[Insight-users] Problems while trying to compile the examples.
Mathieu Malaterre
mmalat at imaging . robarts . ca
Mon, 15 Jul 2002 14:57:40 -0400
Hi Linglan,
You can have a look to : Insight/Example/CMakeLists.txt. You'll see that :
SUBDIRS(GaussianFilter)
SUBDIRS(ImageRegistration)
will only be build if only 3 options have been enable in the main CMakeLists.txt
(Insight/CMakeLists.txt)
IF(HAS_METAIMAGE)
IF(HAS_FLTK)
IF(HAS_FLTKIMAGEVIEWER)
Could you check if one of them is set to 'NO' in this CMakeLists.txt file?
HTH
Mathieu
Linglan Edwards wrote:
> Thanks Luis,
>
> I did run ccmake to the Insight directory first. But I noticed that in some
> directories, (for example, in Examples/GaussianFilter,
> Examples/ImageRegistration), no Makefile was generated. Does that mean it
> couldn't find fltk or was it caused by something else? I have an older version
> of fltk installed (fltk-1.0.11, the only version I was able to compile), would
> that make any difference?
>
> Thanks,
>
> Linglan
> >
> >Hi Linglan,
> >
> >Some examples have dependencies that
> >condition if they are built or not.
> >
> >For example, some of them require FLTK
> >to be installed, some others require VTK.
> >
> >By enabling just Auxiliary and Examples it is to
> >expect that not all the examples will be compiled.
> >
> >
> >About the second group or errors that you posted:
> >
> >It is not a good idea to call ccmake in subdirectories.
> >(e.g. in Insight/Examples) since CMake will navigate
> >downstream in the directory tree but not into the
> >parent directory.
> >
> >Please invoke "ccmake" in the top build directory
> >and give the source directory as parameter.
> >
> >For example, I usually build Insight in:
> >
> > ~/lib/Insight
> >
> >so, I cd to ~/lib/Insight and invoke
> >
> > ccmake ~/src/Insight
> >
> >given that ~/src/Insight is where the sources are.
> >
> >Then, I can call "make" at any level of the
> >directory tree.
> >
> >
> >The invokation of ccmake in subdirectories will
> >result in inconsistent Makefiles since most of
> >the project-wide settings will not be available
> >at the subdirectory level.
> >
> >
> >Please let us know if that helps,
> >
> >
> > Thanks
> >
> > Luis
> >
> >
> >
> >===================================================
> >
> >Linglan Edwards wrote:
> >
> > > Hi,
> > >
> > > I set the BUILD_AUXILIARY and BUILD_EXAMPLES on, and generated the
> >make file. I
> > > did a make. at various places including a lot of the examples, I got the
> > > following kind of messages:
> > >
> > > ....
> > > c++ -g -O2 -ftemplate-depth-50
> > > -I/Development/ITK/Insight/Examples/MRIBiasCorrection
> >-I/Development/ITK/Insight
> > > -I/Development/ITK/Insight/Code/Numerics
> >-I/Development/ITK/Insight/Code/Common
> > > -I/Development/ITK/Insight/Code/IO
> >-I/Development/ITK/Insight/Code/Numerics/vxl
> > > -I/Development/ITK/Insight/Code/Numerics/vxl
> > > -I/Development/ITK/Insight/Code/Numerics/vxl/vcl
> > > -I/Development/ITK/Insight/Code/Numerics/vxl/vcl
> > > -I/Development/ITK/Insight/Utilities/png
> > > -I/Development/ITK/Insight/Utilities/zlib
> > > -I/Development/ITK/Insight/Code/BasicFilters
> > > -I/Development/ITK/Insight/Code/Algorithms
> > > -I/Development/ITK/Insight/Code/Numerics/Statistics
> > > -I/Development/ITK/Insight/Auxiliary/MetaImage
> > > -I/Development/ITK/Insight/Examples/MRIBiasCorrection -D_PTHREADS -c
> > > /Development/ITK/Insight/Examples/MRIBiasCorrection/ImageCorrector -o
> > > ImageCorrector.o
> > > c++:
> >/Development/ITK/Insight/Examples/MRIBiasCorrection/ImageCorrector: linker
> > > input file unused since linking not done
> > >
> > > -------
> > >
> > > I found that a lot of the examples were not compiled. Then I went
> >into the
> > > ./Examples directory, did a ccmake, and then 'make', and got the
> >following error
> > > messages:
> > > -------
> > > c++ -g -O2 itkAntiAliasBinaryImageFilterExample.o /Code/Common
> > > /Code/BasicFilters /Code/Algorithms /Code/Common /Code/IO
> > > /Examples/StreamedWatershedSegmentation/ParameterFileParser
> > >
> >-L/Development/ITK/Insight/Examples/StreamedWatershedSegmentation/ParameterFile
> P
> > > arser -lVXLNumerics -lITKCommon -lITKBasicFilters -lCio -lm -lparam
> > > -lITKBasicFilters -lITKCommon -lVXLNumerics -lITKIO -lVXLNumerics
> >-lITKCommon
> > > -lITKBasicFilters -lCio -lm -lparam -lITKBasicFilters -lITKCommon
> >-lVXLNumerics
> > > -lITKIO
> > >
> >-Wl,-R,/Development/ITK/Insight/Examples/StreamedWatershedSegmentation/Paramete
> r
> > > FileParser -o itkAntiAliasBinaryImageFilterExample
> > > c++: /Code/Common: No such file or directory
> > > c++: /Code/BasicFilters: No such file or directory
> > > c++: /Code/Algorithms: No such file or directory
> > > c++: /Code/Common: No such file or directory
> > > c++: /Code/IO: No such file or directory
> > > c++: /Examples/StreamedWatershedSegmentation/ParameterFileParser: No
> >such file
> > > or directory
> > > *** Error code 1
> > > The following command caused the error:
> > > c++ -g -O2 itkAntiAliasBinaryImageFilterExample.o /Code/Common
> > > /Code/BasicFilters /Code/Algorithms /Code/Common /Code/IO
> > > /Examples/StreamedWatershedSegmentation/ParameterFileParser
> > >
> >-L/Development/ITK/Insight/Examples/StreamedWatershedSegmentation/ParameterFile
> P
> > > arser -lVXLNumerics -lITKCommon -lITKBasicFilters -lCio -lm -lparam
> > > -lITKBasicFilters -lITKCommon -lVXLNumerics -lITKIO -lVXLNumerics
> >-lITKCommon
> > > -lITKBasicFilters -lCio -lm -lparam -lITKBasicFilters -lITKCommon
> >-lVXLNumerics
> > > -lITKIO
> > >
> >-Wl,-R,/Development/ITK/Insight/Examples/StreamedWatershedSegmentation/Paramete
> r
> > > FileParser -o itkAntiAliasBinaryImageFilterExample
> > > make: Fatal error: Command failed for target
> > > `itkAntiAliasBinaryImageFilterExample'
> > > Current working directory
> > > /Development/ITK/Insight/Examples/AntiAliasBinaryImageFilter
> > > *** Error code 1
> > > The following command caused the error:
> > > make - all
> > > make: Fatal error: Command failed for target `default_target'
> > > Current working directory
> > > /Development/ITK/Insight/Examples/AntiAliasBinaryImageFilter
> > > *** Error code 1
> > > The following command caused the error:
> > > cd /Development/ITK/Insight/Examples/AntiAliasBinaryImageFilter; make -
> > > default_target
> > > make: Fatal error: Command failed for target
> > > `default_target_AntiAliasBinaryImageFilter'
> > > Current working directory /Development/ITK/Insight/Examples
> > > *** Error code 1
> > > The following command caused the error:
> > > make - all
> > > make: Fatal error: Command failed for target `default_target'
> > > -------
> > >
> > > Did I miss something?
> > >
> > > Thanks,
> > >
> > > Linglan
> > > ============================
> > > Linglan Edwards, Ph.D.
> > > Senior Software Engineer
> > > National Library of Medicine
> > > Phone: (301) 435-3147
> > > Email: linglan@nlm.nih.gov
> > >
> > > _______________________________________________
> > > Insight-users mailing list
> > > Insight-users@public.kitware.com
> > > http://public.kitware.com/mailman/listinfo/insight-users
> > >
> > >
> >
> >
> >
> >
> >
> >
>
> ============================
> Linglan Edwards, Ph.D.
> Senior Software Engineer
> National Library of Medicine
> Phone: (301) 435-3147
> Email: linglan@nlm.nih.gov
>
> _______________________________________________
> Insight-users mailing list
> Insight-users@public.kitware.com
> http://public.kitware.com/mailman/listinfo/insight-users
--
Malaterre, Mathieu
The John P. Robarts Research Institute
Imaging Research Laboratories
http://www.imaging.robarts.ca/~mmalat