[Insight-users] Insight-users Digest, Vol 55, Issue 4
David Fuentes
fuentesdt at gmail.com
Tue Nov 4 12:46:25 EST 2008
What is the primary intention of the scripting language interface?
Is the WrapITK interface
http://www.insight-journal.org/browse/publication/85
intended simply to make __Existing__ ITK routines callable from python/tcl/java?
Is WrapITK interface intended for algorithm/technique development
directly in the scripting language itself?
-OR- Should new algorithms and techniques for filtering, segmentation,
etc. be written in C++ then wrapped in a scripting language?
thank you,
David Fuentes
>
> Message: 1
> Date: Mon, 3 Nov 2008 10:26:13 +0100
> From: "Olivier Tournaire" <olitour at gmail.com>
> Subject: Re: [Insight-users] ITK and python
> To: " Ga?tan Lehmann " <gaetan.lehmann at jouy.inra.fr>
> Cc: Insight User <insight-users at itk.org>
> Message-ID:
> <4cbd7b750811030126y831d713ic67394fa1cce8508 at mail.gmail.com>
> Content-Type: text/plain; charset="iso-8859-1"
>
> Thank you Ga?tan for you reply.
>
> I tried this morning to build python wrapping for itk, but still without
> success. Here are the steps I performed :
>
> 1) mkdir build_with_python && cd build_with_python
> 2) ccmake ..
> 3) Turn USE_WRAP_ITK ON
> 4) Turn ITK_USE_REVIEW ON
> 5) make -j3
>
> The build stops at 43%, "Generating wrap_vcl_complex.xml"
> He are are the errors :
>
> In file included from /usr/include/wchar.h:831,
> from /usr/include/c++/4.3/cwchar:52,
> from /usr/include/c++/4.3/bits/postypes.h:47,
> from /usr/include/c++/4.3/iosfwd:47,
> from /usr/include/c++/4.3/ios:44,
> from /usr/include/c++/4.3/istream:45,
> from /usr/include/c++/4.3/sstream:44,
> from /usr/include/c++/4.3/complex:52,
> from
> /home/olivier/work/dev/lib/InsightToolkit-3.8.0/Utilities/vxl/vcl/iso/vcl_complex.h:6,
> from
> /home/olivier/work/dev/lib/InsightToolkit-3.8.0/Utilities/vxl/vcl/vcl_complex.h:62,
> from
> /home/olivier/work/dev/lib/InsightToolkit-3.8.0/build_with_python/Wrapping/WrapITK/Modules/VXLNumerics/wrap_vcl_complex.cxx:1:
> /usr/include/bits/wchar2.h: In function 'int swprintf(wchar_t*, size_t,
> const wchar_t*, ...)':
> /usr/include/bits/wchar2.h:290: error: '__builtin_va_arg_pack' was not
> declared in this scope
> /usr/include/bits/wchar2.h:291: error: '__builtin_va_arg_pack' was not
> declared in this scope
> /usr/include/bits/wchar2.h: In function 'int wprintf(const wchar_t*, ...)':
> /usr/include/bits/wchar2.h:340: error: '__builtin_va_arg_pack' was not
> declared in this scope
> /usr/include/bits/wchar2.h: In function 'int fwprintf(__FILE*, const
> wchar_t*, ...)':
> /usr/include/bits/wchar2.h:347: error: '__builtin_va_arg_pack' was not
> declared in this scope
> In file included from /usr/include/stdio.h:906,
> from /usr/include/c++/4.3/cstdio:50,
> from /usr/include/c++/4.3/bits/char_traits.h:48,
> from /usr/include/c++/4.3/ios:46,
> from /usr/include/c++/4.3/istream:45,
> from /usr/include/c++/4.3/sstream:44,
> from /usr/include/c++/4.3/complex:52,
> from
> /home/olivier/work/dev/lib/InsightToolkit-3.8.0/Utilities/vxl/vcl/iso/vcl_complex.h:6,
> from
> /home/olivier/work/dev/lib/InsightToolkit-3.8.0/Utilities/vxl/vcl/vcl_complex.h:62,
> from
> /home/olivier/work/dev/lib/InsightToolkit-3.8.0/build_with_python/Wrapping/WrapITK/Modules/VXLNumerics/wrap_vcl_complex.cxx:1:
> /usr/include/bits/stdio2.h: In function 'int sprintf(char*, const char*,
> ...)':
> /usr/include/bits/stdio2.h:35: error: '__builtin_va_arg_pack' was not
> declared in this scope
> /usr/include/bits/stdio2.h: In function 'int snprintf(char*, size_t, const
> char*, ...)':
> /usr/include/bits/stdio2.h:66: error: '__builtin_va_arg_pack' was not
> declared in this scope
> /usr/include/bits/stdio2.h: In function 'int fprintf(FILE*, const char*,
> ...)':
> /usr/include/bits/stdio2.h:99: error: '__builtin_va_arg_pack' was not
> declared in this scope
> /usr/include/bits/stdio2.h: In function 'int printf(const char*, ...)':
> /usr/include/bits/stdio2.h:105: error: '__builtin_va_arg_pack' was not
> declared in this scope
> /usr/include/bits/stdio2.h: In function 'int asprintf(char**, const char*,
> ...)':
> /usr/include/bits/stdio2.h:159: error: '__builtin_va_arg_pack' was not
> declared in this scope
> /usr/include/bits/stdio2.h: In function 'int __asprintf(char**, const char*,
> ...)':
> /usr/include/bits/stdio2.h:167: error: '__builtin_va_arg_pack' was not
> declared in this scope
> /usr/include/bits/stdio2.h: In function 'int dprintf(int, const char*,
> ...)':
> /usr/include/bits/stdio2.h:174: error: '__builtin_va_arg_pack' was not
> declared in this scope
> /usr/include/bits/stdio2.h: In function 'int obstack_printf(obstack*, const
> char*, ...)':
> /usr/include/bits/stdio2.h:182: error: '__builtin_va_arg_pack' was not
> declared in this scope
> make[2]: *** [Wrapping/WrapITK/Modules/VXLNumerics/wrap_vcl_complex.xml]
> Erreur 1
> make[1]: ***
> [Wrapping/WrapITK/Modules/VXLNumerics/CMakeFiles/_VXLNumericsPython.dir/all]
> Erreur 2
> make: *** [all] Erreur 2
>
>
> I am running an ubuntu-8.10 with g++ 4.3.2, gccxml 0.9.0, python 2.5 and
> cswig 1.3.35. Do you have any idea of the problem ?
>
> Best regards,
>
> Olivier
>
> 2008/11/3 Ga?tan Lehmann <gaetan.lehmann at jouy.inra.fr>
>
>>
>> Le 2 nov. 08 ? 19:41, Olivier Tournaire a ?crit :
>>
>> Hi all,
>>>
>>> Can someone tells me what is the status of ITK python wrapping ?
>>> Which compiler(s) and versio(s) of python are supported and so on ...
>>>
>>
>>
>> Hi Olivier,
>>
>> You can use ITK from python in 3 ways at this time:
>> * CSwig: that's the one you see directly in ITK options as ;
>> * WrapITK stable: it is included in ITK, and is enabled with the
>> USE_WRAPITK_OPTION ;
>> * WrapITK unstable: the development version of wrapitk, available in a
>> separate repository.
>> I would recommend to use WrapITK stable, as it is way more complete than
>> CSwig, and much tested than WrapITK unstable.
>>
>> All those version should work with python 2.4 and 2.5, and gcc 4.x and msvc
>> 7.1, on linux, Mac OS X and solaris.
>> I'm using gcc 4.3 at this time.
>>
>> I've been quite busy in the last week, and I didn't had enough time to
>> carefully read the mailing list, so when you have a question on python
>> wrapping, please put my address in the recipients (and keep also itk users
>> ML, for the record). That way I shouldn't miss it.
>>
>> Regards,
>>
>> Ga?tan
>>
>> --
>> Ga?tan Lehmann
>> Biologie du D?veloppement et de la Reproduction
>> INRA de Jouy-en-Josas (France)
>> tel: +33 1 34 65 29 66 fax: 01 34 65 29 09
>> http://voxel.jouy.inra.fr http://www.mandriva.org
>> http://www.itk.org http://www.clavier-dvorak.org
>>
>>
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