[Insight-users] [Insight-developers] fixing a few remaining failing tests relating to pixel-centered coordinates

Thu May 21 08:37:44 EDT 2009

Simon,

My point is that we have not validated the new code as far as I can tell.

Bill

On Thu, May 21, 2009 at 7:57 AM, Simon Warfield
<simon.warfield at childrens.harvard.edu> wrote:
> Bill Lorensen wrote:
>>
>> Yes, I think that will be OK. We should add an Attention: warning to
>> the CMakeLists.txt file. Something like:
>>
>>  SET(msg "Attention: You have chosen to enable the use of
>> cell-centered coordinates.")
>>
>
> The tool kit currently uses a mixture of both, so the above is a bit
> misleading. How about instead:
> SET(msg "Attention: You have chosen to enable the consistent use of centered
> pixel coordinates.")
>
> We should explain the pros and cons of the choice e.g.:
>>
>>  SET(msg "${msg} This new functionality has not been fully validated.
>> USE AT YOUR OWN RISK.")
>>
>
> SET(msg "${msg} The old functionality creates an inconsistent physical
> coordinate system.")
>>
>>  SET(msg "${msg} With this ON, you can expect to see differences in
>> registration and interpolation results.")
>>
>
> differences -> improvements
>>
>> # display the message during the setup
>> MESSAGE("${msg}")
>>
>
> --
> Simon
>>
>> On Wed, May 20, 2009 at 11:23 PM, Wes Turner <wes.turner at kitware.com>
>> wrote:
>>
>>>
>>> Bill,
>>> I think the idea is to disable the cell-centered functionality until
>>> after
>>> the release.  I.e. the code will be in, but not enabled in the CMake
>>> options.  Is this an acceptable alternative?
>>> - Wes
>>> On Wed, May 20, 2009 at 7:20 PM, Bill Lorensen <bill.lorensen at gmail.com>
>>> wrote:
>>>
>>>>
>>>> I understand the current situation. I do believe however that we
>>>> should validate the new techniques. Regression testing is meant to
>>>> track changes in the code but they do not validate the code. Before we
>>>> release ITK with these new capabilities I think we should make sure
>>>> the code is correct. Even if this means we have to delay the release.
>>>>
>>>> Bill
>>>>
>>>> On Wed, May 20, 2009 at 1:57 PM, Michel Audette
>>>> <michel.audette at kitware.com> wrote:
>>>>
>>>>>
>>>>> Hi Bill,
>>>>>
>>>>> so far we are only modifying existing tests that were failing. The
>>>>> following
>>>>> tests include new code,
>>>>>
>>>>> Code/BasicFilters/itkExpandImageFilterTest.cxx:
>>>>> Code/BasicFilters/itkVectorExpandImageFilterTest.cxx:
>>>>> Code/Common/itkBSplineDeformableTransformTest2.cxx
>>>>>
>>>>> which assume pixel-centeredness. Moreover, many other tests have new
>>>>> regression data committed, and ctest selects the appropriate data set
>>>>> depending on the value of these flags.
>>>>>
>>>>> Best wishes,
>>>>>
>>>>> Michel
>>>>>
>>>>> On Wed, May 20, 2009 at 1:48 PM, Bill Lorensen
>>>>> <bill.lorensen at gmail.com>
>>>>> wrote:
>>>>>
>>>>>>
>>>>>> Do we have a test that validates the centered pixel and portable round
>>>>>> options? For example, a 1D example that can be manual verified.
>>>>>>
>>>>>> Bill
>>>>>>
>>>>>>
>>>>>> On Wed, May 20, 2009 at 1:12 PM, Michel Audette
>>>>>> <michel.audette at kitware.com> wrote:
>>>>>>
>>>>>>>
>>>>>>> Dear members of the Insight Community,
>>>>>>>
>>>>>>> in response to bug 6558, Luis and I have implemented some changes
>>>>>>> that
>>>>>>> produce pixel-centered coordinates, as well as a few other needed
>>>>>>> refinements, which are enabled by the flags
>>>>>>> ITK_USE_CENTERED_PIXEL_COORDINATES_CONSISTENTLY,
>>>>>>> ITK_USE_REGION_VALIDATION_IN_ITERATORS and
>>>>>>> ITK_USE_PORTABLE_ROUND
>>>>>>>
>>>>>>> With the flags turned off, the code behaves as before, with no
>>>>>>> failing
>>>>>>> tests. With the flags turned on there are still a number of failing
>>>>>>> tests,
>>>>>>> that are related to these new coordinates, and which have been
>>>>>>> whittled
>>>>>>> down
>>>>>>> from more than 25 to 14 currently.
>>>>>>>
>>>>>>> Nonetheless, we would like to get rid of as many of these as we can
>>>>>>> by
>>>>>>> next
>>>>>>> Monday, for the upcoming release of ITK, and consequently, we would
>>>>>>> respectfully ask interested members of the community to lend a hand
>>>>>>> with
>>>>>>> the
>>>>>>> remaining tests.
>>>>>>>
>>>>>>> I will be submitting an Experimental ctest on a regular basis, with
>>>>>>> the
>>>>>>> signature metropolis-pixelcentered.kitware
>>>>>>> Currently the failing tests are the following.
>>>>>>>    169 - itkSampleSelectiveMeanShiftBlurringFilterTest (Failed)
>>>>>>>    340 - itkMedialNodeCorrespondencesTest (Failed)
>>>>>>>    543 - itkImportImageTest (Failed)
>>>>>>>    572 - itkNonThreadedShrinkImageTest (Failed)
>>>>>>>    594 - itkShrinkImageTest (Failed)
>>>>>>>    615 - itkStreamingImageFilterTest2 (Failed)
>>>>>>>    630 - itkWarpImageFilterTest (Failed)
>>>>>>>    632 - itkWarpVectorImageFilterTest (Failed)
>>>>>>>    800 - itkMattesMutualInformationImageToImageMetricTest (Failed)
>>>>>>>    801 - itkMattesMutualInformationImageToImageMetricTest2 (Failed)
>>>>>>>    802 - itkMattesMutualInformationImageToImageMetricTest3 (Failed)
>>>>>>>    803 - itkMattesMutualInformationImageToImageMetricTest4 (Failed)
>>>>>>>    816 - itkMultiResolutionPDEDeformableRegistrationTest (Failed)
>>>>>>>    1470 - ResampleImageFilter9Test (Failed)
>>>>>>>
>>>>>>> I plan to work on failing tests relating to the itkShrinkImageFilter
>>>>>>> class.
>>>>>>>
>>>>>>> Thank you for your kind consideration.
>>>>>>>
>>>>>>> Best wishes,
>>>>>>>
>>>>>>> Michel
>>>>>>> --
>>>>>>> Michel Audette, Ph.D.
>>>>>>> R & D Engineer,
>>>>>>> Kitware Inc.,
>>>>>>> Chapel Hill, N.C.
>>>>>>>
>>>>>>>
>>>>>>> _______________________________________________
>>>>>>> Powered by www.kitware.com
>>>>>>>
>>>>>>> Visit other Kitware open-source projects at
>>>>>>> http://www.kitware.com/opensource/opensource.html
>>>>>>>
>>>>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>>>>
>>>>>>> Follow this link to subscribe/unsubscribe:
>>>>>>> http://www.itk.org/mailman/listinfo/insight-developers
>>>>>>>
>>>>>>>
>>>>>>>
>>>>>
>>>>> --
>>>>> Michel Audette, Ph.D.
>>>>> R & D Engineer,
>>>>> Kitware Inc.,
>>>>> Chapel Hill, N.C.
>>>>>
>>>>>
>>>>>
>>>>
>>>> _______________________________________________
>>>> Powered by www.kitware.com
>>>>
>>>> Visit other Kitware open-source projects at
>>>> http://www.kitware.com/opensource/opensource.html
>>>>
>>>> Please keep messages on-topic and check the ITK FAQ at:
>>>> http://www.itk.org/Wiki/ITK_FAQ
>>>>
>>>> Follow this link to subscribe/unsubscribe:
>>>> http://www.itk.org/mailman/listinfo/insight-developers
>>>>
>>>
>>> --
>>> Wesley D. Turner, Ph.D.
>>> Kitware, Inc.
>>> R&D Engineer
>>> 28 Corporate Drive
>>> Clifton Park, NY 12065-8662
>>> Phone: 518-371-3971 x120
>>>
>>>
>>
>>
>>
>
>
>
>
>