[Insight-users] ITK and python

[Olivier Tournaire]

Thank you Gaëtan for you reply.

I tried this morning to build python wrapping for itk, but still without
success. Here are the steps I performed :

1) mkdir build_with_python && cd build_with_python
2) ccmake ..
3) Turn USE_WRAP_ITK ON
4) Turn ITK_USE_REVIEW ON
5) make -j3

The build stops at 43%, "Generating wrap_vcl_complex.xml"
He are are the errors :

In file included from /usr/include/wchar.h:831,
                 from /usr/include/c++/4.3/cwchar:52,
                 from /usr/include/c++/4.3/bits/postypes.h:47,
                 from /usr/include/c++/4.3/iosfwd:47,
                 from /usr/include/c++/4.3/ios:44,
                 from /usr/include/c++/4.3/istream:45,
                 from /usr/include/c++/4.3/sstream:44,
                 from /usr/include/c++/4.3/complex:52,
                 from
/home/olivier/work/dev/lib/InsightToolkit-3.8.0/Utilities/vxl/vcl/iso/vcl_complex.h:6,
                 from
/home/olivier/work/dev/lib/InsightToolkit-3.8.0/Utilities/vxl/vcl/vcl_complex.h:62,
                 from
/home/olivier/work/dev/lib/InsightToolkit-3.8.0/build_with_python/Wrapping/WrapITK/Modules/VXLNumerics/wrap_vcl_complex.cxx:1:
/usr/include/bits/wchar2.h: In function 'int swprintf(wchar_t*, size_t,
const wchar_t*, ...)':
/usr/include/bits/wchar2.h:290: error: '__builtin_va_arg_pack' was not
declared in this scope
/usr/include/bits/wchar2.h:291: error: '__builtin_va_arg_pack' was not
declared in this scope
/usr/include/bits/wchar2.h: In function 'int wprintf(const wchar_t*, ...)':
/usr/include/bits/wchar2.h:340: error: '__builtin_va_arg_pack' was not
declared in this scope
/usr/include/bits/wchar2.h: In function 'int fwprintf(__FILE*, const
wchar_t*, ...)':
/usr/include/bits/wchar2.h:347: error: '__builtin_va_arg_pack' was not
declared in this scope
In file included from /usr/include/stdio.h:906,
                 from /usr/include/c++/4.3/cstdio:50,
                 from /usr/include/c++/4.3/bits/char_traits.h:48,
                 from /usr/include/c++/4.3/ios:46,
                 from /usr/include/c++/4.3/istream:45,
                 from /usr/include/c++/4.3/sstream:44,
                 from /usr/include/c++/4.3/complex:52,
                 from
/home/olivier/work/dev/lib/InsightToolkit-3.8.0/Utilities/vxl/vcl/iso/vcl_complex.h:6,
                 from
/home/olivier/work/dev/lib/InsightToolkit-3.8.0/Utilities/vxl/vcl/vcl_complex.h:62,
                 from
/home/olivier/work/dev/lib/InsightToolkit-3.8.0/build_with_python/Wrapping/WrapITK/Modules/VXLNumerics/wrap_vcl_complex.cxx:1:
/usr/include/bits/stdio2.h: In function 'int sprintf(char*, const char*,
...)':
/usr/include/bits/stdio2.h:35: error: '__builtin_va_arg_pack' was not
declared in this scope
/usr/include/bits/stdio2.h: In function 'int snprintf(char*, size_t, const
char*, ...)':
/usr/include/bits/stdio2.h:66: error: '__builtin_va_arg_pack' was not
declared in this scope
/usr/include/bits/stdio2.h: In function 'int fprintf(FILE*, const char*,
...)':
/usr/include/bits/stdio2.h:99: error: '__builtin_va_arg_pack' was not
declared in this scope
/usr/include/bits/stdio2.h: In function 'int printf(const char*, ...)':
/usr/include/bits/stdio2.h:105: error: '__builtin_va_arg_pack' was not
declared in this scope
/usr/include/bits/stdio2.h: In function 'int asprintf(char**, const char*,
...)':
/usr/include/bits/stdio2.h:159: error: '__builtin_va_arg_pack' was not
declared in this scope
/usr/include/bits/stdio2.h: In function 'int __asprintf(char**, const char*,
...)':
/usr/include/bits/stdio2.h:167: error: '__builtin_va_arg_pack' was not
declared in this scope
/usr/include/bits/stdio2.h: In function 'int dprintf(int, const char*,
...)':
/usr/include/bits/stdio2.h:174: error: '__builtin_va_arg_pack' was not
declared in this scope
/usr/include/bits/stdio2.h: In function 'int obstack_printf(obstack*, const
char*, ...)':
/usr/include/bits/stdio2.h:182: error: '__builtin_va_arg_pack' was not
declared in this scope
make[2]: *** [Wrapping/WrapITK/Modules/VXLNumerics/wrap_vcl_complex.xml]
Erreur 1
make[1]: ***
[Wrapping/WrapITK/Modules/VXLNumerics/CMakeFiles/_VXLNumericsPython.dir/all]
Erreur 2
make: *** [all] Erreur 2


I am running an ubuntu-8.10 with g++ 4.3.2, gccxml 0.9.0, python 2.5 and
cswig 1.3.35. Do you have any idea of the problem ?

Best regards,

Olivier

2008/11/3 Gaëtan Lehmann <gaetan.lehmann at jouy.inra.fr>

>
> Le 2 nov. 08 à 19:41, Olivier Tournaire a écrit :
>
>  Hi all,
>>
>> Can someone tells me what is the status of ITK python wrapping ?
>> Which compiler(s) and versio(s) of python are supported and so on ...
>>
>
>
> Hi Olivier,
>
> You can use ITK from python in 3 ways at this time:
> * CSwig: that's the one you see directly in ITK options as ;
> * WrapITK stable: it is included in ITK, and is enabled with the
> USE_WRAPITK_OPTION ;
> * WrapITK unstable: the development version of wrapitk, available in a
> separate repository.
> I would recommend to use WrapITK stable, as it is way more complete than
> CSwig, and much tested than WrapITK unstable.
>
> All those version should work with python 2.4 and 2.5, and gcc 4.x and msvc
> 7.1, on linux, Mac OS X and solaris.
> I'm using gcc 4.3 at this time.
>
> I've been quite busy in the last week, and I didn't had enough time to
> carefully read the mailing list, so when you have a question on python
> wrapping, please put my address in the recipients (and keep also itk users
> ML, for the record). That way I shouldn't miss it.
>
> Regards,
>
> Gaëtan
>
> --
> Gaëtan Lehmann
> Biologie du Développement et de la Reproduction
> INRA de Jouy-en-Josas (France)
> tel: +33 1 34 65 29 66    fax: 01 34 65 29 09
> http://voxel.jouy.inra.fr  http://www.mandriva.org
> http://www.itk.org  http://www.clavier-dvorak.org
>
>
-------------- next part --------------
An HTML attachment was scrubbed...
URL: <http://www.itk.org/pipermail/insight-users/attachments/20081103/3eee595f/attachment.htm>