[Insight-users] can not build--IBSRClassification application

[Luis Ibanez]

Hi Baoyun,


Please look inside of the CMakeLists.txt file in the directory;

     InsightApplications/IBSRValidation/IBSRClassification


You will find:


PROJECT( IBSRClassification )

IF( BUILD_OUTSIDE_INSIGHT_APPLICATIONS )

   FIND_PACKAGE(ITK)
   IF(ITK_FOUND)
     INCLUDE(${ITK_USE_FILE})
   ELSE(ITK_FOUND)
     MESSAGE(FATAL_ERROR
             "Cannot build InsightApplications without ITK.  Please set 
ITK_DIR.")
   ENDIF(ITK_FOUND)

ENDIF( BUILD_OUTSIDE_INSIGHT_APPLICATIONS )



If you add a line:

      SET( BUILD_OUTSIDE_INSIGHT_APPLICATIONS 1 )

Just below the PROJECT() command, then you should be able to
configure and build this application outside of the larger set
of InsightApplications.




If you need further help with your CMakeLists.txt file,
then please post it to the ITK users list.



      Regards,


         Luis



-----------------
Baoyun Li wrote:
> Hello, Luis:
>  
> Thank you so much. I did as you suggested, now I can build the application.
>  
> Can you please show me example how I should write cmakelist in this 
> case? I learned to write cmake list through ITK tutorial, but can't make 
> this case work such as individual EM of Gassian Mixture and MRF.
>  
> Can you please tell what I should do if I only want to make one program 
> such as EM of Gassian Mixture and MRF? Currently is working, but it is 
> weired since I need to use ccmake for all, and then build the one I need.
>  
> I tried to wrtie cmakelist, but not working. The compiler can not find 
> header, what should be the problem. I believe the application code can 
> be made and build indepdently.
>  
>  
> Thanks
>  
> Baoyun
> 
> ------------------------------------------------------------------------
> *From:* Luis Ibanez <luis.ibanez at kitware.com>
> *To:* Baoyun Li <baoyun_li123 at yahoo.com>
> *Cc:* insight-users at itk.org
> *Sent:* Wednesday, March 4, 2009 11:38:37 AM
> *Subject:* Re: can not build--IBSRClassification application
> 
> 
> Hi Baoyun,
> 
> You must:
> 
> 1) Configure InsightApplications from the TOP,
>   not from the IBSRClassification subdirectory
> 
> 2) Then, cd in to the IBSRClassification subdir
>   and type 'make'
> 
> 
>   Regards,
> 
> 
>     Luis
> 
> 
> ----------------
> Baoyun Li wrote:
>  > Dear Luis and All:
>  >  I am trying to buid IBSRClassification in the ITK application for 
> gaussian mixture models classification. But I got a lot of buid errors.
>  >  I have one folder called  EM_MRF, inside this folder I copy the 
> IBSRClassification folder and create build folder. I modified camkelist 
> file (See the end of the letter) to find ITK, if I did not change the 
> cmakelist file, I got more errors
>  >  Then in the build folder, I typed:
>  >  ccmake ../IBSRClassification.
>  >  and give the ITK directore, tyep C and G, and quitc cmake. Then 
> typed make to build the code,  I got a lot of errors. It seems that it 
> can not find most of the header.  I only copy some of them to here.
>  >  Can sombody help me to figure this problem?
>  >  Baoyun
>  >  ***********************error messages
>  >  In file included from 
> /home/gtao/code/vector_segmentation/EM_MRF/IBSRClassification/Code/ClassifierValidationInputParser.h:228,
>  >                  from 
> /home/gtao/code/vector_segmentation/EM_MRF/IBSRClassification/Code/GaussianClassifierValidationApp.h:22,
>  >                  from 
> /home/gtao/code/vector_segmentation/EM_MRF/IBSRClassification/Code/GaussianClassifierValidationApp.cxx:20:
>  > 
> /home/gtao/code/vector_segmentation/EM_MRF/IBSRClassification/Code/ClassifierValidationInputParser.txx:21:34: 
> error: RawSliceVolumeReader.h: No such file or directory
>  > 
> /home/gtao/code/vector_segmentation/EM_MRF/IBSRClassification/Code/ClassifierValidationInputParser.txx:22:29: 
> error: RawVolumeReader.h: No such file or directory
>  > In file included from 
> /home/gtao/code/vector_segmentation/EM_MRF/IBSRClassification/Code/GaussianClassifierValidationApp.h:24,
>  >                  from 
> /home/gtao/code/vector_segmentation/EM_MRF/IBSRClassification/Code/GaussianClassifierValidationApp.cxx:20:
>  > 
> /home/gtao/code/vector_segmentation/EM_MRF/IBSRClassification/Code/ClassifierValidationOutput.h:22:29: 
> error: RawVolumeWriter.h: No such file or directory
>  >  ******************Below is the cmakelist file I modified to find 
> ITK, if I did not change the cmakelist file, I got more errors
>  >  cmake_minimum_required(VERSION 2.4)
>  >    FIND_PACKAGE(ITK)
>  >  IF(ITK_FOUND)
>  >    INCLUDE(${ITK_USE_FILE})
>  >  ELSE(ITK_FOUND)
>  >    MESSAGE(FATAL_ERROR
>  >            "Cannot build InsightApplications without ITK.  Please set 
> ITK_DIR.")
>  >  ENDIF(ITK_FOUND)
>  >  INCLUDE_DIRECTORIES(
>  > ${IBSRClassification_SOURCE_DIR}/../Common
>  > ${IBSRClassification_SOURCE_DIR}
>  > )
>  > ADD_EXECUTABLE(GaussianIBSRClassificationApp 
> Code/GaussianClassifierValidationApp.cxx)
>  > INSTALL_TARGETS(/bin GaussianIBSRClassificationApp)
>  > TARGET_LINK_LIBRARIES (GaussianIBSRClassificationApp
>  > ITKBasicFilters
>  > ITKIO
>  > )
>  >
>  > ADD_EXECUTABLE(KmeansIBSRClassificationApp 
> Code/KmeansClassifierValidationApp.cxx)
>  > INSTALL_TARGETS(/bin KmeansIBSRClassificationApp)
>  > TARGET_LINK_LIBRARIES (KmeansIBSRClassificationApp
>  > ITKBasicFilters
>  > ITKIO
>  > )
>  >
>  > ADD_EXECUTABLE(MRFGaussianIBSRClassificationApp 
> Code/MRFGaussianClassifierValidationApp.cxx)
>  > INSTALL_TARGETS(/bin MRFGaussianIBSRClassificationApp)
>  > TARGET_LINK_LIBRARIES (MRFGaussianIBSRClassificationApp
>  > ITKBasicFilters
>  > ITKIO
>  > )
>  >
>  > ADD_EXECUTABLE(MRFKmeansIBSRClassificationApp 
> Code/MRFKmeansClassifierValidationApp.cxx)
>  > INSTALL_TARGETS(/bin MRFKmeansIBSRClassificationApp)
>  > TARGET_LINK_LIBRARIES (MRFKmeansIBSRClassificationApp
>  > ITKBasicFilters
>  > ITKIO
>  > )
>  >
>