[Insight-users] crashes N-D Linear Time Exact Signed Euclidean Distance Transform

[Oleksandr Dzyubak]

Hi Nick,

I did quick search and found that gcc 4.2.xx is more strict in terms of 
memory use.
Keeping this in mind, I did a test with my 3D images on a machine with 
gcc 3.4.6
where your program worked well with the images provided in the archive.

Your image SquareBinary201.hdr (size 157.8 KB ) info.

General Image Information:

number      : 1ifname      : SquareBinary201.hdr
ofname      :
iformat     : 9 (= Analyze      )
modality    : 20045 (= NM)
rawconv     : 0 (= No)
endian      : 1 (= Little)
compression : 0 (= None)
mwidth      : 201
mheight     : 201
bits        : 32
type        : 6 (= Int32)
dim[0]      : 4     (= total in use)
dim[1]      : 201   (= pixels X-dim)
dim[2]      : 201   (= pixels Y-dim)
dim[3]      : 1     (= planes | (time) slices)


My image t_Idx_300_260_0_p150_p240.hdr (size 23.7 MB) info.

ifname      : t_Idx_300_260_0_p150_p240.hdr
ofname      :
iformat     : 9 (= Analyze      )
modality    : 20045 (= NM)
rawconv     : 0 (= No)
endian      : 1 (= Little)
compression : 0 (= None)
General Image Information
number      : 100
mwidth      : 565
mheight     : 440
bits        : 8
type        : 3 (= Uint8)
dim[0]      : 4     (= total in use)
dim[1]      : 565   (= pixels X-dim)
dim[2]      : 440   (= pixels Y-dim)
dim[3]      : 100   (= planes | (time) slices)


So when I ran a code on my 3D image I got a program crash with the error 
below.

*********** Error ********

[rdzyubak at DesktopBSD: /3DSegmentation_Imgs]$ 
./SignedMaurerDistanceMapImageFilterTest t_Idx_300_260_0_p150_p240.hdr 
test.hdr
terminate called after throwing an instance of 'itk::ExceptionObject'
  what():  
/usr/local/include/InsightToolkit/Common/itkImportImageContainer.txx:193:
Failed to allocate memory for image.
Abort trap: 6




Oleksandr Dzyubak wrote:
> Hi Nick,
>
> Thanks for your quick response,
>
> Sorry for incorrectness in my previous email. I did use the program in 
> a proper way
> but the error stays the same (see below). The compilers I am using gcc 
> 4.2.3 and 4.1.2 (Debian).
> Unfortunately at the moment I do not have a box with gcc 4.0.1 so I 
> cannot test it.
> But as I said before when running gcc 3.4.6 (FreeBSD 6.3), I do not 
> experience
> any problem and the code works fine.
>
> Alex
>
> *********** Error ***
>
> dzyubak at debian: /Images$ ./SignedMaurerDistanceMapImageFilterTest 
> SquareBinary201.hdr test.hdr
> *** glibc detected *** malloc(): memory corruption: 0x0816ab90 ***
> Aborted
> dzyubak at debian: /Images$
>
>
> Nick Tustison wrote:
>> Hi Alex,
>>
>> I haven't encountered the errors below although I wrote and tested the
>> classes on my macbook using gcc 4.0.1.  I know a number of other
>> people who have had success on a variety of platforms.   From the
>> error message that you provided below, it doesn't appear that you are
>> specifying an output image file name (which the test code expects).
>> Could that be the source of your difficulties?
>>
>> Nick
>>
>>
>>
>>
>> On Wed, May 28, 2008 at 3:14 PM, Oleksandr Dzyubak 
>> <adzyubak at gmail.com> wrote:
>>  
>>> Dear ITKers,
>>>
>>> I tried to use N-D Linear Time Exact Signed Euclidean Distance 
>>> Transform
>>> from IJ.
>>>
>>> http://insight-journal.org/midas/handle.php?handle=1926/171
>>>
>>> Compilation went fine and I got a brand new and very nice looking
>>> executable.
>>> However when I tried to run it on the example images provided in the
>>> distribution archive,
>>> the program keeps crashing with the memory corruption error ( see error
>>> below).
>>>
>>> Am I missing something?
>>> Have anybody tried that algorithm implementation?
>>>
>>> Thanks,
>>>
>>> Alex
>>>
>>> PS.
>>> Just read a note about a big change in gcc when go from 3.x to 4.x
>>> and did some preliminary tests.
>>>
>>> Debian Lenny gcc 4.2.3 -- compiles fine; test run crashes.
>>> Debian Etch   gcc 4.1.2 -- compiles fine; test run crashes.
>>> FreeBSD 6.3  gcc 3.4.6 -- compiles fine; test run works fine.
>>>
>>> In this case, was N-D Linear Time Exact Signed Euclidean Distance 
>>> Transform
>>> written for some C++ flavour?
>>>
>>>
>>> *********************** Errors ********
>>>
>>> dzyubak at debian: /Images$ ls
>>> binaryPhantom.hdr      peep0_seg01_out.img
>>> binaryPhantom.img      SignedMaurerDistanceMapImageFilterTest
>>> binaryPhantom_out.hdr  SquareBinary201.hdr
>>> binaryPhantom_out.img  SquareBinary201.img
>>> peep0_seg01.hdr        SquareBinary201_out.hdr
>>> peep0_seg01.img        SquareBinary201_out.img
>>> peep0_seg01_out.hdr
>>> dzyubak at debian: /Images$ ./SignedMaurerDistanceMapImageFilterTest
>>> SquareBinary201.hdr
>>> *** glibc detected *** malloc(): memory corruption: 0x08176b90 ***
>>> Aborted
>>>
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>>> Insight-users at itk.org
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>>>
>>>     
>