[Insight-users] ITK for fluorescence microscopy

[Lassi Paavolainen]

Hi Alex and Prashanth,

We also use ITK to process and analyse fluorescence microscopy images, 
mostly confocal data, on our BioImageXD software 
(http://www.bioimagexd.net).

Our latest public release version is already quite old but we are 
releasing a new version before July. Of course the latest source is 
available to everyone willing to compile themselves.

Yours,
Lassi Paavolainen

On Sun, 10 May 2009, alex gouaillard wrote:

> hi prashant,
> ITK is used on a daily basis in our lab to deal with confocal microscopy
> datasets. You can see a little bit more here:
> http://www.na-mic.org/Wiki/index.php/2009_Project_Week_Breakout_Session:_3D
> %2BT_Microscopy_Cell_Dataset_Segmentation
> 
> As far as I know, at least two other projects use ITK for related purposes:
> an INRA lab in france, represented by Gaetan Lehmann (see more
> here: http://www.insight-journal.com/user/view/328), and the FARSIGHT
> project of badri royssam (http://farsight-toolkit.org/).
> 
> best,
> 
> alex.
> 
> 
> On May 9, 2009, at 5:03 AM, Prashanth Ravindran wrote:
>
>       Dear ITK Users-
>
>       I am considering using ITK as the basis for a set of tools for
>       analysis of fluorescence and bright-field images. I am curious
>       to know if others have tried/ are trying it, and if so what
>       their feedback is?
>
>       Thanks,
>       --Prashanth
>
>       <ATT00001.txt>
> 
> 
> 
>

-- 
Lassi Paavolainen, M.Sc.
Software Engineer
BioImageXD (http://www.bioimagexd.net)
lopaavol at jyu.fi