[Insight-users] priors in itkBayesianClassifierImageFilter
Gaëtan Lehmann
gaetan.lehmann at jouy.inra.fr
Thu Dec 17 10:48:25 EST 2009
Hi Karthik,
It seems that those changes are breaking wrapitk build:
http://www.cdash.org/CDash/viewBuildError.php?buildid=495103
Maybe this is due to a instantiation with the wrong type. I put the
list at the end - please let me know if there is something wrong.
Gaëtan
typedef itk::BayesianClassifierImageFilter< itk::VectorImage<
unsigned char,2 >, unsigned char, float
>::BayesianClassifierImageFilter
itkBayesianClassifierImageFilterVIUC2UCF;
typedef itk::BayesianClassifierImageFilter< itk::VectorImage<
unsigned char,2 >, unsigned short, float
>::BayesianClassifierImageFilter
itkBayesianClassifierImageFilterVIUC2USF;
typedef itk::BayesianClassifierImageFilter< itk::VectorImage<
unsigned short,2 >, unsigned char, float
>::BayesianClassifierImageFilter
itkBayesianClassifierImageFilterVIUS2UCF;
typedef itk::BayesianClassifierImageFilter< itk::VectorImage<
unsigned short,2 >, unsigned short, float
>::BayesianClassifierImageFilter
itkBayesianClassifierImageFilterVIUS2USF;
typedef itk::BayesianClassifierImageFilter< itk::VectorImage<
float,2 >, unsigned char, float >::BayesianClassifierImageFilter
itkBayesianClassifierImageFilterVIF2UCF;
typedef itk::BayesianClassifierImageFilter< itk::VectorImage<
float,2 >, unsigned short, float >::BayesianClassifierImageFilter
itkBayesianClassifierImageFilterVIF2USF;
typedef itk::BayesianClassifierImageFilter< itk::VectorImage<
unsigned char,3 >, unsigned char, float
>::BayesianClassifierImageFilter
itkBayesianClassifierImageFilterVIUC3UCF;
typedef itk::BayesianClassifierImageFilter< itk::VectorImage<
unsigned char,3 >, unsigned short, float
>::BayesianClassifierImageFilter
itkBayesianClassifierImageFilterVIUC3USF;
typedef itk::BayesianClassifierImageFilter< itk::VectorImage<
unsigned short,3 >, unsigned char, float
>::BayesianClassifierImageFilter
itkBayesianClassifierImageFilterVIUS3UCF;
typedef itk::BayesianClassifierImageFilter< itk::VectorImage<
unsigned short,3 >, unsigned short, float
>::BayesianClassifierImageFilter
itkBayesianClassifierImageFilterVIUS3USF;
typedef itk::BayesianClassifierImageFilter< itk::VectorImage<
float,3 >, unsigned char, float >::BayesianClassifierImageFilter
itkBayesianClassifierImageFilterVIF3UCF;
typedef itk::BayesianClassifierImageFilter< itk::VectorImage<
float,3 >, unsigned short, float >::BayesianClassifierImageFilter
itkBayesianClassifierImageFilterVIF3USF;
Le 16 déc. 09 à 21:58, Karthik Krishnan a écrit :
> sorry.. been busy.. Indeed you are right.. Please update again...
>
> /cvsroot/Insight/Insight/Code/Algorithms/
> itkBayesianClassifierImageFilter.txx,v
> <-- itkBayesianClassifierImageFilter.txx
> new revision: 1.11; previous revision: 1.10
>
> I'll try and check in a test this weekend that exercises specifying a
> prior vector image. (As Luis would say, If is not tested, it is
> broken, and indeed it was :) )
>
>
> On Tue, Dec 15, 2009 at 7:44 AM, Bruno Arbter
> <bruno.arbter at isv.uni-stuttgart.de> wrote:
>> Works fine up to the calculation of the posteriors with priors
>> (line 205 in
>> itkBayesianClassifierImageFilter.txx). I'm not very familiar with
>> iterators
>> up to now, but the posteriors cannot be accessed in this way
>> (posteriors[i]=). Perhaps the variable needs some kind of memory
>> allocation,
>> doesn't it?
>>
>>> -----Ursprüngliche Nachricht-----
>>> Von: Karthik Krishnan [mailto:karthik.krishnan at kitware.com]
>>> Gesendet: Dienstag, 15. Dezember 2009 11:32
>>> An: Bruno Arbter
>>> Cc: insight-users at itk.org
>>> Betreff: Re: [Insight-users] priors in
>>> itkBayesianClassifierImageFilter
>>>
>>> Thanks for catching this...
>>>
>>> Fix committed :
>>>
>>> /cvsroot/Insight/Insight/Code/Algorithms/
>>> itkBayesianClassifierImageFilt
>>> er.h,v
>>> <-- itkBayesianClassifierImageFilter.h
>>> new revision: 1.16; previous revision: 1.15
>>> /cvsroot/Insight/Insight/Code/Algorithms/
>>> itkBayesianClassifierImageFilt
>>> er.txx,v
>>> <-- itkBayesianClassifierImageFilter.txx
>>> new revision: 1.10; previous revision: 1.9
>>>
>>> Update and please let us know..
>>>
>>> On Tue, Dec 15, 2009 at 5:10 AM, Bruno Arbter
>>> <bruno.arbter at isv.uni-stuttgart.de> wrote:
>>>> Okay, priors can be set via SetInput - but the flag
>>> m_UserProvidedPriors in
>>>> itkBayesianClassifierImageFilter remains false, and therefore the
>>> priors are
>>>> not used without changing the constructor.
>>>>
>>>> Is there an example that really uses priors?
>>>>
>>>> Thanks
>>>> Bruno
>>>>
>>>>> -----Ursprüngliche Nachricht-----
>>>>> Von: Karthik Krishnan [mailto:karthik.krishnan at kitware.com]
>>>>> Gesendet: Montag, 14. Dezember 2009 14:14
>>>>> An: Bruno Arbter
>>>>> Cc: insight-users at itk.org
>>>>> Betreff: Re: [Insight-users] priors in
>>> itkBayesianClassifierImageFilter
>>>>>
>>>>> Take a look at Examples/Statistics/BayesianClassifier.cxx: and at
>>>>> Examples/Statistics/BayesianClassifierInitializer.cxx:
>>>>>
>>>>> This class does have a method to set the priors. The prior image
>>>>> expected (optionally as the second input) is a N component
>>>>> VectorImage, where N is the number of classes. If the prior
>>>>> image is
>>>>> not specified, a uniform distribution is taken, (ie no priors.).
>>>>>
>>>>> The API to do this is simply....
>>>>>
>>>>> filter->SetInput( 1, priorVectorImage );
>>>>>
>>>>> This is documented clearly in the doxygen.
>>>>>
>>>>> Thanks
>>>>> --
>>>>> karthik
>>>>>
>>>>> On Mon, Dec 14, 2009 at 7:47 AM, Bruno Arbter
>>>>> <bruno.arbter at isv.uni-stuttgart.de> wrote:
>>>>>> I want to use itkBayesianClassifierImageFilter with priors but I
>>>>> cannot find
>>>>>> any function to set the priors (e.g. SetPriors) in the class
>>>>>> itkBayesianClassifierImageFilter. How is the correct way to set
>>>>> priors?
>>>>>>
>>>>>> Bruno
>>>>>>
>>>>>> _____________________________________
>>>>>> Powered by www.kitware.com
>>>>>>
>>>>>> Visit other Kitware open-source projects at
>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>
>>>>>> Kitware offers ITK Training Courses, for more information visit:
>>>>>> http://www.kitware.com/products/protraining.html
>>>>>>
>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>
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>>>>>> http://www.itk.org/mailman/listinfo/insight-users
>>>>>>
>>>>>
>>>>>
>>>>>
>>>>> --
>>>>> _________________________________
>>>>> Karthik Krishnan
>>>>> R&D Engineer,
>>>>> Kitware Inc.
>>>>> Ph: +1 5188814919, +91 9538477060
>>>>
>>>> _____________________________________
>>>> Powered by www.kitware.com
>>>>
>>>> Visit other Kitware open-source projects at
>>>> http://www.kitware.com/opensource/opensource.html
>>>>
>>>> Kitware offers ITK Training Courses, for more information visit:
>>>> http://www.kitware.com/products/protraining.html
>>>>
>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>
>>>> Follow this link to subscribe/unsubscribe:
>>>> http://www.itk.org/mailman/listinfo/insight-users
>>>>
>>>
>>>
>>>
>>> --
>>> _________________________________
>>> Karthik Krishnan
>>> R&D Engineer,
>>> Kitware Inc.
>>> Ph: +1 5188814919, +91 9538477060
>>
>> _____________________________________
>> Powered by www.kitware.com
>>
>> Visit other Kitware open-source projects at
>> http://www.kitware.com/opensource/opensource.html
>>
>> Kitware offers ITK Training Courses, for more information visit:
>> http://www.kitware.com/products/protraining.html
>>
>> Please keep messages on-topic and check the ITK FAQ at:
>> http://www.itk.org/Wiki/ITK_FAQ
>>
>> Follow this link to subscribe/unsubscribe:
>> http://www.itk.org/mailman/listinfo/insight-users
>>
>
>
>
> --
> _________________________________
> Karthik Krishnan
> R&D Engineer,
> Kitware Inc.
> Ph: +1 5188814919, +91 9538477060
> _____________________________________
> Powered by www.kitware.com
>
> Visit other Kitware open-source projects at
> http://www.kitware.com/opensource/opensource.html
>
> Kitware offers ITK Training Courses, for more information visit:
> http://www.kitware.com/products/protraining.html
>
> Please keep messages on-topic and check the ITK FAQ at:
> http://www.itk.org/Wiki/ITK_FAQ
>
> Follow this link to subscribe/unsubscribe:
> http://www.itk.org/mailman/listinfo/insight-users
--
Gaëtan Lehmann
Biologie du Développement et de la Reproduction
INRA de Jouy-en-Josas (France)
tel: +33 1 34 65 29 66 fax: 01 34 65 29 09
http://voxel.jouy.inra.fr http://www.itk.org
http://www.mandriva.org http://www.bepo.fr
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