK
>>> build to the dashboard (David?, Dan B?). Perhaps the following wiki
>>> page can help get you started:
>>>     http://www.itk.org/Wiki/ITK_Policy_and_Procedure_for_Adding_Dashboards
>>> 
>>> Looking forward to seeing Linux + SimpleITK + C# builds on the dashboard!
>>> 
>>> Cheers, Dan Mueller
>>> 
>>> On 26 July 2011 18:04, John McInerney <jmcinerney6 at gmail.com> wrote:
>>>> Dear Dan,
>>>> 
>>>> I have a CentOS machine that I would love to try Mono for C# wrapping.  I
>>>> have 30 years of UNIX/Linux/etc.  Been doing CUDA for a while now.  I am
>>>> hoping Bioscan can just deliver a single machine with our instruments
>>>> that'll do
>>>> everything down stream from the embeded (headless) system: GUI,
>>>> reconstruction,
>>>> segmentation, and registration.  So, that's my motivation...
>>>> 
>>>> Been hanging on by my nails with the ITK upgrade.  Can't say I follow
>>>> everything,
>>>> but I'm a quick study.  I can do the Mono install.  It may take some time
>>>> to
>>>> get
>>>> ITK 4 going to get to where you are at...  I have code that ran under ITK
>>>> 3...
>>>> 
>>>> John
>>>> 
>>>> On Tue, Jul 26, 2011 at 10:42 AM, Dan Mueller <dan.muel at gmail.com> wrote:
>>>>> 
>>>>> Hi Brad,
>>>>> 
>>>>> The SimpleITK dashboard is looking good this morning :D (At least for
>>>>> Linux and Win32 builds.) Out of interest, what branch are these
>>>>> machines using? I am using remote stage/next, but still get the
>>>>> DIRECTIONCOLLAPSETOIDENTITY errors...
>>>>> 
>>>>> Also, are you in charge of the Linux box mi3c-qbert.mayo.edu? I'm just
>>>>> wondering if it would be possible to install Mono so that C# wrapping
>>>>> on Linux is covered (unfortunately I don't have access to a Linux
>>>>> machine for submitting builds at the moment). If you tell me the Linux
>>>>> flavour, I can provide the few commands needed to install the 2 or 3
>>>>> Mono-related packages.
>>>>> 
>>>>> Cheers, Dan Mueller
>>>>> 
>>>>> On 25 July 2011 15:49, Bradley Lowekamp <blowekamp at mail.nih.gov> wrote:
>>>>>> I agree that is starting to be concerning with the size of the library.
>>>>>> I am
>>>>>> still amazed with how much it shrinks when the wrapped language library
>>>>>> is
>>>>>> made. There should be something we can do about this.
>>>>>> That is great you found a solution. The attached diff is fine. I will
>>>>>> place
>>>>>> it onto the end of the current topic. And hopefully, it'll be ready for
>>>>>> merging into master!
>>>>>> Brad
>>>>>> 
>>>>>> On Jul 25, 2011, at 1:13 AM, Dan Mueller wrote:
>>>>>> 
>>>>>> Hi Brad,
>>>>>> 
>>>>>> Debug builds on windows 32-bit systems may not be supported. The library
>>>>>> just gets too big. You should try to build a release.
>>>>>> 
>>>>>> Thanks for the info regarding the release build -- I do not encounter
>>>>>> the "can not seek" error in release mode. However, I notice that
>>>>>> SimpleITKBasicFilters.lib comes to 700MB, which is getting close to
>>>>>> 1GB; perhaps something to watch for in the future as SimpleITK grows.
>>>>>> 
>>>>>> This morning I located the issue with the SimpleITK C# Visual Studio
>>>>>> 2008 build: it seems VS9 can not handle source dependencies specified
>>>>>> using a wildcard. I have changed
>>>>>> Wrapping/CSharpModules/UseCSharp.cmake to glob any wildcard
>>>>>> expressions (as well as a minor bug fix for FindCSharp when using
>>>>>> outside of SimpleITK). I have tested the changes using VS9, VS10, and
>>>>>> make on Unbuntu. Please find the corrected files attached and diff
>>>>>> below. What is your preferred way of working? Do I push the patch to
>>>>>> Gerrit?
>>>>>> 
>>>>>> Cheers, Dan Mueller
>> 
>> --
>> Daniel Blezek, PhD
>> Medical Imaging Informatics Innovation Center
>> 
>> P 127 or (77) 8 8886
>> T 507 538 8886
>> E blezek.daniel at mayo.edu
>> 
>> Mayo Clinic
>> 200 First St. S.W.
>> Harwick SL-44
>> Rochester, MN 55905
>> mayoclinic.org
>> "It is more complicated than you think." -- RFC 1925
>> 
>> 

-- 
Daniel Blezek, PhD
Medical Imaging Informatics Innovation Center

P 127 or (77) 8 8886
T 507 538 8886
E blezek.daniel at mayo.edu

Mayo Clinic
200 First St. S.W.
Harwick SL-44
Rochester, MN 55905
mayoclinic.org
"It is more complicated than you think." -- RFC 1925