[Insight-users] statistical volume measurement of segmented ventricles

[Andriy Fedorov]

> I had previously been using the ITK that came with the 3DSlicer download, 3D
> Slicer Version 3.4 RC1 1.0 (3D Slicer Version 3.4 RC11.0), which did not
> have these classes in its Slicer3-lib/Insight/Code/Review directory.
>
> Now, I have the impetus to use the latest 3.16.0 version of ITK.
>

Hi John,

3D Slicer 3.4 is using ITK 3.14, that's why you didn't see the
classes. If you check out the current trunk source code for Slicer (or
get a recent nightly build) it is using the latest ITK 3.16. The
instructions on building Slicer from source are available here

http://www.slicer.org/slicerWiki/index.php/Slicer3:Build_Instructions#Building_the_latest_development_version

Just FYI in case you would like to develop your tools within 3D Slicer.

Andriy Fedorov

> Thanks to both of you again,
> john
>
> On Fri, Nov 13, 2009 at 11:20 AM, Bill Lorensen <bill.lorensen at gmail.com>wrote:
>
>> John,
>>
>> The classes in Gaetan's paper now reside in the Insight/Code/Review.
>>
>> Bill
>>
>> On Fri, Nov 13, 2009 at 4:29 AM, John Drozd <john.drozd at gmail.com> wrote:
>> > Thank you very much.  This is very helpful.
>> >
>> > john
>> >
>> > On Thu, Nov 12, 2009 at 3:42 PM, C.Cagatay Bilgin <bilgic at cs.rpi.edu>
>> wrote:
>> >>
>> >> I use the following submission by Gaetan for
>> >> that purpose. Note that It has way more
>> >> morphological features than you asked for.
>> >>
>> >> http://www.insight-journal.org/browse/publication/176
>> >>
>> >> Regards,
>> >>
>> >>
>> ----------------------------------------------------------------------------
>> >> Cemal Cagatay Bilgin,
>> >> Ph.D Candidate in Computer Science Department at RPI
>> >> bilgic at cs.rpi.edu - http://www.cs.rpi.edu/~bilgic<http://www.cs.rpi.edu/%7Ebilgic>
>> >> Lally 01A, 110 8th Street Troy, NY 12180-3590, USA.
>> >> Tel: (518) 276-8489, Fax:(518) 276-4033
>> >>
>> >> On Nov 12, 2009, at 12:31 PM, John Drozd wrote:
>> >>
>> >>> Hello,
>> >>>
>> >>> Using Examples/Segmentation/ConnectedThresholdImageFilter.cxx,
>> >>> I successfully segmented ventricles from an mri image of a human brain.
>> >>>
>> >>> Using ITK, I would like to calculate the statistical volume in mm^3 of
>> >>> these segmented ventricles.
>> >>> Are there any ITK functions that will allow me to calculate the volume
>> of
>> >>> a segmented region?
>> >>>
>> >>> Thanks,
>> >>> John
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