[Insight-users] intel 10.1 undefined reference

[Blezek, Daniel J.]

David,

  I've been out for a week, sorry for late response.  We have 10.1.012
installed, but no Ubuntu.  I helpful build debug tool is to compile with
verbose output:

make VERBOSE=1 

This gives all sort of information.  You should look to see what defines
hit the command line, etc.  I'd also take a look in the CMakeCache.txt
file to see if anything looks funny there.  You could try to diff the
cache from the CentOS and Ubuntu builds, but it may be cluttered with
stupid things.

Cheers,
-dan

-----Original Message-----
From: fuentesdt at gmail.com [mailto:fuentesdt at gmail.com] 
Sent: Tuesday, January 13, 2009 11:07 PM
To: Blezek, Daniel J.
Cc: insight-users at itk.org
Subject: RE: [Insight-users] intel 10.1 undefined reference



Many thanks dan! I didn't know that you could compile ITK completely
from the command line that.


What version of intel are you using?
I am able to compile ITK with intel 10.1.017 on CentOS 5 as well, but
for some reason can't get it to link on Ubuntu 8.04...



df




On Tue, 13 Jan 2009, Blezek, Daniel J. wrote:

> Hi David,
>
>  We use the Intel compiler under CentOS 5.1 without problem.  Did you 
> specify icc on the initial CMake command line?  If you try to change 
> it later, bad and mysterious things happen.  Here's how I run CMake to

> build ITK from an empty build directory.  Give it a go and see if it 
> helps.
>
> env CXX=icpc CC=icc cmake -DBUILD_SHARED=OFF 
> -DCMAKE_CXX_FLAGS="-static-intel -openmp -O3"
> -DCMAKE_C_FLAGS="-static-intel -openmp -O3" -DCMAKE_BUILD_TYPE=Release

> -DBUILD_EXAMPLES=OFF -DBUILD_TESTING=OFF  ../Insight/
>
> You can skip the openmp flag if you like, doesn't hurt anything.
>
> -dan
>
> -----Original Message-----
> From: insight-users-bounces at itk.org
> [mailto:insight-users-bounces at itk.org] On Behalf Of David Fuentes
> Sent: Tuesday, January 13, 2009 10:00 AM
> To: insight-users at itk.org
> Subject: [Insight-users] intel 10.1 undefined reference
>
> hello I'm trying to build ITK with icc,icpc 10.1 on Ubuntu
>
> usul$ uname -a
> Linux usul.ices.utexas.edu 2.6.24-23-generic #1 SMP Thu Nov 27 
> 18:13:46 UTC 2008 x86_64 GNU/Linux usul$ lsb_release -a No LSB modules

> are available.
> Distributor ID: Ubuntu
> Description:    Ubuntu 8.04.2
> Release:        8.04
> Codename:       hardy
>
>
> and am getting the following linking errors
>
>
> Linking CXX executable ../../bin/itkTestDriver
> ../../bin/libITKCommon.a(itkLightObject.o): In function 
> `__gnu_cxx::__exchange_and_add(int volatile*, int)':
> /usr/include/c++/4.2.4/ext/atomicity.h:51: undefined reference to 
> `__sync_fetch_and_add'
> ../../bin/libITKCommon.a(itkLightObject.o): In function 
> `__gnu_cxx::__atomic_add(int volatile*, int)':
> /usr/include/c++/4.2.4/ext/atomicity.h:55: undefined reference to 
> `__sync_fetch_and_add'
> ../../bin/libITKCommon.a(itkTimeStamp.o): In function 
> `__gnu_cxx::__exchange_and_add(int volatile*, int)':
> /usr/include/c++/4.2.4/ext/atomicity.h:51: undefined reference to 
> `__sync_fetch_and_add'
> make[2]: *** [bin/itkTestDriver] Error 1
> make[1]: *** [Code/IO/CMakeFiles/itkTestDriver.dir/all] Error 2
> make: *** [all] Error 2
>
>
> Has anyone had a similiar problem?
>
>
> thank you,
> David Fuentes
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