[Insight-users] All python tests fail

[Gaëtan Lehmann]

Le 28 nov. 07 à 19:16, Marco Nolden a écrit :

> Gaëtan Lehmann wrote:
>>
>> Hi Marco,
>
> Hi Gaëtan,
>
>>
>> It seem that you have used both WrapITK and ITK_CSWIG_PYTHON. I don't
>> think that this combination has been tested.
>> You should try to set ITK_CSWIG_PYTHON to OFF, to disable the older
>> wrapping method.
>>
> thanks for the hint. Just turning ITK_CSWIG_PYTHON to OFF didn't help.
> After that "make" just didn't do anything. So I set up a new build and
> the (better) result is here:
>
> http://www.itk.org/Testing/Sites/mbi056/Linux-c++/20071128-0957- 
> Experimental/Test.html
>
>> Please let us know if it fix the problem, so we can add an error  
>> during
>> the configuration process if the user have turned on the two wrapping
>> process.
>>
> As you can see it fixes the problem only partially.
>
> I also tried to execute
> the PythonMedianImageFilter
> (http://www.itk.org/Testing/Sites/mbi056/Linux-c++/20071128-0957- 
> Experimental/Results/ 
> __Wrapping_WrapITK_Python_Tests_PythonMedianImageFilter.html)
> test without the itkTestDriver by setting PYTHONPATH and executing
>
> /usr/bin/python
> /local/nolden/itk-3.4.0/InsightToolkit-3.4.0/Wrapping/WrapITK/ 
> Python/Tests/MedianImageFilter.py
> /local/nolden/itk-3.4.0/InsightToolkit-3.4.0/Wrapping/WrapITK/ 
> images/cthead1.png
> MedianImageFilter.png 3
>
> This results in a segmentation fault, stacktrace didn't provide much
> information, but I can send it/post it, if you like.

The logs are not really useful :-(
Can you run that command (on a single line):

PYTHONPATH=/local/nolden/itk-bin-wo-cswig/Wrapping/WrapITK/Python/:/ 
local/nolden/itk-bin-wo-cswig/bin/:$PYTHONPATH /usr/bin/python -c  
"import itk; itk.auto_progress(2); itk.force_load()"; echo $?

and report the result?

Thanks,

Gaëtan



[glehmann at marvin ~]$ python -c "import itk; itk.auto_progress(2);  
itk.force_load()"; echo $?
Loading VXLNumerics... Loading VXLNumerics... done
Loading Base... Loading Base... done
Loading UnaryPixelMath... Loading UnaryPixelMath... done
Loading PixelMath... Loading PixelMath... done
Loading Resize... Loading Resize... done
Loading BaseNumerics... Loading BaseNumerics... done
Loading IntensityFilters... Loading IntensityFilters... done
Loading BaseTransforms... Loading BaseTransforms... done
Loading IO... Loading IO... done
Loading Denoising... Loading Denoising... done
Loading LevelSet... Loading LevelSet... done
Loading DistanceMap... Loading DistanceMap... done
Loading attributeMorphology... Loading attributeMorphology... done
Loading BaseSpatialObject... Loading BaseSpatialObject... done
Loading componentTree... Loading componentTree... done
Loading Calculators... Loading Calculators... done
Loading DeformableTransforms... Loading DeformableTransforms... done
Loading Interpolators... Loading Interpolators... done
Loading logicOps... Loading logicOps... done
Loading binaryAttributeMorphology... Loading  
binaryAttributeMorphology... done
Loading BinaryMorphology... Loading BinaryMorphology... done
Loading binaryOpenClose... Loading binaryOpenClose... done
Loading Review... Loading Review... done
Loading Filtering... Loading Filtering... done
Loading Morphology... Loading Morphology... done
Loading EdgesAndContours... Loading EdgesAndContours... done
Loading SimpleFilters... Loading SimpleFilters... done
Loading SegmentationAndThreshold... Loading  
SegmentationAndThreshold... done
Loading Compose... Loading Compose... done
Loading colocalization... Loading colocalization... done
Loading FFT... Loading FFT... done
Loading SegmentationValidation... Loading SegmentationValidation... done
Loading Registration... Loading Registration... done
Loading agrobi... Loading agrobi... done
Loading fftshift... Loading fftshift... done
Loading FFTW... Loading FFTW... done
Loading fastRankMean... Loading fastRankMean... done
Loading gaussianMixtureThreshold... Loading  
gaussianMixtureThreshold... done
Loading ItkVtkGlue... Loading ItkVtkGlue... done
Loading isotropicResolution... Loading isotropicResolution... done
Loading kappaSigmaClipping... Loading kappaSigmaClipping... done
Loading MyRegistration... Loading MyRegistration... done
Loading labelShape... Loading labelShape... done
Loading localExtrema... Loading localExtrema... done
Loading met... Loading met... done
Loading minimaImposition... Loading minimaImposition... done
Loading MultiThreaderControl... Loading MultiThreaderControl... done
Loading labelCombination... Loading labelCombination... done
Loading BufferConversion... Loading BufferConversion... done
Loading ITKPyUtils... Loading ITKPyUtils... done
Loading rats... Loading rats... done
Loading sliceBySlice... Loading sliceBySlice... done
Loading projection... Loading projection... done
0



-- 
Gaëtan Lehmann
Biologie du Développement et de la Reproduction
INRA de Jouy-en-Josas (France)
tel: +33 1 34 65 29 66    fax: 01 34 65 29 09
http://voxel.jouy.inra.fr




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