[Insight-users] ITK for fluorescence microscopy - BioImageXD

[Daniel James White]

Hi Alex,


On May 11, 2009, at 4:12 PM, alex gouaillard wrote:
>
> BioImageXD is also a wonderful application that has a lot of nice  
> features. They also developed an LSM reader which is the most  
> complete LSM reader freely available in the ITK / VTK community.  
> They also went the extra mile to make this LSM reader available  
> under BSD, and we're using it right now. By the way Dan, we are  
> going to release a channel unmixing (FastICA) code in ITK soon. You  
> might be interested in integrating it.
>

cheers for the props!
spectral / channel Unmixing might be interesting yes! cheers for the  
hint!



> BioImageXD: mainly C/C++ and python. Use ITK / VTK / wxWindow /  
> wxPython. Intenral support for specific formats (zeiss, leica, ...).  
> Application, but i suppose python module could be used  
> independently? License GPL which prevents me from reading the code.
>

really...? Why? You are in academia right?

cheers

Dan


>
> alex.
>
>
>
>
> On May 11, 2009, at 3:52 AM, Daniel James White wrote:
>
>> Hi  Prashanth ,
>>
>> see
>> www.bioimagexd.net
>>
>> it works very well for us.
>>
>> If you want to start a project from scratch, then good luck!
>> If you want to help us extend the functionality of BXD in
>> collaboration with us,
>> then you would be very welcome to join the team!
>>
>> Its very easy to add ITK functions to ITK,
>> as you can see how we did ti already in the source code,
>> and its only a few lines to add for each new class (depending on how
>> complex the parameters for it etc are)
>>
>> We are also doing work here at MPI-CBG on segmentation of bright
>> field, phase, DIC etc images.
>>
>> cheers
>>
>> Dan and the BXD team
>>
>> On May 9, 2009, at 6:00 PM, insight-users-request at itk.org wrote:
>>
>>>
>>>
>>> Dear ITK Users-
>>>
>>> I am considering using ITK as the basis for a set of tools for
>>> analysis of fluorescence and bright-field images. I am curious to
>>> know if others have tried/ are trying it, and if so what their
>>> feedback is?
>>>
>>> Thanks,
>>> --Prashanth
>>
>> Dr. Daniel James White BSc. (Hons.) PhD
>> Senior Microscopist / Image Visualisation, Processing and Analysis
>> Light Microscopy and Image Processing Facilities
>> Max Planck Institute of Molecular Cell Biology and Genetics
>> Pfotenhauerstrasse 108
>> 01307 DRESDEN
>> Germany
>>
>>
>> New Mobile Number!!!
>>
>> +49 (0)15114966933 (German Mobile)
>> +49  (0)351 210 2627 (Work phone at MPI-CBG)
>> +49  (0)351 210 1078 (Fax MPI-CBG LMF)
>>
>> http://www.bioimagexd.net
>> http://www.chalkie.org.uk
>> dan at chalkie.org.uk
>> ( white at mpi-cbg.de )
>>
>>
>>
>>
>>
>>
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Dr. Daniel James White BSc. (Hons.) PhD
Senior Microscopist / Image Visualisation, Processing and Analysis
Light Microscopy and Image Processing Facilities
Max Planck Institute of Molecular Cell Biology and Genetics
Pfotenhauerstrasse 108
01307 DRESDEN
Germany

+49 (0)15114966933 (German Mobile)
+49  (0)351 210 2627 (Work phone at MPI-CBG)
+49  (0)351 210 1078 (Fax MPI-CBG LMF)

http://www.bioimagexd.net
http://www.chalkie.org.uk
dan at chalkie.org.uk
( white at mpi-cbg.de )