[Insight-developers] New process for adding data

Fri Jun 24 17:03:45 EDT 2011

Would it be possible to make the -all target depend on ITKData?

I was trying to verify Bill's change by simply running

   make -j8 ITK-ItkVtkGlue-all

but it was failing with the message at the end of this mail.

   make ITKData

fixed that, but it would be better to make it fully idiot proof.

Gaëtan

   [glehmann at marvin build]$ make -j8 ITK-ItkVtkGlue-all
[  0%] Built target itkv3p_lsqr
[  2%] [  2%] [  2%] Built target H5make_libsettings
Built target itkzlib
Built target H5detect
[  4%] Built target itksys
[  6%] Built target itkvcl
[  8%] Built target gdcmCommon
[  8%] Built target gdcmuuid
[ 10%] Built target itkopenjpeg
[ 10%] Built target ITKEXPAT
[ 10%] Built target ITKznz
[ 12%] [ 12%] Built target itkjpeg
[ 19%] [ 19%] Built target ITKMetaIO
[ 23%] Built target gdcmjpeg12
Built target gdcmjpeg8
Built target gdcmjpeg16
[ 27%] Built target ITKNrrdIO
[ 27%] Built target itkpng
[ 27%] [ 27%] Built target itkmkg3states
[ 27%] Generating /home/glehmann/src/ITK/build/ExternalData/Modules/ 
Bridge/ItkVtkGlue/test/Baseline/QuickViewTest0.png
Generating /home/glehmann/src/ITK/build/ExternalData/Modules/Bridge/ 
ItkVtkGlue/test/Baseline/QuickViewTest.png
[ 27%] Built target ITKniftiio
-- Fetching "file:////home/glehmann/src/ITK/.ExternalData/MD5/c7787b3f83e90bc342bdf6b1649788b5 
"
-- Fetching "file:////home/glehmann/src/ITK/.ExternalData/MD5/c7787b3f83e90bc342bdf6b1649788b5 
"
-- Fetching "http://midas.kitware.com/api/rest/midas.bitstream.by.hash?hash=c7787b3f83e90bc342bdf6b1649788b5&algorithm=MD5 
"
-- Fetching "http://midas.kitware.com/api/rest/midas.bitstream.by.hash?hash=c7787b3f83e90bc342bdf6b1649788b5&algorithm=MD5 
"
[ 29%] Built target itktiff
[ 31%] Built target gdcmDSED
[ 31%] Built target gdcmIOD
[ 31%] Built target gdcmDICT
-- [download 100% complete]
-- [download 100% complete]
[ 36%] Built target gdcmMSFF
[ 51%] Built target itkhdf5
[ 53%] Built target itkhdf5_cpp
[ 68%] Built target itkvnl
-- Fetching "http://www.itk.org/files/ExternalData/MD5/c7787b3f83e90bc342bdf6b1649788b5 
"
-- Fetching "http://www.itk.org/files/ExternalData/MD5/c7787b3f83e90bc342bdf6b1649788b5 
"
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CMake Error at /home/glehmann/src/ITK/CMake/ExternalData.cmake:594  
(message):
   Object MD5=c7787b3f83e90bc342bdf6b1649788b5 not found at:

     file:////home/glehmann/src/ITK/.ExternalData/MD5/c7787b3f83e90bc342bdf6b1649788b5 
  ("Couldn't read a file:// file")
     http://midas.kitware.com/api/rest/midas.bitstream.by.hash?hash=c7787b3f83e90bc342bdf6b1649788b5&algorithm=MD5 
  (wrong hash MD5=a76764452db69661970b32dda5463c5d)
     http://www.itk.org/files/ExternalData/MD5/c7787b3f83e90bc342bdf6b1649788b5 
  (wrong hash MD5=764fb2379f313f3ca45eae3aca31d072)
Call Stack (most recent call first):
   /home/glehmann/src/ITK/CMake/ExternalData.cmake:616  
(_ExternalData_download_object)

-- [download 100% complete]
make[3]: *** [ExternalData/Modules/Bridge/ItkVtkGlue/test/Baseline/ 
QuickViewTest0.png.md5] Error 1
make[3]: *** Waiting for unfinished jobs....
/home/glehmann/src/ITK/build/ExternalData/Objects/MD5/ 
c7787b3f83e90bc342bdf6b1649788b5.tmpQgz5DC: No such file or directory
CMake Error at /home/glehmann/src/ITK/CMake/ExternalData.cmake:247  
(string):
   string end index: 32 is out of range 0 - 0
Call Stack (most recent call first):
   /home/glehmann/src/ITK/CMake/ExternalData.cmake:573  
(_ExternalData_compute_hash)
   /home/glehmann/src/ITK/CMake/ExternalData.cmake:616  
(_ExternalData_download_object)

make[3]: *** [ExternalData/Modules/Bridge/ItkVtkGlue/test/Baseline/ 
QuickViewTest.png.md5] Error 1
make[2]: *** [CMakeFiles/ITKData.dir/all] Error 2
make[2]: *** Waiting for unfinished jobs....
[ 85%] Built target itkv3p_netlib
make[1]: *** [Modules/Bridge/ItkVtkGlue/CMakeFiles/ITK-ItkVtkGlue- 
all.dir/rule] Error 2
make: *** [ITK-ItkVtkGlue-all] Error 2

Le 24 juin 11 à 22:41, Bill Lorensen a écrit :

> Brad,
>
> Maybe you should add a bold note on the wiki page to tell the old
> timers to rerun the setup scripts.
>
> BTW, the kudos still hold,
>
> Bill
>
> On Fri, Jun 24, 2011 at 4:30 PM, Brad King <brad.king at kitware.com>  
> wrote:
>> On 06/24/2011 04:26 PM, Bill Lorensen wrote:
>>> I changed the name of the baseline file, ran cmake, make. During the
>>> commit I saw the proper messages:
>>> Modules/Bridge/ItkVtkGlue/test/Baseline/QuickViewTest.png.md5: Added
>>> content to Git at refs/data/MD5/c7787b3f83e90bc342bdf6b1649788b5
>>> Modules/Bridge/ItkVtkGlue/test/Baseline/QuickViewTest.png.md5: Added
>>> content to local store at
>>> .ExternalData/MD5/c7787b3f83e90bc342bdf6b1649788b5
>>> Content link Modules/Bridge/ItkVtkGlue/test/Baseline/ 
>>> QuickViewTest.png.md5
>>> -> .ExternalData/MD5/c7787b3f83e90bc342bdf6b1649788b5
>>>
>>> which I had not seen before.
>>>
>>> Now I'll push to gerrit and try pull to another system.
>>
>> Great!  Nevermind my previous response.  The data object was uploaded
>> correctly this time :)
>>
>> -Brad
>>
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-- 
Gaëtan Lehmann
Biologie du Développement et de la Reproduction
INRA de Jouy-en-Josas (France)
tel: +33 1 34 65 29 66    fax: 01 34 65 29 09
http://mima2.jouy.inra.fr  http://www.itk.org
http://www.bepo.fr

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