[Insight-users] can not build--IBSRClassification application

[Baoyun Li]

Hello, Luis:

Thank you so much. I did as you suggested, now I can build the application.

Can you please show me example how I should write cmakelist in this case? I learned to write cmake list through ITK tutorial, but can't make this case work such as individual EM of Gassian Mixture and MRF.

Can you please tell what I should do if I only want to make one program such as EM of Gassian Mixture and MRF? Currently is working, but it is weired since I need to use ccmake for all, and then build the one I need.

I tried to wrtie cmakelist, but not working. The compiler can not find header, what should be the problem. I believe the application code can be made and build indepdently.


Thanks

Baoyun



________________________________
From: Luis Ibanez <luis.ibanez at kitware.com>
To: Baoyun Li <baoyun_li123 at yahoo.com>
Cc: insight-users at itk.org
Sent: Wednesday, March 4, 2009 11:38:37 AM
Subject: Re: can not build--IBSRClassification application


Hi Baoyun,

You must:

1) Configure InsightApplications from the TOP,
  not from the IBSRClassification subdirectory

2) Then, cd in to the IBSRClassification subdir
  and type 'make'


  Regards,


    Luis


----------------
Baoyun Li wrote:
> Dear Luis and All:
>  I am trying to buid IBSRClassification in the ITK application for gaussian mixture models classification. But I got a lot of buid errors.
>  I have one folder called  EM_MRF, inside this folder I copy the IBSRClassification folder and create build folder. I modified camkelist file (See the end of the letter) to find ITK, if I did not change the cmakelist file, I got more errors
>  Then in the build folder, I typed:
>  ccmake ../IBSRClassification.
>  and give the ITK directore, tyep C and G, and quitc cmake. Then typed make to build the code,  I got a lot of errors. It seems that it can not find most of the header.  I only copy some of them to here.
>  Can sombody help me to figure this problem?
>  Baoyun
>  ***********************error messages
>  In file included from /home/gtao/code/vector_segmentation/EM_MRF/IBSRClassification/Code/ClassifierValidationInputParser.h:228,
>                  from /home/gtao/code/vector_segmentation/EM_MRF/IBSRClassification/Code/GaussianClassifierValidationApp.h:22,
>                  from /home/gtao/code/vector_segmentation/EM_MRF/IBSRClassification/Code/GaussianClassifierValidationApp.cxx:20:
> /home/gtao/code/vector_segmentation/EM_MRF/IBSRClassification/Code/ClassifierValidationInputParser.txx:21:34: error: RawSliceVolumeReader.h: No such file or directory
> /home/gtao/code/vector_segmentation/EM_MRF/IBSRClassification/Code/ClassifierValidationInputParser.txx:22:29: error: RawVolumeReader.h: No such file or directory
> In file included from /home/gtao/code/vector_segmentation/EM_MRF/IBSRClassification/Code/GaussianClassifierValidationApp.h:24,
>                  from /home/gtao/code/vector_segmentation/EM_MRF/IBSRClassification/Code/GaussianClassifierValidationApp.cxx:20:
> /home/gtao/code/vector_segmentation/EM_MRF/IBSRClassification/Code/ClassifierValidationOutput.h:22:29: error: RawVolumeWriter.h: No such file or directory
>  ******************Below is the cmakelist file I modified to find ITK, if I did not change the cmakelist file, I got more errors
>  cmake_minimum_required(VERSION 2.4)
>    FIND_PACKAGE(ITK)
>  IF(ITK_FOUND)
>    INCLUDE(${ITK_USE_FILE})
>  ELSE(ITK_FOUND)
>    MESSAGE(FATAL_ERROR
>            "Cannot build InsightApplications without ITK.  Please set ITK_DIR.")
>  ENDIF(ITK_FOUND)
>  INCLUDE_DIRECTORIES(
> ${IBSRClassification_SOURCE_DIR}/../Common
> ${IBSRClassification_SOURCE_DIR}
> )
> ADD_EXECUTABLE(GaussianIBSRClassificationApp Code/GaussianClassifierValidationApp.cxx)
> INSTALL_TARGETS(/bin GaussianIBSRClassificationApp)
> TARGET_LINK_LIBRARIES (GaussianIBSRClassificationApp
> ITKBasicFilters
> ITKIO
> )
> 
> ADD_EXECUTABLE(KmeansIBSRClassificationApp Code/KmeansClassifierValidationApp.cxx)
> INSTALL_TARGETS(/bin KmeansIBSRClassificationApp)
> TARGET_LINK_LIBRARIES (KmeansIBSRClassificationApp
> ITKBasicFilters
> ITKIO
> )
> 
> ADD_EXECUTABLE(MRFGaussianIBSRClassificationApp Code/MRFGaussianClassifierValidationApp.cxx)
> INSTALL_TARGETS(/bin MRFGaussianIBSRClassificationApp)
> TARGET_LINK_LIBRARIES (MRFGaussianIBSRClassificationApp
> ITKBasicFilters
> ITKIO
> )
> 
> ADD_EXECUTABLE(MRFKmeansIBSRClassificationApp Code/MRFKmeansClassifierValidationApp.cxx)
> INSTALL_TARGETS(/bin MRFKmeansIBSRClassificationApp)
> TARGET_LINK_LIBRARIES (MRFKmeansIBSRClassificationApp
> ITKBasicFilters
> ITKIO
> )
> 



      
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