[Insight-users] intel 10.1 undefined reference

[fuentesdt at gmail.com]

Many thanks dan! I didn't know that you could compile
ITK completely from the command line that.


What version of intel are you using?
I am able to compile ITK with intel 10.1.017
on CentOS 5 as well, but for some reason can't get it to link
on Ubuntu 8.04...



df




On Tue, 13 Jan 2009, Blezek, Daniel J. wrote:

> Hi David,
>
>  We use the Intel compiler under CentOS 5.1 without problem.  Did you
> specify icc on the initial CMake command line?  If you try to change it
> later, bad and mysterious things happen.  Here's how I run CMake to
> build ITK from an empty build directory.  Give it a go and see if it
> helps.
>
> env CXX=icpc CC=icc cmake -DBUILD_SHARED=OFF
> -DCMAKE_CXX_FLAGS="-static-intel -openmp -O3"
> -DCMAKE_C_FLAGS="-static-intel -openmp -O3" -DCMAKE_BUILD_TYPE=Release
> -DBUILD_EXAMPLES=OFF -DBUILD_TESTING=OFF  ../Insight/
>
> You can skip the openmp flag if you like, doesn't hurt anything.
>
> -dan
>
> -----Original Message-----
> From: insight-users-bounces at itk.org
> [mailto:insight-users-bounces at itk.org] On Behalf Of David Fuentes
> Sent: Tuesday, January 13, 2009 10:00 AM
> To: insight-users at itk.org
> Subject: [Insight-users] intel 10.1 undefined reference
>
> hello I'm trying to build ITK with icc,icpc 10.1 on Ubuntu
>
> usul$ uname -a
> Linux usul.ices.utexas.edu 2.6.24-23-generic #1 SMP Thu Nov 27 18:13:46
> UTC 2008 x86_64 GNU/Linux usul$ lsb_release -a No LSB modules are
> available.
> Distributor ID: Ubuntu
> Description:    Ubuntu 8.04.2
> Release:        8.04
> Codename:       hardy
>
>
> and am getting the following linking errors
>
>
> Linking CXX executable ../../bin/itkTestDriver
> ../../bin/libITKCommon.a(itkLightObject.o): In function
> `__gnu_cxx::__exchange_and_add(int volatile*, int)':
> /usr/include/c++/4.2.4/ext/atomicity.h:51: undefined reference to
> `__sync_fetch_and_add'
> ../../bin/libITKCommon.a(itkLightObject.o): In function
> `__gnu_cxx::__atomic_add(int volatile*, int)':
> /usr/include/c++/4.2.4/ext/atomicity.h:55: undefined reference to
> `__sync_fetch_and_add'
> ../../bin/libITKCommon.a(itkTimeStamp.o): In function
> `__gnu_cxx::__exchange_and_add(int volatile*, int)':
> /usr/include/c++/4.2.4/ext/atomicity.h:51: undefined reference to
> `__sync_fetch_and_add'
> make[2]: *** [bin/itkTestDriver] Error 1
> make[1]: *** [Code/IO/CMakeFiles/itkTestDriver.dir/all] Error 2
> make: *** [all] Error 2
>
>
> Has anyone had a similiar problem?
>
>
> thank you,
> David Fuentes
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